Rh7DG337200

COBRA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0011644
Physical Location & Seq
Forward (+)
44289851 .. 44292886
3036 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG337200.1

Sequence Viewer

Length: 1431 bp
ATGATCGGACAAGACTACGATCTAGGTGGAGCGAAAGAGAGACAACTCAGAATGGGTGGTGGTGCCGTCACCTTGTCTCTGATGATGATCATCTTCTTGTCTTCCATTTCCGTATGTTATGGATACGACCCATTAGATCCTTATGGCAGCGTAACCATCACTTGGGATTTTCTCTCCCAGAGCGCCCCAGATACGTATGGCATAAAAGTATCAATATACAACCTGCAACAATACAGGCATGTCGAGGTGCCAGGATGGAAACTAGAATGGACGTGGAACGAGTCGGAAGTGATTTGGGACATGCGTGGTGCCGAGGCAGTTGAGCAAGGAGATTGCTCAGCGTTTATGGCGTCCGGTGCCGGACAGCTTCCTCATTGCTGCATGAAGCGGCCCGTCATCATTGACCTGCTTCCCGGAACTCCTTACAACATGCAGTACACCAACTGCTGCAAGGGAGGTGTTTTGTCATCCATGAACCAAGACCCTTCCAAGTATCTCTCCGCCTTTCAGATGAGCATTGGAAACTTTCTTGTTACCCGCCAAGGATCAGACAATCCCTTTGATAAGCTTAACATTACAATGCCTACCAATTTCAATCTTGGAATTCCTGGTTACACCTGTGGAGACGCGTTTCTAGTCCCCCCAACGAGGTTTTCTGATGATAAAGGACGCCGCTGGAAACAAACCCTTGAGACATGGAACATCACCTGCACCTACTCTCAGTTCCAGGCTTCTCGCGCACCAAAGTGCTGCGTGTCCTTGTCTGCCTTCTACAACACCACCATTGTCAATTGCCCTCGTTGCAGTTGTGGATGCCAAGGACTAAGAGGAGCCAAATGTATCAAGTCTGGTGACGAGCCTCCTTCTACTGTGTTAAAACTTCCACAGGATCCACAAGCAGCAGCATTGCCTCCTCTGGTAACATGTTCGGAGCACATGTGCCCCATCAGAGTTCACTGGCATGTCAAGCAGAGTTATAAGGAGTATTGGAGGGTCAAGATCACAATCACCAATCTCAATTTTCTCAAAAACTATTCTGATTGGAACTTGGTCGTTCAGCACCCAAACTTAAAAAGCGTCAGGCAGCTTTTCAGCTTCAATTATCGGCCCCTCACCACCTATGGAAACATCAATGATACGGGCATGTTTTGGGGCATTAAATTCTATAACGATATGCTATTAACCTCGGGAAACCAAGGGAACGCACAAACAGAAATGTTGCTGCACAAGGATGAAGGAATTTTCACATTCAGAGAAGGATGGACTTTCCCAAGAAGAATTTCTTTTAATGGGGATGAATGTGTAATGCCCCCTCCAGATGACTACCCCACACTTCCCAGTGGAGCTTATACTATTGGAGCAAACCTCAACCCTTCCCTACTATTACTCTCCTTCTTGTTCCTAGCAGTAGCAGCACCGGCTCTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COBRA

Protein Analysis

476

Amino Acids

53.39

Weight (kDa)

6.98

Isoelectric Point (pI)

