AT1G09790

COBRA-like protein 6

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
3168434 .. 3171018
2585 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G09790.2

Sequence Viewer

Length: 1365 bp
ATGGGTGCAATGCTAAATCTTTTGCTCGTCGTTACTGTCATTCTCTGTTCAATCTTATCACCCACACGGTTTATGATTATGATTGATAAAATGGTTGCAGATGGATACGATCCTCTTGATCCGTTCGGAAAAATCATTATCAAATGGGATCTTCTTTTATCATCACCTGGCCAACACCACGTACAAGTAACGTTAGAGAACATGCAAGAGTATCGACACGTGGAAAAGCCAGGGTGGAAGCTTAGCTGGCATTGGCTCAACCAAGAAGTGATATGGGACATGAAAGGAGCTGAGACGACGGAGCAAGGTAATTGCTCTGCCTTTGCCTCCAGCGGTAACCTTCCTCACTGCTGTCTCGAGCGACCAACCATAGTCGACCTTCTTCCCGGTGCTTCTCTCAACGTTCAAGTTGCCAATTGTTGCCGTGGAGGCGTCTTGACTTCCATGTCTCAGGACCACGCCAATCACGTCTCTGCTTTTCACATGACAGTTGGAAGCTCTCCTGATGGCCCTGAGGAGTTCAATATGCCTTCTAATTTCGATATAGGGGTCCCGGGTTATAGCTGCGACAATGCTACATCCGTGTCCCCGACTAAGTTTAGTACTGATAAGGGCCGTCGCAAAACACAAGCTCTAGCAACATGGGAGGCAGTGTGTGTATACTCGCAGTTTCGGTCATCACCATCGCCAAAATGCTGCGTTTCACTCTCTGCCTTCTACTACCAAAACATTGTTCCTTGTCCTACCTGTAGCTGCGGCTGCTCGAGTTCCCATTGTGTCAAGGATGGAGAGTTGCCGCCATATCTTGAACAGAAACATGATCCAGATGAGGAAGTATCGCCTGTCGTGAAGTGTTCGGATCATATGTGTCCCATCCGCATCCACTGGCATGTGAAAGTGAACTATAGAGAGTATTGGAGGGTTAAGATCACAGCAACAAATTTCAACACAATGAAGAATTACACTAATTGGAACTTAGTGGTGCTTCATCCAAACTTGAAAAGCGTCCAACAAGTCTTTAGCTTTAACTACAAATCTTTGACACCATATCAAAACAGCATCAATGACACAGGGATGTTTTGGGGAGTCCAGTTTTATAATGATGTTTTGCTTCAAGAAGGAAAGATTGGGAATGTTCAAACAGAGTTATTGCTGAAGAAGGATATGGGAAATTTCACTTTCAGAGAAGGTTGGGCTTTCCCAAGGAGAATCTTGTTCAATGGTGATGAATGTGTTATGCCTTCTCCAGATGACTTTCCAAGGCTGCCAAAATCTGCTCATTCCTCTTCGTCTTCCTCTGCTGTTATTAGCTCTGTTTCAGTCGTTTTCTGTTTTCTCCTTCATCATCTTCTTCTACTAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

454

Amino Acids

50.95

Weight (kDa)

6.37

Isoelectric Point (pI)

