Rroxscaffold_3G00238910

COBRA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0011644
Physical Location & Seq
Reverse (-)
27309680 .. 27312531
2852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00238910.1

Sequence Viewer

Length: 1395 bp
ATGGGTGGTGGTGGTGGTGGTGGTGGTGCCGTCACCTTGTCTCTGATGATGATCGTCTTCTTGTCTTTCATTTCCGTATGTTATGGATACGACCCATTAGATCCTTATGGCAACGTAACCATCACTTGGGATTTTCTCTCCCAGAGCGCCCCAGATACGTATGGCATAAAAGTATCAATATACAACCTGCAACAATACAGGCATGTCGAGGTGCCAGGATGGAAACTAGAATGGACGTGGGACAAGTCGGAAGTGATTTGGGACATGCGTGGTGCCGAGGCAGTTGAGCAAGGAGATTGCTCAGCGTTTATGGCTTCCGGTGCCGGACAGCTTCCTCATTGCTGCATGAAGCGGCCCGTCATCATTGACCTGCTTCCCGGAACTCCTTATAACATGCAGTACACCAATTGCTGTAAGGGAGGTGTTTTGTCATCCATGAACCAAGACCCTTCCAAGTATCTCTCCGCTTTTCAGATGAGCATTGGAAACTTTCTTGTTACCCGCCAAGGATCAGACAATCCCTTTGATAAGCTTAACATTACAATGCCTACCAATTTCAATCTCGGAATTCCTGGTTACACCTGTGGAGACGCGTTTCTAGTCCCCCCAACGAGGTTTTCTGATGATAAAGGACGCCGTTGGAAACAAACCCTTGAGACATGGAACATCACCTGCACCTACTCTCAGTTCCAGGCTTCTCGCGCACCAAAGTGCTGCGTGTCCTTGTCTGCCTTCTACAACACCACCATTGTCAATTGCCCTCGTTGCAGTTGTGGATGCCAAGGACTAGGAGGAGCCAAATGTATCAAGTCTGGTGACGAGCCTCCTCCTACTGTGTTAAAACTTCCACAGGAACCTCAAGCAGCAGCATTGCCTCCTCTGGTAACATGTTCGGAGCACATGTGCCCCATCAGAGTTCACTGGCATGTCAAGCAAAGTTATAAGGAGTATTGGAGGGTCAAGATCACAATCACCAATCTCAATTTTCTCAAAAACTATTCTGATTGGAACTTGGTCGTTCAGCACCCAAACTTAAAAAGCGTCAGGCAGCTTTTCAGCTTCAATTATCAGCCCCTCATGACCTATGGAAACATCAATGATACGGGCATGTTTTGGGGCATTAAATTCTATAACGATATGCTATTAACCTCGGGAAACCAAGGGAACGCACAAACAGAAATGTTGCTGCACAAGGATGAAGGAATTTTCACATTCAGAGAGGGATGGACTTTCCCAAGAAGAATTTCCTTCAATGGGGATGAATGTGTAATGCCCCCTCCAGATGACTACCCCACACTTCCCAGTGGAGCTTATACTATTGGAGCAAACCTCAACCCTTCCCTACTATTAGTCTCCTTCTTGTTCCTAGCCGTAGCAGCACCGGCTCTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COBRA

Protein Analysis

464

Amino Acids

51.73

Weight (kDa)

6.64

Isoelectric Point (pI)

