RchiOBHm_Chr7g0220881

COBRA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0011644
Physical Location & Seq
Forward (+)
41805650 .. 41808217
2568 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19768

Sequence Viewer

Length: 1398 bp
ATGGGTGGTGGAGGTGCCGTCACCTTGTCTCTGACGATGATCATCTTCTTGTCTTCCATTTCCGTTGTTTGTGGTGGTGGTGGTGCAGATGGATACGACCCATCAGATCCTTATGGTAACGTAACCATCACTTGGGATTTCCTCTCCCAGAGCGGCCCAGATACGTATGGCATAAAAGTATCAATATACAACCTGCAACAATACAGGCATGTCGAGGTGCCAGGATGGAAACTAGAATGGACGTGGAACAAGTCGGAAGTGATTTGGGACATGCGTGGTGCCGAGGCAGTTGAGCAAGGAGATTGCTCAGCGTTTATGGCTTCCGGTGCCGGACAGCTTCCTCATTGCTGCATGAAGCGGCCCGTCATCATTGACCTGCTTCCCGGAACTCCTTACAACATGCAGTACACCAACTGCTGCAAGGGAGGTGTTTTGTCATCCATGAACCAAGACCCTTCCAAGTATCTCTCCGCCTTTCAGATGAGCATTGGAAACTTTCTTGTTACCCGCCAAGGATCAGACAATCCCTTTGATAAGCTTAACATTACAATGCCTACCAATTTCAATCTTGGAATTCCTGGTTACACCTGTGGAGACGCGTTTCTAGTCCCCCCAACGAGGTTTTCTGATGATAAAGGACGCCGCTGGAAACAAACCCTTGAGACATGGAACATCACCTGCACCTACTCTCAGTTCCAGGCTTCTCGCGCACCAAAGTGCTGCGTGTCCTTGTCTGCCTTCTACAACACCACCATTGTCAATTGCCCTCGTTGCAGTTGTGGATGCCAAGGACTAGGAGGAGCCAAATGTATCAAGTCTGGTGACGAGCCTCCTTCTACTGTGCTAAAACTTCCACAGGATCCACAAGCAGCAGCATTACCTCCTCTGGTAACATGTTCGGAGCACATGTGCCCCATCAGAGTTCACTGGCATGTCAAGCAGAGTTATAAGGAGTATTGGAGAGTCAAGATCACAATCACCAATCTCAATTTTCTCAAAAACTATTCTGACTGGAACTTAGTCGTTCAGCACCCAAACTTAAAAAGCGTCAGGCAGCTTTTCAGCTTCAATTATCGGCCCCTGACCTATGGAAACATCAATGATACGGGCATGTTTTGGGGCATTAAATTCTATAACGATATGCTATTAACCTCGGGAAACCAAGGGAACGCACAAACAGAAATGTTGCTGCACAAGGATGAAGGAATTTTCACATTCAGAGAAGGATGGACTTTCCCAAGAAGAATTTCCTTCAATGGGGATGAATGTGTAATGCCCCCTCCAGATGACTACCCCACACTTCCCAGTGGAGCTTATACTATTGGAGCAAACCTCAACCCTTCCCTACTATTAGTCTCCTTCTTGTTCCTAGCAGTAGCAGCACCGGCTCTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COBRA

Protein Analysis

465

Amino Acids

51.6

Weight (kDa)

6.98

Isoelectric Point (pI)