35.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COBRA PF04833 66 - 240 8.9e-57 COBRA-like protein
COB_C PF25079 249 - 443 8.1e-50 COBRA family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011644)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09790 AT1G09790
fragaria_vesca FvH4_1g08930 FvH4_5g28720
malus_domestica MD08G1239300.v1.1 MD15G1430900.v1.1
prunus_persica Prupe.1G575900_v2.0.a1 Prupe.1G575900_v2.0.a1
pyrus_communis pycom08g20760
rosa_chinensis RchiOBHm_Chr7g0220881
rosa_laevigata RLG00000002195 RLG00000015287
rosa_multiflora Rmu_ssc0000286.1_g000004
rosa_roxburghii Rroxscaffold_3G00238910
rosa_rugosa Rorug07G0198100
rosa_samantha Rh7AG338300 Rh7BG329100 Rh7CG356400 Rh7DG337200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 978
AarI CACCTGC 1 cut(s) 716
Acc36I ACCTGC 3 cut(s) 231, 414, 716
AccB1I GGYRCC 4 cut(s) 62, 247, 308, 356
AccB7I CCANNNNNTGG 1 cut(s) 162
AccII CGCG 2 cut(s) 629, 738
AciI CCGC 4 cut(s) 388, 501, 538, 673
AclWI GGATC 4 cut(s) 131, 553, 884, 897
AcsI RAATTY 4 cut(s) 603, 1160, 1239, 1278
AcyI GRCGYC 2 cut(s) 350, 670
AfaI GTAC 1 cut(s) 437
AfiI CCNNNNNNNGG 2 cut(s) 162, 648
AflIII ACRYGT 3 cut(s) 627, 923, 936
AgsI TTSAA 2 cut(s) 595, 1099
AjiI CACGTC 1 cut(s) 273
AjnI CCWGG 3 cut(s) 250, 607, 726
AjuI GAANNNNNNNTTGG 4 cut(s) 637, 669, 1264, 1296
AleI CACNNNNGTG 1 cut(s) 745
AluBI AGCT 5 cut(s) 367, 568, 1087, 1095, 1346
AluI AGCT 5 cut(s) 367, 568, 1087, 1095, 1346
Alw21I GWGCWC 1 cut(s) 936
Alw26I GTCTC 4 cut(s) 34, 81, 618, 686
AlwI GGATC 4 cut(s) 131, 553, 884, 897
Ama87I CYCGRG 1 cut(s) 1186
AoxI GGCC 2 cut(s) 389, 1106
ApeKI GCWGC 9 cut(s) 147, 378, 447, 750, 899, 902, 1084, 1222, 1412
ApoI RAATTY 4 cut(s) 603, 1160, 1239, 1278
ArsI GACNNNNNNTTYG 2 cut(s) 542, 574
Asp700I GAANNNNTTC 1 cut(s) 1279
AspLEI GCGC 2 cut(s) 185, 740
AspS9I GGNCC 2 cut(s) 390, 1107
AsuC2I CCSGG 1 cut(s) 414
AsuHPI GGTGA 5 cut(s) 61, 697, 863, 1000, 1105
AvaI CYCGRG 1 cut(s) 1186
BaeGI GKGCMC 1 cut(s) 944
BamHI GGATCC 1 cut(s) 889
BanI GGYRCC 4 cut(s) 62, 247, 308, 356
BbsI GAAGAC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 936
BbvI GCAGC 9 cut(s) 159, 365, 434, 737, 911, 914, 1096, 1209, 1424
BccI CCATC 4 cut(s) 164, 249, 953, 1254
BceAI ACGGC 1 cut(s) 50