35.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COBRA PF04833 54 - 228 7e-57 COBRA-like protein
COB_C PF25079 237 - 431 4.7e-49 COBRA family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011644)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09790 AT1G09790
fragaria_vesca FvH4_1g08930 FvH4_5g28720
malus_domestica MD08G1239300.v1.1 MD15G1430900.v1.1
prunus_persica Prupe.1G575900_v2.0.a1 Prupe.1G575900_v2.0.a1
pyrus_communis pycom08g20760
rosa_chinensis RchiOBHm_Chr7g0220881
rosa_laevigata RLG00000002195 RLG00000015287
rosa_multiflora Rmu_ssc0000286.1_g000004
rosa_roxburghii Rroxscaffold_3G00238910
rosa_rugosa Rorug07G0198100
rosa_samantha Rh7AG338300 Rh7BG329100 Rh7CG356400 Rh7DG337200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 390, 942
AarI CACCTGC 1 cut(s) 680
Acc36I ACCTGC 3 cut(s) 195, 378, 680
AccB1I GGYRCC 4 cut(s) 26, 211, 272, 320
AccB7I CCANNNNNTGG 1 cut(s) 126
AccII CGCG 2 cut(s) 593, 702
AciI CCGC 3 cut(s) 352, 465, 502
AclWI GGATC 2 cut(s) 95, 517
AcsI RAATTY 4 cut(s) 567, 1124, 1203, 1242
AcyI GRCGYC 1 cut(s) 634
AfaI GTAC 1 cut(s) 401
AfiI CCNNNNNNNGG 3 cut(s) 126, 612, 1254
AflIII ACRYGT 3 cut(s) 591, 887, 900
AgsI TTSAA 3 cut(s) 559, 1063, 1252
AjiI CACGTC 1 cut(s) 237
AjnI CCWGG 3 cut(s) 214, 571, 690
AjuI GAANNNNNNNTTGG 4 cut(s) 601, 633, 1228, 1260
AleI CACNNNNGTG 1 cut(s) 709
AluBI AGCT 5 cut(s) 331, 532, 1051, 1059, 1310
AluI AGCT 5 cut(s) 331, 532, 1051, 1059, 1310
Alw21I GWGCWC 1 cut(s) 900
Alw26I GTCTC 4 cut(s) 45, 582, 650, 1357
AlwI GGATC 2 cut(s) 95, 517
Ama87I CYCGRG 1 cut(s) 1150
AoxI GGCC 1 cut(s) 353
ApeKI GCWGC 7 cut(s) 342, 714, 863, 866, 1048, 1186, 1376
ApoI RAATTY 4 cut(s) 567, 1124, 1203, 1242
ArsI GACNNNNNNTTYG 2 cut(s) 506, 538
Asp700I GAANNNNTTC 1 cut(s) 1243
AspLEI GCGC 2 cut(s) 149, 704
AspS9I GGNCC 1 cut(s) 354
AsuC2I CCSGG 1 cut(s) 378
AsuHPI GGTGA 4 cut(s) 25, 661, 827, 964
AvaI CYCGRG 1 cut(s) 1150
BaeGI GKGCMC 1 cut(s) 908
BanI GGYRCC 4 cut(s) 26, 211, 272, 320
BbsI GAAGAC 1 cut(s) 49
Bbv12I GWGCWC 1 cut(s) 900
BbvI GCAGC 7 cut(s) 329, 701, 875, 878, 1060, 1173, 1388
BccI CCATC 4 cut(s) 128, 213, 917, 1218
BceAI ACGGC 3 cut(s) 14, 621, 1355
BciT130I CCWGG 3 cut(s) 216, 573, 692