40.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COBRA PF04833 50 - 211 1.6e-61 COBRA-like protein
COB_C PF25079 220 - 408 6.7e-49 COBRA family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011644)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1098
AasI GACNNNNNNGTC 1 cut(s) 445
AccI GTMKAC 2 cut(s) 375, 660
AciI CCGC 4 cut(s) 333, 756, 797, 877
AclI AACGTT 2 cut(s) 191, 402
AclWI GGATC 5 cut(s) 104, 113, 156, 815, 867
AcoI YGGCCR 1 cut(s) 169
AcsI RAATTY 2 cut(s) 940, 1171
AcuI CTGAAG 1 cut(s) 1175
AcvI CACGTG 1 cut(s) 220
AcyI GRCGYC 1 cut(s) 432
AfaI GTAC 2 cut(s) 183, 604
AflIII ACRYGT 1 cut(s) 217
AgsI TTSAA 9 cut(s) 51, 407, 523, 809, 946, 1000, 1115, 1139, 1219
AhlI ACTAGT 1 cut(s) 1357
AjiI CACGTC 1 cut(s) 469
AjnI CCWGG 2 cut(s) 166, 229
AjuI GAANNNNNNNTTGG 4 cut(s) 717, 749, 1110, 1142
AluBI AGCT 9 cut(s) 241, 246, 290, 498, 564, 632, 753, 1023, 1311
AluI AGCT 9 cut(s) 241, 246, 290, 498, 564, 632, 753, 1023, 1311
Alw26I GTCTC 4 cut(s) 287, 359, 453, 475
AlwI GGATC 5 cut(s) 104, 113, 156, 815, 867
Ama87I CYCGRG 3 cut(s) 356, 553, 763
AoxI GGCC 3 cut(s) 169, 508, 613
ApeKI GCWGC 5 cut(s) 564, 696, 753, 759, 1264
ApoI RAATTY 2 cut(s) 940, 1171
AspS9I GGNCC 4 cut(s) 454, 509, 550, 613
AsuC2I CCSGG 3 cut(s) 387, 554, 555
AsuHPI GGTGA 4 cut(s) 51, 156, 672, 1235
AvaI CYCGRG 3 cut(s) 356, 553, 763
AvaII GGWCC 2 cut(s) 454, 550
AxyI CCTNAGG 1 cut(s) 513
BalI TGGCCA 1 cut(s) 171
BbrPI CACGTG 1 cut(s) 220
BbsI GAAGAC 1 cut(s) 1284
BbvI GCAGC 5 cut(s) 551, 683, 740, 746, 1251
BccI CCATC 5 cut(s) 95, 500, 691, 779, 881
BceAI ACGGC 2 cut(s) 408, 600
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BciT130I CCWGG 2 cut(s) 168, 231
BciVI GTATCC 1 cut(s) 98
BcnI CCSGG 3 cut(s) 387, 554, 555
BcoDI GTCTC 4 cut(s) 287, 359, 453, 475
BcuI ACTAGT 1 cut(s) 1357
BfaI CTAG 2 cut(s) 635, 1358
BfmI CTRYAG 2 cut(s) 748, 904
BfuI GTATCC 1 cut(s) 98
BglI GCCNNNNNGGC 1 cut(s) 429
BisI GCNGC 7 cut(s) 565, 697, 754, 757, 760, 797, 1265
BlpI GCTNAGC 1 cut(s) 242
BlsI GCNGC 7 cut(s) 566, 698, 755, 758, 761, 798, 1266
BmcAI AGTACT 1 cut(s) 604
Bme1390I CCNGG 5 cut(s) 168, 231, 387, 554, 555
Bme18I GGWCC 2 cut(s) 454, 550
BmeT110I CYCGRG 3 cut(s) 356, 553, 763