35.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COBRA PF04833 56 - 230 5.1e-57 COBRA-like protein
COB_C PF25079 239 - 432 9.2e-50 COBRA family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011644)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09790 AT1G09790
fragaria_vesca FvH4_1g08930 FvH4_5g28720
malus_domestica MD08G1239300.v1.1 MD15G1430900.v1.1
prunus_persica Prupe.1G575900_v2.0.a1 Prupe.1G575900_v2.0.a1
pyrus_communis pycom08g20760
rosa_chinensis RchiOBHm_Chr7g0220881
rosa_laevigata RLG00000002195 RLG00000015287
rosa_multiflora Rmu_ssc0000286.1_g000004
rosa_roxburghii Rroxscaffold_3G00238910
rosa_rugosa Rorug07G0198100
rosa_samantha Rh7AG338300 Rh7BG329100 Rh7CG356400 Rh7DG337200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 948
AarI CACCTGC 1 cut(s) 686
Acc36I ACCTGC 3 cut(s) 201, 384, 686
AccB1I GGYRCC 4 cut(s) 14, 217, 278, 326
AccB7I CCANNNNNTGG 1 cut(s) 132
AccBSI CCGCTC 1 cut(s) 153
AccII CGCG 2 cut(s) 599, 708
AciI CCGC 5 cut(s) 153, 358, 471, 508, 643
AclWI GGATC 4 cut(s) 101, 523, 854, 867
AcsI RAATTY 4 cut(s) 573, 1127, 1206, 1245
AcyI GRCGYC 1 cut(s) 640
AfaI GTAC 1 cut(s) 407
AfiI CCNNNNNNNGG 3 cut(s) 132, 618, 1257
AflIII ACRYGT 3 cut(s) 597, 893, 906
AgsI TTSAA 3 cut(s) 565, 1069, 1255
AjiI CACGTC 1 cut(s) 243
AjnI CCWGG 3 cut(s) 220, 577, 696
AjuI GAANNNNNNNTTGG 4 cut(s) 607, 639, 1231, 1263
AleI CACNNNNGTG 1 cut(s) 715
AluBI AGCT 5 cut(s) 337, 538, 1057, 1065, 1313
AluI AGCT 5 cut(s) 337, 538, 1057, 1065, 1313
Alw21I GWGCWC 1 cut(s) 906
Alw26I GTCTC 4 cut(s) 33, 588, 656, 1360
AlwI GGATC 4 cut(s) 101, 523, 854, 867
Ama87I CYCGRG 1 cut(s) 1153
AoxI GGCC 3 cut(s) 154, 359, 1076
ApeKI GCWGC 8 cut(s) 348, 417, 720, 869, 872, 1054, 1189, 1379
ApoI RAATTY 4 cut(s) 573, 1127, 1206, 1245
ArsI GACNNNNNNTTYG 2 cut(s) 512, 544
Asp700I GAANNNNTTC 1 cut(s) 1246
AspLEI GCGC 1 cut(s) 710
AspS9I GGNCC 3 cut(s) 155, 360, 1077
AsuC2I CCSGG 1 cut(s) 384
AsuHPI GGTGA 4 cut(s) 13, 667, 833, 970
AvaI CYCGRG 1 cut(s) 1153
BaeGI GKGCMC 1 cut(s) 914
BamHI GGATCC 1 cut(s) 859
BanI GGYRCC 4 cut(s) 14, 217, 278, 326
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 906
BbvI GCAGC 8 cut(s) 335, 404, 707, 881, 884, 1066, 1176, 1391