BciT130I CCWGG 3 cut(s) 252, 609, 728
BciVI GTATCC 1 cut(s) 116
BclI TGATCA 1 cut(s) 87
BcnI CCSGG 1 cut(s) 414
BcoDI GTCTC 4 cut(s) 34, 81, 618, 686
BfaI CTAG 4 cut(s) 23, 263, 635, 1403
BfoI RGCGCY 1 cut(s) 186
BfuAI ACCTGC 3 cut(s) 231, 414, 716
BfuI GTATCC 1 cut(s) 116
BlpI GCTNAGC 1 cut(s) 337
Bme1390I CCNGG 4 cut(s) 252, 414, 609, 728
BmeT110I CYCGRG 1 cut(s) 1186
BmgBI CACGTC 1 cut(s) 273
BmgT120I GGNCC 2 cut(s) 390, 1107
BmiI GGNNCC 7 cut(s) 64, 249, 310, 358, 832, 891, 1109
BmrFI CCNGG 4 cut(s) 252, 414, 609, 728
BmrI ACTGGG 1 cut(s) 1332
BmsI GCATC 1 cut(s) 803
BmuI ACTGGG 1 cut(s) 1332
BpiI GAAGAC 1 cut(s) 93
BplI GAGNNNNNCTC 2 cut(s) 1350, 1382
BpmI CTGGAG 1 cut(s) 1299
Bpu1102I GCTNAGC 1 cut(s) 337
BpuEI CTTGAG 1 cut(s) 710
BpuMI CCSGG 1 cut(s) 414
BsaAI YACGTR 1 cut(s) 195
BsaBI GATNNNNATC 3 cut(s) 86, 89, 1004
BsaHI GRCGYC 2 cut(s) 350, 670
BsaJI CCNNGG 5 cut(s) 312, 541, 817, 1185, 1195
BsaWI WCCGGW 1 cut(s) 353
BsaXI ACNNNNNCTCC 2 cut(s) 923, 953
Bsc4I CCNNNNNNNGG 2 cut(s) 162, 648
Bse118I RCCGGY 1 cut(s) 1417
Bse1I ACTGG 2 cut(s) 962, 1338
Bse3DI GCAATG 2 cut(s) 373, 905
Bse8I GATNNNNATC 3 cut(s) 86, 89, 1004
BseBI CCWGG 3 cut(s) 252, 609, 728
BseDI CCNNGG 5 cut(s) 312, 541, 817, 1185, 1195
BseGI GGATG 6 cut(s) 260, 467, 818, 1237, 1265, 1300
BseJI GATNNNNATC 3 cut(s) 86, 89, 1004
BseLI CCNNNNNNNGG 2 cut(s) 162, 648
BseMI GCAATG 2 cut(s) 373, 905
BseMII CTCAG 3 cut(s) 61, 351, 734
BseNI ACTGG 2 cut(s) 962, 1338
BseRI GAGGAG 2 cut(s) 843, 903
BseSI GKGCMC 1 cut(s) 944
BseXI GCAGC 9 cut(s) 159, 365, 434, 737, 911, 914, 1096, 1209, 1424
BsgI GTGCAG 2 cut(s) 694, 1208
Bsh1236I CGCG 2 cut(s) 629, 738
BshFI GGCC 2 cut(s) 391, 1108
BshNI GGYRCC 4 cut(s) 62, 247, 308, 356
BsiHKAI GWGCWC 1 cut(s) 936
BsiHKCI CYCGRG 1 cut(s) 1186
BsiSI CCGG 4 cut(s) 354, 360, 414, 1418
BslFI GGGAC 2 cut(s) 311, 623
BslI CCNNNNNNNGG 2 cut(s) 162, 648
BsmAI GTCTC 4 cut(s) 34, 81, 618, 686
BsmBI CGTCTC 1 cut(s) 618
BsmFI GGGAC 2 cut(s) 311, 623
BsnI GGCC 2 cut(s) 391, 1108
BsoBI CYCGRG 1 cut(s) 1186
Bsp1286I GDGCHC 2 cut(s) 936, 944
Bsp143I GATC 7 cut(s) 3, 19, 87, 136, 545, 889, 999
Bsp1720I GCTNAGC 1 cut(s) 337
BspACI CCGC 4 cut(s) 388, 501, 538, 673
BspANI GGCC 2 cut(s) 391, 1108