BciVI GTATCC 1 cut(s) 80
BcnI CCSGG 1 cut(s) 378
BcoDI GTCTC 4 cut(s) 45, 582, 650, 1357
BfaI CTAG 4 cut(s) 227, 599, 788, 1367
BfoI RGCGCY 1 cut(s) 150
BfuAI ACCTGC 3 cut(s) 195, 378, 680
BfuI GTATCC 1 cut(s) 80
BisI GCNGC 8 cut(s) 343, 353, 715, 864, 867, 1049, 1187, 1377
BlpI GCTNAGC 1 cut(s) 301
BlsI GCNGC 8 cut(s) 344, 354, 716, 865, 868, 1050, 1188, 1378
Bme1390I CCNGG 4 cut(s) 216, 378, 573, 692
BmeT110I CYCGRG 1 cut(s) 1150
BmgBI CACGTC 1 cut(s) 237
BmgT120I GGNCC 1 cut(s) 354
BmiI GGNNCC 6 cut(s) 28, 213, 274, 322, 796, 855
BmrFI CCNGG 4 cut(s) 216, 378, 573, 692
BmrI ACTGGG 1 cut(s) 1296
BmsI GCATC 1 cut(s) 767
BmuI ACTGGG 1 cut(s) 1296
BpiI GAAGAC 1 cut(s) 49
BplI GAGNNNNNCTC 2 cut(s) 1314, 1346
BpmI CTGGAG 1 cut(s) 1263
Bpu1102I GCTNAGC 1 cut(s) 301
BpuEI CTTGAG 2 cut(s) 674, 843
BpuMI CCSGG 1 cut(s) 378
BsaAI YACGTR 1 cut(s) 159
BsaBI GATNNNNATC 2 cut(s) 50, 968
BsaHI GRCGYC 1 cut(s) 634
BsaJI CCNNGG 5 cut(s) 276, 505, 781, 1149, 1159
BsaWI WCCGGW 1 cut(s) 317
BsaXI ACNNNNNCTCC 2 cut(s) 887, 917
Bsc4I CCNNNNNNNGG 3 cut(s) 126, 612, 1254
Bse118I RCCGGY 1 cut(s) 1381
Bse1I ACTGG 2 cut(s) 926, 1302
Bse3DI GCAATG 2 cut(s) 337, 869
Bse8I GATNNNNATC 2 cut(s) 50, 968
BseBI CCWGG 3 cut(s) 216, 573, 692
BseDI CCNNGG 5 cut(s) 276, 505, 781, 1149, 1159
BseGI GGATG 6 cut(s) 224, 431, 782, 1201, 1229, 1264
BseJI GATNNNNATC 2 cut(s) 50, 968
BseLI CCNNNNNNNGG 3 cut(s) 126, 612, 1254
BseMI GCAATG 2 cut(s) 337, 869
BseMII CTCAG 2 cut(s) 315, 698
BseNI ACTGG 2 cut(s) 926, 1302
BseRI GAGGAG 3 cut(s) 807, 816, 867
BseSI GKGCMC 1 cut(s) 908
BseXI GCAGC 7 cut(s) 329, 701, 875, 878, 1060, 1173, 1388
BsgI GTGCAG 2 cut(s) 658, 1172
Bsh1236I CGCG 2 cut(s) 593, 702
BshFI GGCC 1 cut(s) 355
BshNI GGYRCC 4 cut(s) 26, 211, 272, 320
BsiHKAI GWGCWC 1 cut(s) 900
BsiHKCI CYCGRG 1 cut(s) 1150
BsiSI CCGG 4 cut(s) 318, 324, 378, 1382
BslFI GGGAC 3 cut(s) 254, 275, 587
BslI CCNNNNNNNGG 3 cut(s) 126, 612, 1254
BsmAI GTCTC 4 cut(s) 45, 582, 650, 1357
BsmBI CGTCTC 1 cut(s) 582
BsmFI GGGAC 3 cut(s) 254, 275, 587
BsnI GGCC 1 cut(s) 355
BsoBI CYCGRG 1 cut(s) 1150
Bsp1286I GDGCHC 2 cut(s) 900, 908
Bsp143I GATC 4 cut(s) 51, 100, 509, 963
Bsp1720I GCTNAGC 1 cut(s) 301
BspACI CCGC 3 cut(s) 352, 465, 502