BccI CCATC 6 cut(s) 83, 109, 134, 219, 923, 1221
BceAI ACGGC 1 cut(s) 2
BciT130I CCWGG 3 cut(s) 222, 579, 698
BciVI GTATCC 1 cut(s) 86
BclI TGATCA 1 cut(s) 39
BcnI CCSGG 1 cut(s) 384
BcoDI GTCTC 4 cut(s) 33, 588, 656, 1360
BfaI CTAG 4 cut(s) 233, 605, 794, 1370
BfuAI ACCTGC 3 cut(s) 201, 384, 686
BfuI GTATCC 1 cut(s) 86
BlpI GCTNAGC 1 cut(s) 307
Bme1390I CCNGG 4 cut(s) 222, 384, 579, 698
BmeT110I CYCGRG 1 cut(s) 1153
BmgBI CACGTC 1 cut(s) 243
BmgT120I GGNCC 3 cut(s) 155, 360, 1077
BmiI GGNNCC 7 cut(s) 16, 219, 280, 328, 802, 861, 1079
BmrFI CCNGG 4 cut(s) 222, 384, 579, 698
BmrI ACTGGG 1 cut(s) 1299
BmsI GCATC 1 cut(s) 773
BmuI ACTGGG 1 cut(s) 1299
BpiI GAAGAC 1 cut(s) 45
BplI GAGNNNNNCTC 2 cut(s) 1317, 1349
BpmI CTGGAG 1 cut(s) 1266
Bpu1102I GCTNAGC 1 cut(s) 307
BpuEI CTTGAG 1 cut(s) 680
BpuMI CCSGG 1 cut(s) 384
BsaAI YACGTR 1 cut(s) 165
BsaBI GATNNNNATC 2 cut(s) 41, 974
BsaHI GRCGYC 1 cut(s) 640
BsaJI CCNNGG 5 cut(s) 282, 511, 787, 1152, 1162
BsaWI WCCGGW 1 cut(s) 323
BsaXI ACNNNNNCTCC 3 cut(s) 33, 893, 923
Bsc4I CCNNNNNNNGG 3 cut(s) 132, 618, 1257
Bse118I RCCGGY 1 cut(s) 1384
Bse1I ACTGG 3 cut(s) 932, 1016, 1305
Bse3DI GCAATG 1 cut(s) 343
Bse8I GATNNNNATC 2 cut(s) 41, 974
BseBI CCWGG 3 cut(s) 222, 579, 698
BseDI CCNNGG 5 cut(s) 282, 511, 787, 1152, 1162
BseGI GGATG 6 cut(s) 230, 437, 788, 1204, 1232, 1267
BseJI GATNNNNATC 2 cut(s) 41, 974
BseLI CCNNNNNNNGG 3 cut(s) 132, 618, 1257
BseMI GCAATG 1 cut(s) 343
BseMII CTCAG 2 cut(s) 321, 704
BseNI ACTGG 3 cut(s) 932, 1016, 1305
BseRI GAGGAG 2 cut(s) 813, 873
BseSI GKGCMC 1 cut(s) 914
BseXI GCAGC 8 cut(s) 335, 404, 707, 881, 884, 1066, 1176, 1391
BsgI GTGCAG 3 cut(s) 105, 664, 1175
Bsh1236I CGCG 2 cut(s) 599, 708
BshFI GGCC 3 cut(s) 156, 361, 1078
BshNI GGYRCC 4 cut(s) 14, 217, 278, 326
BsiHKAI GWGCWC 1 cut(s) 906
BsiHKCI CYCGRG 1 cut(s) 1153
BsiSI CCGG 4 cut(s) 324, 330, 384, 1385
BslFI GGGAC 2 cut(s) 281, 593
BslI CCNNNNNNNGG 3 cut(s) 132, 618, 1257
BsmAI GTCTC 4 cut(s) 33, 588, 656, 1360
BsmBI CGTCTC 1 cut(s) 588
BsmFI GGGAC 2 cut(s) 281, 593
BsnI GGCC 3 cut(s) 156, 361, 1078
BsoBI CYCGRG 1 cut(s) 1153
Bsp1286I GDGCHC 2 cut(s) 906, 914
Bsp143I GATC 5 cut(s) 39, 106, 515, 859, 969
Bsp1720I GCTNAGC 1 cut(s) 307