BspCNI CTCAG 3 cut(s) 60, 350, 733
BspFNI CGCG 2 cut(s) 629, 738
BspLI GGNNCC 7 cut(s) 64, 249, 310, 358, 832, 891, 1109
BspMI ACCTGC 3 cut(s) 231, 414, 716
BspPI GGATC 4 cut(s) 131, 553, 884, 897
BspT107I GGYRCC 4 cut(s) 62, 247, 308, 356
BsrDI GCAATG 2 cut(s) 373, 905
BsrFI RCCGGY 1 cut(s) 1417
BsrI ACTGG 2 cut(s) 962, 1338
BssAI RCCGGY 1 cut(s) 1417
BssECI CCNNGG 5 cut(s) 312, 541, 817, 1185, 1195
BssMI GATC 7 cut(s) 3, 19, 87, 136, 545, 889, 999
BssNI GRCGYC 2 cut(s) 350, 670
BssT1I CCWWGG 3 cut(s) 541, 817, 1195
Bst2UI CCWGG 3 cut(s) 252, 609, 728
Bst4CI ACNGT 1 cut(s) 871
BstACI GRCGYC 2 cut(s) 350, 670
BstBAI YACGTR 1 cut(s) 195
BstDEI CTNAG 4 cut(s) 47, 337, 720, 824
BstF5I GGATG 6 cut(s) 260, 467, 818, 1237, 1265, 1300
BstFNI CGCG 2 cut(s) 629, 738
BstH2I RGCGCY 1 cut(s) 186
BstHHI GCGC 2 cut(s) 185, 740
BstKTI GATC 7 cut(s) 6, 22, 90, 139, 548, 892, 1002
BstMAI GTCTC 4 cut(s) 34, 81, 618, 686
BstMBI GATC 7 cut(s) 3, 19, 87, 136, 545, 889, 999
BstMWI GCNNNNNNNGC 7 cut(s) 347, 356, 737, 801, 967, 1412, 1418
BstNI CCWGG 3 cut(s) 252, 609, 728
BstNSI RCATGY 7 cut(s) 242, 304, 433, 927, 940, 965, 1147
BstSCI CCNGG 4 cut(s) 250, 412, 607, 726
BstSLI GKGCMC 1 cut(s) 944
BstSNI TACGTA 1 cut(s) 195
BstUI CGCG 2 cut(s) 629, 738
BstV1I GCAGC 9 cut(s) 159, 365, 434, 737, 911, 914, 1096, 1209, 1424
BstV2I GAAGAC 1 cut(s) 93
BstX2I RGATCY 2 cut(s) 136, 889
BstYI RGATCY 2 cut(s) 136, 889
BsuI GTATCC 1 cut(s) 116
BsuRI GGCC 2 cut(s) 391, 1108
BtrI CACGTC 1 cut(s) 273
BtsCI GGATG 6 cut(s) 260, 467, 818, 1237, 1265, 1300
BtsIMutI CAGTG 2 cut(s) 955, 1345
BveI ACCTGC 3 cut(s) 231, 414, 716
CfoI GCGC 2 cut(s) 185, 740
Cfr10I RCCGGY 1 cut(s) 1417
Cfr13I GGNCC 2 cut(s) 390, 1107
CseI GACGC 4 cut(s) 339, 635, 678, 1066
Csp6I GTAC 1 cut(s) 436
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 4 cut(s) 47, 337, 720, 824
DpnI GATC 7 cut(s) 5, 21, 89, 138, 547, 891, 1001
DpnII GATC 7 cut(s) 3, 19, 87, 136, 545, 889, 999
EciI GGCGGA 1 cut(s) 490
Eco105I TACGTA 1 cut(s) 195
Eco130I CCWWGG 3 cut(s) 541, 817, 1195
Eco88I CYCGRG 1 cut(s) 1186
EcoRI GAATTC 1 cut(s) 603
EcoRII CCWGG 3 cut(s) 250, 607, 726
EcoT14I CCWWGG 3 cut(s) 541, 817, 1195
ErhI CCWWGG 3 cut(s) 541, 817, 1195
Esp3I CGTCTC 1 cut(s) 618