BspANI GGCC 1 cut(s) 355
BspCNI CTCAG 2 cut(s) 314, 697
BspFNI CGCG 2 cut(s) 593, 702
BspHI TCATGA 1 cut(s) 1077
BspLI GGNNCC 6 cut(s) 28, 213, 274, 322, 796, 855
BspMI ACCTGC 3 cut(s) 195, 378, 680
BspPI GGATC 2 cut(s) 95, 517
BspT107I GGYRCC 4 cut(s) 26, 211, 272, 320
BsrDI GCAATG 2 cut(s) 337, 869
BsrFI RCCGGY 1 cut(s) 1381
BsrI ACTGG 2 cut(s) 926, 1302
BssAI RCCGGY 1 cut(s) 1381
BssECI CCNNGG 5 cut(s) 276, 505, 781, 1149, 1159
BssMI GATC 4 cut(s) 51, 100, 509, 963
BssNI GRCGYC 1 cut(s) 634
BssT1I CCWWGG 3 cut(s) 505, 781, 1159
Bst2UI CCWGG 3 cut(s) 216, 573, 692
Bst4CI ACNGT 1 cut(s) 835
BstACI GRCGYC 1 cut(s) 634
BstBAI YACGTR 1 cut(s) 159
BstDEI CTNAG 2 cut(s) 301, 684
BstF5I GGATG 6 cut(s) 224, 431, 782, 1201, 1229, 1264
BstFNI CGCG 2 cut(s) 593, 702
BstH2I RGCGCY 1 cut(s) 150
BstHHI GCGC 2 cut(s) 149, 704
BstKTI GATC 4 cut(s) 54, 103, 512, 966
BstMAI GTCTC 4 cut(s) 45, 582, 650, 1357
BstMBI GATC 4 cut(s) 51, 100, 509, 963
BstMWI GCNNNNNNNGC 7 cut(s) 311, 320, 701, 765, 931, 1376, 1382
BstNI CCWGG 3 cut(s) 216, 573, 692
BstNSI RCATGY 7 cut(s) 206, 268, 397, 891, 904, 929, 1111
BstSCI CCNGG 4 cut(s) 214, 376, 571, 690
BstSLI GKGCMC 1 cut(s) 908
BstSNI TACGTA 1 cut(s) 159
BstUI CGCG 2 cut(s) 593, 702
BstV1I GCAGC 7 cut(s) 329, 701, 875, 878, 1060, 1173, 1388
BstV2I GAAGAC 1 cut(s) 49
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BsuI GTATCC 1 cut(s) 80
BsuRI GGCC 1 cut(s) 355
BtrI CACGTC 1 cut(s) 237
BtsCI GGATG 6 cut(s) 224, 431, 782, 1201, 1229, 1264
BtsIMutI CAGTG 2 cut(s) 919, 1309
BveI ACCTGC 3 cut(s) 195, 378, 680
CciI TCATGA 1 cut(s) 1077
CfoI GCGC 2 cut(s) 149, 704
Cfr10I RCCGGY 1 cut(s) 1381
Cfr13I GGNCC 1 cut(s) 354
CseI GACGC 3 cut(s) 599, 642, 1030
Csp6I GTAC 1 cut(s) 400
CviQI GTAC 1 cut(s) 400
DdeI CTNAG 2 cut(s) 301, 684
DpnI GATC 4 cut(s) 53, 102, 511, 965
DpnII GATC 4 cut(s) 51, 100, 509, 963
Eco105I TACGTA 1 cut(s) 159
Eco130I CCWWGG 3 cut(s) 505, 781, 1159
Eco88I CYCGRG 1 cut(s) 1150
EcoRI GAATTC 1 cut(s) 567
EcoRII CCWGG 3 cut(s) 214, 571, 690
EcoT14I CCWWGG 3 cut(s) 505, 781, 1159
ErhI CCWWGG 3 cut(s) 505, 781, 1159
Esp3I CGTCTC 1 cut(s) 582
FaqI GGGAC 3 cut(s) 254, 275, 587
FauI CCCGC 1 cut(s) 509