BmgBI CACGTC 1 cut(s) 469
BmgT120I GGNCC 4 cut(s) 454, 509, 550, 613
BmiI GGNNCC 2 cut(s) 551, 552
BmrFI CCNGG 5 cut(s) 168, 231, 387, 554, 555
BmsI GCATC 2 cut(s) 888, 1068
BpiI GAAGAC 1 cut(s) 1284
BpmI CTGGAG 2 cut(s) 313, 1230
Bpu1102I GCTNAGC 1 cut(s) 242
BpuMI CCSGG 3 cut(s) 387, 554, 555
BsaAI YACGTR 2 cut(s) 181, 220
BsaHI GRCGYC 1 cut(s) 432
BsaJI CCNNGG 5 cut(s) 230, 424, 553, 1202, 1259
BsaXI ACNNNNNCTCC 2 cut(s) 638, 668
Bse1I ACTGG 2 cut(s) 890, 1090
Bse21I CCTNAGG 1 cut(s) 513
Bse3DI GCAATG 1 cut(s) 15
BseBI CCWGG 2 cut(s) 168, 231
BseDI CCNNGG 5 cut(s) 230, 424, 553, 1202, 1259
BseGI GGATG 6 cut(s) 578, 790, 873, 879, 988, 1080
BseMI GCAATG 1 cut(s) 15
BseMII CTCAG 3 cut(s) 282, 464, 504
BseNI ACTGG 2 cut(s) 890, 1090
BseRI GAGGAG 1 cut(s) 530
BseXI GCAGC 5 cut(s) 551, 683, 740, 746, 1251
BshFI GGCC 3 cut(s) 171, 510, 615
BsiHKCI CYCGRG 3 cut(s) 356, 553, 763
BsiSI CCGG 2 cut(s) 387, 554
BslFI GGGAC 4 cut(s) 290, 536, 571, 855
BsmAI GTCTC 4 cut(s) 287, 359, 453, 475
BsmBI CGTCTC 2 cut(s) 287, 475
BsmFI GGGAC 4 cut(s) 290, 536, 571, 855
BsnI GGCC 3 cut(s) 171, 510, 615
BsoBI CYCGRG 3 cut(s) 356, 553, 763
Bsp143I GATC 6 cut(s) 109, 118, 148, 820, 859, 927
Bsp1720I GCTNAGC 1 cut(s) 242
BspACI CCGC 4 cut(s) 333, 756, 797, 877
BspANI GGCC 3 cut(s) 171, 510, 615
BspCNI CTCAG 3 cut(s) 283, 463, 505
BspLI GGNNCC 2 cut(s) 551, 552
BspPI GGATC 5 cut(s) 104, 113, 156, 815, 867
BsrDI GCAATG 1 cut(s) 15
BsrI ACTGG 2 cut(s) 890, 1090
BssECI CCNNGG 5 cut(s) 230, 424, 553, 1202, 1259
BssMI GATC 6 cut(s) 109, 118, 148, 820, 859, 927
BssNAI GTATAC 1 cut(s) 661
BssNI GRCGYC 1 cut(s) 432
BssT1I CCWWGG 2 cut(s) 1202, 1259
Bst1107I GTATAC 1 cut(s) 661
Bst2UI CCWGG 2 cut(s) 168, 231
Bst4CI ACNGT 3 cut(s) 37, 69, 490
Bst6I CTCTTC 1 cut(s) 1291
BstACI GRCGYC 1 cut(s) 432
BstBAI YACGTR 2 cut(s) 181, 220
BstC8I GCNNGC 1 cut(s) 248
BstDEI CTNAG 6 cut(s) 242, 291, 450, 513, 594, 976
BstDSI CCRYGG 1 cut(s) 424
BstEII GGTNACC 1 cut(s) 335
BstF5I GGATG 6 cut(s) 578, 790, 873, 879, 988, 1080
BstKTI GATC 6 cut(s) 112, 121, 151, 823, 862, 930
BstMAI GTCTC 4 cut(s) 287, 359, 453, 475
BstMBI GATC 6 cut(s) 109, 118, 148, 820, 859, 927
BstMWI GCNNNNNNNGC 3 cut(s) 247, 429, 759