FalI AAGNNNNNCTT 2 cut(s) 1267, 1299
FaqI GGGAC 2 cut(s) 311, 623
FauI CCCGC 1 cut(s) 545
FbaI TGATCA 1 cut(s) 87
FokI GGATG 6 cut(s) 267, 454, 825, 1244, 1272, 1307
FspBI CTAG 4 cut(s) 23, 263, 635, 1403
GlaI GCGC 2 cut(s) 184, 739
GsuI CTGGAG 1 cut(s) 1299
HaeII RGCGCY 1 cut(s) 186
HaeIII GGCC 2 cut(s) 391, 1108
HapII CCGG 4 cut(s) 354, 360, 414, 1418
HgaI GACGC 4 cut(s) 339, 635, 678, 1066
HhaI GCGC 2 cut(s) 185, 740
Hin1I GRCGYC 2 cut(s) 350, 670
Hin6I GCGC 2 cut(s) 183, 738
HinP1I GCGC 2 cut(s) 183, 738
HindIII AAGCTT 1 cut(s) 566
HinfI GANTC 1 cut(s) 281
HpaII CCGG 4 cut(s) 354, 360, 414, 1418
HphI GGTGA 5 cut(s) 61, 697, 863, 1000, 1105
Hpy166II GTNNAC 2 cut(s) 438, 955
Hpy188III TCNNGA 3 cut(s) 997, 1188, 1316
Hpy8I GTNNAC 2 cut(s) 438, 955
HpyAV CCTTC 7 cut(s) 495, 778, 873, 1229, 1250, 1383, 1402
HpyCH4III ACNGT 1 cut(s) 871
HpyCH4IV ACGT 2 cut(s) 194, 272
HpyCH4V TGCA 7 cut(s) 226, 381, 433, 450, 711, 804, 1225
HpyF10VI GCNNNNNNNGC 7 cut(s) 347, 356, 737, 801, 967, 1412, 1418
HpyF3I CTNAG 4 cut(s) 47, 337, 720, 824
HpySE526I ACGT 2 cut(s) 194, 272
Hsp92I GRCGYC 2 cut(s) 350, 670
HspAI GCGC 2 cut(s) 183, 738
Ksp22I TGATCA 1 cut(s) 87
Kzo9I GATC 7 cut(s) 3, 19, 87, 136, 545, 889, 999
LmnI GCTCC 5 cut(s) 29, 830, 931, 1343, 1358
Lsp1109I GCAGC 9 cut(s) 159, 365, 434, 737, 911, 914, 1096, 1209, 1424
LweI GCATC 1 cut(s) 803
MaeI CTAG 4 cut(s) 23, 263, 635, 1403
MaeII ACGT 2 cut(s) 194, 272
MaeIII GTNAC 6 cut(s) 67, 151, 532, 611, 851, 919
MalI GATC 7 cut(s) 5, 21, 89, 138, 547, 891, 1001
MboI GATC 7 cut(s) 3, 19, 87, 136, 545, 889, 999
MboII GAAGA 3 cut(s) 85, 93, 1287
MfeI CAATTG 1 cut(s) 790
MflI RGATCY 2 cut(s) 136, 889
MhlI GDGCHC 2 cut(s) 936, 944
MluCI AATT 8 cut(s) 589, 603, 790, 1018, 1099, 1160, 1239, 1278
MluI ACGCGT 1 cut(s) 627
MlyI GAGTC 1 cut(s) 290
MmeI TCCRAC 1 cut(s) 264
MroXI GAANNNNTTC 1 cut(s) 1279
MseI TTAA 6 cut(s) 570, 875, 1070, 1158, 1181, 1287
MslI CAYNNNNRTG 4 cut(s) 578, 745, 960, 1230
MspA1I CMGCKG 1 cut(s) 675
MspI CCGG 4 cut(s) 354, 360, 414, 1418
MspR9I CCNGG 4 cut(s) 252, 414, 609, 728
MunI CAATTG 1 cut(s) 790
MvaI CCWGG 3 cut(s) 252, 609, 728
MvnI CGCG 2 cut(s) 629, 738
MwoI GCNNNNNNNGC 7 cut(s) 347, 356, 737, 801, 967, 1412, 1418
NciI CCSGG 1 cut(s) 414