Fnu4HI GCNGC 8 cut(s) 343, 353, 715, 864, 867, 1049, 1187, 1377
FokI GGATG 6 cut(s) 231, 418, 789, 1208, 1236, 1271
Fsp4HI GCNGC 8 cut(s) 343, 353, 715, 864, 867, 1049, 1187, 1377
FspBI CTAG 4 cut(s) 227, 599, 788, 1367
GlaI GCGC 2 cut(s) 148, 703
GluI GCNGC 8 cut(s) 343, 353, 715, 864, 867, 1049, 1187, 1377
GsuI CTGGAG 1 cut(s) 1263
HaeII RGCGCY 1 cut(s) 150
HaeIII GGCC 1 cut(s) 355
HapII CCGG 4 cut(s) 318, 324, 378, 1382
HgaI GACGC 3 cut(s) 599, 642, 1030
HhaI GCGC 2 cut(s) 149, 704
Hin1I GRCGYC 1 cut(s) 634
Hin6I GCGC 2 cut(s) 147, 702
HinP1I GCGC 2 cut(s) 147, 702
HindIII AAGCTT 1 cut(s) 530
HpaII CCGG 4 cut(s) 318, 324, 378, 1382
HphI GGTGA 4 cut(s) 25, 661, 827, 964
Hpy166II GTNNAC 2 cut(s) 402, 919
Hpy188III TCNNGA 4 cut(s) 961, 1078, 1152, 1280
Hpy8I GTNNAC 2 cut(s) 402, 919
HpyAV CCTTC 6 cut(s) 459, 742, 1193, 1258, 1347, 1366
HpyCH4III ACNGT 1 cut(s) 835
HpyCH4IV ACGT 3 cut(s) 114, 158, 236
HpyCH4V TGCA 6 cut(s) 190, 345, 397, 675, 768, 1189
HpyF10VI GCNNNNNNNGC 7 cut(s) 311, 320, 701, 765, 931, 1376, 1382
HpyF3I CTNAG 2 cut(s) 301, 684
HpySE526I ACGT 3 cut(s) 114, 158, 236
Hsp92I GRCGYC 1 cut(s) 634
HspAI GCGC 2 cut(s) 147, 702
Kzo9I GATC 4 cut(s) 51, 100, 509, 963
LmnI GCTCC 4 cut(s) 794, 895, 1307, 1322
Lsp1109I GCAGC 7 cut(s) 329, 701, 875, 878, 1060, 1173, 1388
LweI GCATC 1 cut(s) 767
MaeI CTAG 4 cut(s) 227, 599, 788, 1367
MaeII ACGT 3 cut(s) 114, 158, 236
MaeIII GTNAC 6 cut(s) 31, 115, 496, 575, 815, 883
MalI GATC 4 cut(s) 53, 102, 511, 965
MboI GATC 4 cut(s) 51, 100, 509, 963
MboII GAAGA 2 cut(s) 49, 1251
MfeI CAATTG 2 cut(s) 406, 754
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 2 cut(s) 900, 908
MluCI AATT 9 cut(s) 406, 553, 567, 754, 982, 1063, 1124, 1203, 1242
MluI ACGCGT 1 cut(s) 591
MmeI TCCRAC 2 cut(s) 228, 620
MroXI GAANNNNTTC 1 cut(s) 1243
MseI TTAA 5 cut(s) 534, 839, 1034, 1122, 1145
MslI CAYNNNNRTG 4 cut(s) 542, 709, 924, 1194
MspI CCGG 4 cut(s) 318, 324, 378, 1382
MspR9I CCNGG 4 cut(s) 216, 378, 573, 692
MunI CAATTG 2 cut(s) 406, 754
MvaI CCWGG 3 cut(s) 216, 573, 692
MvnI CGCG 2 cut(s) 593, 702
MwoI GCNNNNNNNGC 7 cut(s) 311, 320, 701, 765, 931, 1376, 1382
NciI CCSGG 1 cut(s) 378
NdeII GATC 4 cut(s) 51, 100, 509, 963