BspACI CCGC 5 cut(s) 153, 358, 471, 508, 643
BspANI GGCC 3 cut(s) 156, 361, 1078
BspCNI CTCAG 2 cut(s) 320, 703
BspFNI CGCG 2 cut(s) 599, 708
BspLI GGNNCC 7 cut(s) 16, 219, 280, 328, 802, 861, 1079
BspMI ACCTGC 3 cut(s) 201, 384, 686
BspPI GGATC 4 cut(s) 101, 523, 854, 867
BspT107I GGYRCC 4 cut(s) 14, 217, 278, 326
BsrBI CCGCTC 1 cut(s) 153
BsrDI GCAATG 1 cut(s) 343
BsrFI RCCGGY 1 cut(s) 1384
BsrI ACTGG 3 cut(s) 932, 1016, 1305
BssAI RCCGGY 1 cut(s) 1384
BssECI CCNNGG 5 cut(s) 282, 511, 787, 1152, 1162
BssMI GATC 5 cut(s) 39, 106, 515, 859, 969
BssNI GRCGYC 1 cut(s) 640
BssT1I CCWWGG 3 cut(s) 511, 787, 1162
Bst2UI CCWGG 3 cut(s) 222, 579, 698
Bst4CI ACNGT 1 cut(s) 841
BstACI GRCGYC 1 cut(s) 640
BstBAI YACGTR 1 cut(s) 165
BstDEI CTNAG 3 cut(s) 307, 690, 1018
BstF5I GGATG 6 cut(s) 230, 437, 788, 1204, 1232, 1267
BstFNI CGCG 2 cut(s) 599, 708
BstHHI GCGC 1 cut(s) 710
BstKTI GATC 5 cut(s) 42, 109, 518, 862, 972
BstMAI GTCTC 4 cut(s) 33, 588, 656, 1360
BstMBI GATC 5 cut(s) 39, 106, 515, 859, 969
BstMWI GCNNNNNNNGC 7 cut(s) 317, 326, 707, 771, 937, 1379, 1385
BstNI CCWGG 3 cut(s) 222, 579, 698
BstNSI RCATGY 7 cut(s) 212, 274, 403, 897, 910, 935, 1114
BstSCI CCNGG 4 cut(s) 220, 382, 577, 696
BstSLI GKGCMC 1 cut(s) 914
BstSNI TACGTA 1 cut(s) 165
BstUI CGCG 2 cut(s) 599, 708
BstV1I GCAGC 8 cut(s) 335, 404, 707, 881, 884, 1066, 1176, 1391
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 2 cut(s) 106, 859
BstYI RGATCY 2 cut(s) 106, 859
BsuI GTATCC 1 cut(s) 86
BsuRI GGCC 3 cut(s) 156, 361, 1078
BtrI CACGTC 1 cut(s) 243
BtsCI GGATG 6 cut(s) 230, 437, 788, 1204, 1232, 1267
BtsIMutI CAGTG 2 cut(s) 925, 1312
BveI ACCTGC 3 cut(s) 201, 384, 686
CfoI GCGC 1 cut(s) 710
Cfr10I RCCGGY 1 cut(s) 1384
Cfr13I GGNCC 3 cut(s) 155, 360, 1077
CseI GACGC 3 cut(s) 605, 648, 1036
Csp6I GTAC 1 cut(s) 406
CviQI GTAC 1 cut(s) 406
DdeI CTNAG 3 cut(s) 307, 690, 1018
DpnI GATC 5 cut(s) 41, 108, 517, 861, 971
DpnII GATC 5 cut(s) 39, 106, 515, 859, 969
EciI GGCGGA 1 cut(s) 460
Eco105I TACGTA 1 cut(s) 165
Eco130I CCWWGG 3 cut(s) 511, 787, 1162
Eco88I CYCGRG 1 cut(s) 1153
EcoRI GAATTC 1 cut(s) 573
EcoRII CCWGG 3 cut(s) 220, 577, 696
EcoT14I CCWWGG 3 cut(s) 511, 787, 1162