NdeII GATC 7 cut(s) 3, 19, 87, 136, 545, 889, 999
NlaIV GGNNCC 7 cut(s) 64, 249, 310, 358, 832, 891, 1109
NmeAIII GCCGAG 1 cut(s) 337
NmuCI GTSAC 2 cut(s) 67, 851
NspI RCATGY 7 cut(s) 242, 304, 433, 927, 940, 965, 1147
OliI CACNNNNGTG 1 cut(s) 745
PaqCI CACCTGC 1 cut(s) 716
PciI ACATGT 2 cut(s) 923, 936
PdmI GAANNNNTTC 1 cut(s) 1279
PflMI CCANNNNNTGG 1 cut(s) 162
PfoI TCCNGGA 1 cut(s) 412
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
Ppu21I YACGTR 1 cut(s) 195
PscI ACATGT 2 cut(s) 923, 936
PsiI TTATAA 1 cut(s) 978
Psp6I CCWGG 3 cut(s) 250, 607, 726
PspGI CCWGG 3 cut(s) 250, 607, 726
PspN4I GGNNCC 7 cut(s) 64, 249, 310, 358, 832, 891, 1109
PspPI GGNCC 2 cut(s) 390, 1107
PsuI RGATCY 2 cut(s) 136, 889
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
RseI CAYNNNNRTG 4 cut(s) 578, 745, 960, 1230
SaqAI TTAA 6 cut(s) 570, 875, 1070, 1158, 1181, 1287
Sau3AI GATC 7 cut(s) 3, 19, 87, 136, 545, 889, 999
Sau96I GGNCC 2 cut(s) 390, 1107
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 4 cut(s) 252, 414, 609, 728
SduI GDGCHC 2 cut(s) 936, 944
SfaNI GCATC 1 cut(s) 803
SmiMI CAYNNNNRTG 4 cut(s) 578, 745, 960, 1230
SmlI CTYRAG 1 cut(s) 689
SmoI CTYRAG 1 cut(s) 689
SnaBI TACGTA 1 cut(s) 195
Sse9I AATT 8 cut(s) 589, 603, 790, 1018, 1099, 1160, 1239, 1278
SsiI CCGC 4 cut(s) 388, 501, 538, 673
SspMI CTAG 4 cut(s) 23, 263, 635, 1403
StyD4I CCNGG 4 cut(s) 250, 412, 607, 726
StyI CCWWGG 3 cut(s) 541, 817, 1195
TaaI ACNGT 1 cut(s) 871
TaiI ACGT 2 cut(s) 197, 275
TaqI TCGA 1 cut(s) 243
TasI AATT 8 cut(s) 589, 603, 790, 1018, 1099, 1160, 1239, 1278
TatI WGTACW 1 cut(s) 435
TauI GCSGC 2 cut(s) 391, 675
Tru1I TTAA 6 cut(s) 570, 875, 1070, 1158, 1181, 1287
Tru9I TTAA 6 cut(s) 570, 875, 1070, 1158, 1181, 1287
TscAI CASTG 2 cut(s) 962, 1345
TseFI GTSAC 2 cut(s) 67, 851
TseI GCWGC 9 cut(s) 147, 378, 447, 750, 899, 902, 1084, 1222, 1412
Tsp45I GTSAC 2 cut(s) 67, 851
TspDTI ATGAA 4 cut(s) 398, 488, 1248, 1311
TspGWI ACGGA 1 cut(s) 100
TspRI CASTG 2 cut(s) 962, 1345
Van91I CCANNNNNTGG 1 cut(s) 162
XapI RAATTY 4 cut(s) 603, 1160, 1239, 1278
XceI RCATGY 7 cut(s) 242, 304, 433, 927, 940, 965, 1147
XmnI GAANNNNTTC 1 cut(s) 1279
XspI CTAG 4 cut(s) 23, 263, 635, 1403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.