NlaIV GGNNCC 6 cut(s) 28, 213, 274, 322, 796, 855
NmeAIII GCCGAG 1 cut(s) 301
NmuCI GTSAC 2 cut(s) 31, 815
NspI RCATGY 7 cut(s) 206, 268, 397, 891, 904, 929, 1111
OliI CACNNNNGTG 1 cut(s) 709
PagI TCATGA 1 cut(s) 1077
PaqCI CACCTGC 1 cut(s) 680
PciI ACATGT 2 cut(s) 887, 900
PdmI GAANNNNTTC 1 cut(s) 1243
PflMI CCANNNNNTGG 1 cut(s) 126
PfoI TCCNGGA 1 cut(s) 376
PkrI GCNGC 8 cut(s) 344, 354, 716, 865, 868, 1050, 1188, 1378
Ppu21I YACGTR 1 cut(s) 159
PscI ACATGT 2 cut(s) 887, 900
PsiI TTATAA 2 cut(s) 390, 942
Psp6I CCWGG 3 cut(s) 214, 571, 690
PspGI CCWGG 3 cut(s) 214, 571, 690
PspN4I GGNNCC 6 cut(s) 28, 213, 274, 322, 796, 855
PspPI GGNCC 1 cut(s) 354
PsuI RGATCY 1 cut(s) 100
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
RseI CAYNNNNRTG 4 cut(s) 542, 709, 924, 1194
SaqAI TTAA 5 cut(s) 534, 839, 1034, 1122, 1145
SatI GCNGC 8 cut(s) 343, 353, 715, 864, 867, 1049, 1187, 1377
Sau3AI GATC 4 cut(s) 51, 100, 509, 963
Sau96I GGNCC 1 cut(s) 354
ScrFI CCNGG 4 cut(s) 216, 378, 573, 692
SduI GDGCHC 2 cut(s) 900, 908
SfaNI GCATC 1 cut(s) 767
SmiMI CAYNNNNRTG 4 cut(s) 542, 709, 924, 1194
SmlI CTYRAG 2 cut(s) 653, 858
SmoI CTYRAG 2 cut(s) 653, 858
SnaBI TACGTA 1 cut(s) 159
Sse9I AATT 9 cut(s) 406, 553, 567, 754, 982, 1063, 1124, 1203, 1242
SsiI CCGC 3 cut(s) 352, 465, 502
SspMI CTAG 4 cut(s) 227, 599, 788, 1367
StyD4I CCNGG 4 cut(s) 214, 376, 571, 690
StyI CCWWGG 3 cut(s) 505, 781, 1159
TaaI ACNGT 1 cut(s) 835
TaiI ACGT 3 cut(s) 117, 161, 239
TaqI TCGA 1 cut(s) 207
TasI AATT 9 cut(s) 406, 553, 567, 754, 982, 1063, 1124, 1203, 1242
TatI WGTACW 1 cut(s) 399
TauI GCSGC 1 cut(s) 355
Tru1I TTAA 5 cut(s) 534, 839, 1034, 1122, 1145
Tru9I TTAA 5 cut(s) 534, 839, 1034, 1122, 1145
TscAI CASTG 2 cut(s) 926, 1309
TseFI GTSAC 2 cut(s) 31, 815
TseI GCWGC 7 cut(s) 342, 714, 863, 866, 1048, 1186, 1376
Tsp45I GTSAC 2 cut(s) 31, 815
TspDTI ATGAA 5 cut(s) 58, 362, 452, 1212, 1275
TspGWI ACGGA 1 cut(s) 64
TspRI CASTG 2 cut(s) 926, 1309
Van91I CCANNNNNTGG 1 cut(s) 126
XapI RAATTY 4 cut(s) 567, 1124, 1203, 1242
XceI RCATGY 7 cut(s) 206, 268, 397, 891, 904, 929, 1111
XmnI GAANNNNTTC 1 cut(s) 1243
XspI CTAG 4 cut(s) 227, 599, 788, 1367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.