ErhI CCWWGG 3 cut(s) 511, 787, 1162
Esp3I CGTCTC 1 cut(s) 588
FaqI GGGAC 2 cut(s) 281, 593
FauI CCCGC 1 cut(s) 515
FbaI TGATCA 1 cut(s) 39
FokI GGATG 6 cut(s) 237, 424, 795, 1211, 1239, 1274
FspBI CTAG 4 cut(s) 233, 605, 794, 1370
GlaI GCGC 1 cut(s) 709
GsuI CTGGAG 1 cut(s) 1266
HaeIII GGCC 3 cut(s) 156, 361, 1078
HapII CCGG 4 cut(s) 324, 330, 384, 1385
HgaI GACGC 3 cut(s) 605, 648, 1036
HhaI GCGC 1 cut(s) 710
Hin1I GRCGYC 1 cut(s) 640
Hin6I GCGC 1 cut(s) 708
HinP1I GCGC 1 cut(s) 708
HindIII AAGCTT 1 cut(s) 536
HinfI GANTC 1 cut(s) 963
HpaII CCGG 4 cut(s) 324, 330, 384, 1385
HphI GGTGA 4 cut(s) 13, 667, 833, 970
Hpy166II GTNNAC 2 cut(s) 408, 925
Hpy188III TCNNGA 3 cut(s) 967, 1155, 1283
Hpy8I GTNNAC 2 cut(s) 408, 925
HpyAV CCTTC 8 cut(s) 465, 748, 843, 1196, 1217, 1261, 1350, 1369
HpyCH4III ACNGT 1 cut(s) 841
HpyCH4IV ACGT 3 cut(s) 120, 164, 242
HpyCH4V TGCA 8 cut(s) 86, 196, 351, 403, 420, 681, 774, 1192
HpyF10VI GCNNNNNNNGC 7 cut(s) 317, 326, 707, 771, 937, 1379, 1385
HpyF3I CTNAG 3 cut(s) 307, 690, 1018
HpySE526I ACGT 3 cut(s) 120, 164, 242
Hsp92I GRCGYC 1 cut(s) 640
HspAI GCGC 1 cut(s) 708
Ksp22I TGATCA 1 cut(s) 39
Kzo9I GATC 5 cut(s) 39, 106, 515, 859, 969
LmnI GCTCC 4 cut(s) 800, 901, 1310, 1325
Lsp1109I GCAGC 8 cut(s) 335, 404, 707, 881, 884, 1066, 1176, 1391
LweI GCATC 1 cut(s) 773
MaeI CTAG 4 cut(s) 233, 605, 794, 1370
MaeII ACGT 3 cut(s) 120, 164, 242
MaeIII GTNAC 7 cut(s) 19, 116, 121, 502, 581, 821, 889
MalI GATC 5 cut(s) 41, 108, 517, 861, 971
MbiI CCGCTC 1 cut(s) 153
MboI GATC 5 cut(s) 39, 106, 515, 859, 969
MboII GAAGA 3 cut(s) 37, 45, 1254
MfeI CAATTG 1 cut(s) 760
MflI RGATCY 2 cut(s) 106, 859
MhlI GDGCHC 2 cut(s) 906, 914
MluCI AATT 8 cut(s) 559, 573, 760, 988, 1069, 1127, 1206, 1245
MluI ACGCGT 1 cut(s) 597
MlyI GAGTC 1 cut(s) 972
MmeI TCCRAC 1 cut(s) 234
MroXI GAANNNNTTC 1 cut(s) 1246
MseI TTAA 4 cut(s) 540, 1040, 1125, 1148
MslI CAYNNNNRTG 4 cut(s) 548, 715, 930, 1197
MspA1I CMGCKG 1 cut(s) 645
MspI CCGG 4 cut(s) 324, 330, 384, 1385
MspR9I CCNGG 4 cut(s) 222, 384, 579, 698
MunI CAATTG 1 cut(s) 760
MvaI CCWGG 3 cut(s) 222, 579, 698
MvnI CGCG 2 cut(s) 599, 708
MwoI GCNNNNNNNGC 7 cut(s) 317, 326, 707, 771, 937, 1379, 1385
NciI CCSGG 1 cut(s) 384