BstNI CCWGG 2 cut(s) 168, 231
BstNSI RCATGY 2 cut(s) 205, 893
BstPI GGTNACC 1 cut(s) 335
BstSCI CCNGG 5 cut(s) 166, 229, 385, 552, 553
BstSFI CTRYAG 2 cut(s) 748, 904
BstV1I GCAGC 5 cut(s) 551, 683, 740, 746, 1251
BstV2I GAAGAC 1 cut(s) 1284
BstX2I RGATCY 1 cut(s) 148
BstYI RGATCY 1 cut(s) 148
BstZ17I GTATAC 1 cut(s) 661
Bsu36I CCTNAGG 1 cut(s) 513
BsuI GTATCC 1 cut(s) 98
BsuRI GGCC 3 cut(s) 171, 510, 615
BtgI CCRYGG 1 cut(s) 424
BtgZI GCGATG 1 cut(s) 669
BtrI CACGTC 1 cut(s) 469
BtsCI GGATG 6 cut(s) 578, 790, 873, 879, 988, 1080
BtsI GCAGTG 2 cut(s) 346, 657
BtsIMutI CAGTG 3 cut(s) 346, 657, 883
Cac8I GCNNGC 1 cut(s) 248
Cfr13I GGNCC 4 cut(s) 454, 509, 550, 613
Cfr9I CCCGGG 1 cut(s) 553
CseI GACGC 2 cut(s) 421, 994
Csp6I GTAC 2 cut(s) 182, 603
CviAII CATG 7 cut(s) 202, 280, 445, 484, 642, 818, 890
CviQI GTAC 2 cut(s) 182, 603
DdeI CTNAG 6 cut(s) 242, 291, 450, 513, 594, 976
DpnI GATC 6 cut(s) 111, 120, 150, 822, 861, 929
DpnII GATC 6 cut(s) 109, 118, 148, 820, 859, 927
DrdI GACNNNNNNGTC 1 cut(s) 445
DseDI GACNNNNNNGTC 1 cut(s) 445
EaeI YGGCCR 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 1291
EarI CTCTTC 1 cut(s) 1291
Eco130I CCWWGG 2 cut(s) 1202, 1259
Eco47I GGWCC 2 cut(s) 454, 550
Eco57I CTGAAG 1 cut(s) 1175
Eco72I CACGTG 1 cut(s) 220
Eco81I CCTNAGG 1 cut(s) 513
Eco88I CYCGRG 3 cut(s) 356, 553, 763
Eco91I GGTNACC 1 cut(s) 335
EcoO109I RGGNCCY 1 cut(s) 550
EcoO65I GGTNACC 1 cut(s) 335
EcoRII CCWGG 2 cut(s) 166, 229
EcoT14I CCWWGG 2 cut(s) 1202, 1259
ErhI CCWWGG 2 cut(s) 1202, 1259
Esp3I CGTCTC 2 cut(s) 287, 475
FaeI CATG 7 cut(s) 205, 283, 448, 487, 645, 821, 893
FaqI GGGAC 4 cut(s) 290, 536, 571, 855
FatI CATG 7 cut(s) 201, 279, 444, 483, 641, 817, 889
FauNDI CATATG 1 cut(s) 864
FblI GTMKAC 2 cut(s) 375, 660
Fnu4HI GCNGC 7 cut(s) 565, 697, 754, 757, 760, 797, 1265
FokI GGATG 6 cut(s) 565, 797, 860, 866, 975, 1087
Fsp4HI GCNGC 7 cut(s) 565, 697, 754, 757, 760, 797, 1265
FspBI CTAG 2 cut(s) 635, 1358
GluI GCNGC 7 cut(s) 565, 697, 754, 757, 760, 797, 1265
GsuI CTGGAG 2 cut(s) 313, 1230
HaeIII GGCC 3 cut(s) 171, 510, 615
HapII CCGG 2 cut(s) 387, 554
HgaI GACGC 2 cut(s) 421, 994
Hin1I GRCGYC 1 cut(s) 432
Hin1II CATG 7 cut(s) 205, 283, 448, 487, 645, 821, 893
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HindIII AAGCTT 1 cut(s) 239
HinfI GANTC 2 cut(s) 1086, 1209
HpaII CCGG 2 cut(s) 387, 554
HphI GGTGA 4 cut(s) 51, 156, 672, 1235
Hpy166II GTNNAC 3 cut(s) 376, 661, 901
Hpy188I TCNGA 3 cut(s) 128, 859, 1184
Hpy8I GTNNAC 3 cut(s) 376, 661, 901
Hpy99I CGWCG 3 cut(s) 32, 301, 621
HpyAV CCTTC 9 cut(s) 350, 389, 540, 724, 1112, 1153, 1181, 1251, 1349
HpyCH4III ACNGT 3 cut(s) 37, 69, 490
HpyCH4IV ACGT 5 cut(s) 180, 191, 219, 402, 468
HpyCH4V TGCA 3 cut(s) 8, 98, 205
HpyF10VI GCNNNNNNNGC 3 cut(s) 247, 429, 759
HpyF3I CTNAG 6 cut(s) 242, 291, 450, 513, 594, 976
HpySE526I ACGT 5 cut(s) 180, 191, 219, 402, 468
Hsp92I GRCGYC 1 cut(s) 432
Hsp92II CATG 7 cut(s) 205, 283, 448, 487, 645, 821, 893
KflI GGGWCCC 1 cut(s) 550
Kzo9I GATC 6 cut(s) 109, 118, 148, 820, 859, 927
LmnI GCTCC 2 cut(s) 287, 301
Lsp1109I GCAGC 5 cut(s) 551, 683, 740, 746, 1251
LweI GCATC 2 cut(s) 888, 1068
MaeI CTAG 2 cut(s) 635, 1358
MaeII ACGT 5 cut(s) 180, 191, 219, 402, 468
MaeIII GTNAC 3 cut(s) 31, 187, 335
MalI GATC 6 cut(s) 111, 120, 150, 822, 861, 929
MboI GATC 6 cut(s) 109, 118, 148, 820, 859, 927
MboII GAAGA 8 cut(s) 143, 374, 967, 1168, 1278, 1284, 1340, 1343
MfeI CAATTG 1 cut(s) 415
MflI RGATCY 1 cut(s) 148
MlsI TGGCCA 1 cut(s) 171
MluCI AATT 7 cut(s) 310, 415, 535, 940, 958, 967, 1171
MluNI TGGCCA 1 cut(s) 171
MlyI GAGTC 1 cut(s) 1095
MmeI TCCRAC 2 cut(s) 472, 1033
Mox20I TGGCCA 1 cut(s) 171
MscI TGGCCA 1 cut(s) 171
MseI TTAA 2 cut(s) 924, 1026
MslI CAYNNNNRTG 2 cut(s) 888, 1073
Msp20I TGGCCA 1 cut(s) 171
MspA1I CMGCKG 1 cut(s) 333
MspI CCGG 2 cut(s) 387, 554
MspR9I CCNGG 5 cut(s) 168, 231, 387, 554, 555
MunI CAATTG 1 cut(s) 415
MvaI CCWGG 2 cut(s) 168, 231
MwoI GCNNNNNNNGC 3 cut(s) 247, 429, 759
NciI CCSGG 3 cut(s) 387, 554, 555
NdeI CATATG 1 cut(s) 864
NdeII GATC 6 cut(s) 109, 118, 148, 820, 859, 927
NlaIII CATG 7 cut(s) 205, 283, 448, 487, 645, 821, 893
NlaIV GGNNCC 2 cut(s) 551, 552
NspI RCATGY 2 cut(s) 205, 893
PaeR7I CTCGAG 2 cut(s) 356, 763
PcsI WCGNNNNNNNCGW 1 cut(s) 465
PfeI GAWTC 1 cut(s) 1209
PkrI GCNGC 7 cut(s) 566, 698, 755, 758, 761, 798, 1266
PleI GAGTC 1 cut(s) 1094
PmaCI CACGTG 1 cut(s) 220