NdeII GATC 5 cut(s) 39, 106, 515, 859, 969
NlaIV GGNNCC 7 cut(s) 16, 219, 280, 328, 802, 861, 1079
NmeAIII GCCGAG 1 cut(s) 307
NmuCI GTSAC 2 cut(s) 19, 821
NspI RCATGY 7 cut(s) 212, 274, 403, 897, 910, 935, 1114
OliI CACNNNNGTG 1 cut(s) 715
PaqCI CACCTGC 1 cut(s) 686
PciI ACATGT 2 cut(s) 893, 906
PdmI GAANNNNTTC 1 cut(s) 1246
PflMI CCANNNNNTGG 1 cut(s) 132
PfoI TCCNGGA 1 cut(s) 382
PleI GAGTC 1 cut(s) 971
PpsI GAGTC 1 cut(s) 971
Ppu21I YACGTR 1 cut(s) 165
PscI ACATGT 2 cut(s) 893, 906
PsiI TTATAA 1 cut(s) 948
Psp6I CCWGG 3 cut(s) 220, 577, 696
PspGI CCWGG 3 cut(s) 220, 577, 696
PspN4I GGNNCC 7 cut(s) 16, 219, 280, 328, 802, 861, 1079
PspPI GGNCC 3 cut(s) 155, 360, 1077
PsuI RGATCY 2 cut(s) 106, 859
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
RseI CAYNNNNRTG 4 cut(s) 548, 715, 930, 1197
SaqAI TTAA 4 cut(s) 540, 1040, 1125, 1148
Sau3AI GATC 5 cut(s) 39, 106, 515, 859, 969
Sau96I GGNCC 3 cut(s) 155, 360, 1077
SchI GAGTC 1 cut(s) 972
ScrFI CCNGG 4 cut(s) 222, 384, 579, 698
SduI GDGCHC 2 cut(s) 906, 914
SfaNI GCATC 1 cut(s) 773
SmiMI CAYNNNNRTG 4 cut(s) 548, 715, 930, 1197
SmlI CTYRAG 1 cut(s) 659
SmoI CTYRAG 1 cut(s) 659
SnaBI TACGTA 1 cut(s) 165
Sse9I AATT 8 cut(s) 559, 573, 760, 988, 1069, 1127, 1206, 1245
SsiI CCGC 5 cut(s) 153, 358, 471, 508, 643
SspMI CTAG 4 cut(s) 233, 605, 794, 1370
StyD4I CCNGG 4 cut(s) 220, 382, 577, 696
StyI CCWWGG 3 cut(s) 511, 787, 1162
TaaI ACNGT 1 cut(s) 841
TaiI ACGT 3 cut(s) 123, 167, 245
TaqI TCGA 1 cut(s) 213
TasI AATT 8 cut(s) 559, 573, 760, 988, 1069, 1127, 1206, 1245
TatI WGTACW 1 cut(s) 405
TauI GCSGC 3 cut(s) 156, 361, 645
Tru1I TTAA 4 cut(s) 540, 1040, 1125, 1148
Tru9I TTAA 4 cut(s) 540, 1040, 1125, 1148
TscAI CASTG 2 cut(s) 932, 1312
TseFI GTSAC 2 cut(s) 19, 821
TseI GCWGC 8 cut(s) 348, 417, 720, 869, 872, 1054, 1189, 1379
Tsp45I GTSAC 2 cut(s) 19, 821
TspDTI ATGAA 4 cut(s) 368, 458, 1215, 1278
TspGWI ACGGA 1 cut(s) 52
TspRI CASTG 2 cut(s) 932, 1312
Van91I CCANNNNNTGG 1 cut(s) 132
XapI RAATTY 4 cut(s) 573, 1127, 1206, 1245
XceI RCATGY 7 cut(s) 212, 274, 403, 897, 910, 935, 1114
XmnI GAANNNNTTC 1 cut(s) 1246
XspI CTAG 4 cut(s) 233, 605, 794, 1370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.