PmlI CACGTG 1 cut(s) 220
PpsI GAGTC 1 cut(s) 1094
Ppu21I YACGTR 2 cut(s) 181, 220
PpuMI RGGWCCY 1 cut(s) 550
PsiI TTATAA 1 cut(s) 1098
Psp1406I AACGTT 2 cut(s) 191, 402
Psp5II RGGWCCY 1 cut(s) 550
Psp6I CCWGG 2 cut(s) 166, 229
PspCI CACGTG 1 cut(s) 220
PspEI GGTNACC 1 cut(s) 335
PspGI CCWGG 2 cut(s) 166, 229
PspN4I GGNNCC 2 cut(s) 551, 552
PspPI GGNCC 4 cut(s) 454, 509, 550, 613
PspPPI RGGWCCY 1 cut(s) 550
PspXI VCTCGAGB 1 cut(s) 763
PsuI RGATCY 1 cut(s) 148
RsaI GTAC 2 cut(s) 183, 604
RsaNI GTAC 2 cut(s) 182, 603
RseI CAYNNNNRTG 2 cut(s) 888, 1073
SalI GTCGAC 1 cut(s) 374
SaqAI TTAA 2 cut(s) 924, 1026
SatI GCNGC 7 cut(s) 565, 697, 754, 757, 760, 797, 1265
Sau3AI GATC 6 cut(s) 109, 118, 148, 820, 859, 927
Sau96I GGNCC 4 cut(s) 454, 509, 550, 613
ScaI AGTACT 1 cut(s) 604
SchI GAGTC 1 cut(s) 1095
ScrFI CCNGG 5 cut(s) 168, 231, 387, 554, 555
SfaNI GCATC 2 cut(s) 888, 1068
SfcI CTRYAG 2 cut(s) 748, 904
Sfr274I CTCGAG 2 cut(s) 356, 763
SinI GGWCC 2 cut(s) 454, 550
SlaI CTCGAG 2 cut(s) 356, 763
SmaI CCCGGG 1 cut(s) 555
SmiMI CAYNNNNRTG 2 cut(s) 888, 1073
SmlI CTYRAG 2 cut(s) 356, 763
SmoI CTYRAG 2 cut(s) 356, 763
SpeI ACTAGT 1 cut(s) 1357
Sse9I AATT 7 cut(s) 310, 415, 535, 940, 958, 967, 1171
SsiI CCGC 4 cut(s) 333, 756, 797, 877
SspMI CTAG 2 cut(s) 635, 1358
StyD4I CCNGG 5 cut(s) 166, 229, 385, 552, 553
StyI CCWWGG 2 cut(s) 1202, 1259
TaaI ACNGT 3 cut(s) 37, 69, 490
TaiI ACGT 5 cut(s) 183, 194, 222, 405, 471
TaqI TCGA 5 cut(s) 214, 357, 375, 540, 764
TaqII GACCGA 1 cut(s) 663
TasI AATT 7 cut(s) 310, 415, 535, 940, 958, 967, 1171
TatI WGTACW 1 cut(s) 602
TauI GCSGC 2 cut(s) 759, 799
TfiI GAWTC 1 cut(s) 1209
Tru1I TTAA 2 cut(s) 924, 1026
Tru9I TTAA 2 cut(s) 924, 1026
TscAI CASTG 3 cut(s) 353, 657, 890
TseI GCWGC 5 cut(s) 564, 696, 753, 759, 1264
TspDTI ATGAA 5 cut(s) 296, 968, 977, 1242, 1331
TspGWI ACGGA 3 cut(s) 111, 314, 571
TspMI CCCGGG 1 cut(s) 553
TspRI CASTG 3 cut(s) 353, 657, 890
VpaK11BI GGWCC 2 cut(s) 454, 550
XapI RAATTY 2 cut(s) 940, 1171
XceI RCATGY 2 cut(s) 205, 893
XhoI CTCGAG 2 cut(s) 356, 763
XmaI CCCGGG 1 cut(s) 553
XmiI GTMKAC 2 cut(s) 375, 660
XspI CTAG 2 cut(s) 635, 1358
ZrmI AGTACT 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.