Rh7CG356400

COBRA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0011644
Physical Location & Seq
Forward (+)
44004181 .. 44007207
3027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG356400.1

Sequence Viewer

Length: 1380 bp
ATGGGTGGTGGTGGTGCCGTCACCTTGTCTCTGACGATGATCATCTTCTTGTCTTCCATTTCCGTATGTTATGGATACGACCCATCAGATCCTTATGGTAACGTAACCATCACTTGGGATTTTCTCTCCCAGAGCGGCCCAGATACGTATGGCATAAAAGTATCAATATACAACCTGCAACAATACAGGCATGTCGAGGTGCCAGGATGGAAACTAGAATGGACGTGGAACAAGTCGGAAGTGATTTGGGACATGCGTGGTGCCGAGGCAGTTGAGCAAGGAGATTGCTCAGCGTTTATGGCTTCCGGTGCTGGACAGCTTCCTCATTGCTGCATGAAGCGGCCCGTCATCATTGACCTGCTTCCCGGAACTCCTTACAACATGCAGTACACCAACTGCTGCAAGGGAGGTGTTTTGTCATCCATGAACCAAGACCCTTCCAAGTATCTCTCCGCCTTTCAGATGAGCATTGGAAACTTTCTTGTTACCCGCCAAGGATCAGACAATCCCTTTGATAAGCTTAACATTACAATGCCTACCAATTTCAATCTTGGAATTCCTGGTTACACCTGTGGAGACGCGTTTCTAGTCCCCCCAACGAGGTTTTCTGATGATAAAGGACGCCGCTGGAAACAAACCCTTGAGACATGGAACATCACCTGCACCTACTCTCAGTTCCAGGCTTCTCGCGCACCAAAGTGCTGCGTGTCCTTGTCTGCCTTCTACAACACCACCATTGTCAATTGCCCTCGTTGCAGTTGTGGATGCCAAGGACTAGGAGGAGCCAAATGTATCAAGTCTGGTGACGAGCCTCCTTCTACTGTGCTAAAACTTCCACAGGATCCACAAGCAGCAGCATTGCCTCCTCTGGTAACATGTTCGGAGCACATGTGCCCCATCAGAGTTCACTGGCATGTCAAGCAGAGTTATAAGGAGTATTGGAGGGTCAAGATCACAATCACCAATCTCAATTTTCTCAAAAACTATTCTGATTGGAACTTGGTCGTTCAGCACCCAAACTTAAAAAGCGTCAGGCAGCTTTTCAGCTTCAATTATCGGCCCCTGACCTATGGAAACATCAATGATACGGGCATGTTTTGGGGCATTAAATTCTATAACGATATGCTATTAACCTCGGGAAACCAAGGGAACGCACAAACAGAAATGTTGCTGCACAAGGATGAAGGAATTTTCACATTCAGAGAAGGATGGACTTTCCCAAGAAGAATTTCCTTCAATGGGGATGAATGTGTAATGCCCCCTCCAGATGACTACCCCACACTTCCCAGTGGAGCTTATACTATTGGAGCAAACCTCAACCCTTCCCTACTATTAGTCTCCTTCTTGTTCCTAGCAGTAGCAGCACCGGCTCTTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COBRA

Protein Analysis

459

Amino Acids

51.22

Weight (kDa)

7.41

Isoelectric Point (pI)

35.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COBRA PF04833 50 - 224 4.9e-57 COBRA-like protein
COB_C PF25079 233 - 426 8.9e-50 COBRA family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011644)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09790 AT1G09790
fragaria_vesca FvH4_1g08930 FvH4_5g28720
malus_domestica MD08G1239300.v1.1 MD15G1430900.v1.1
prunus_persica Prupe.1G575900_v2.0.a1 Prupe.1G575900_v2.0.a1
pyrus_communis pycom08g20760
rosa_chinensis RchiOBHm_Chr7g0220881
rosa_laevigata RLG00000002195 RLG00000015287
rosa_multiflora Rmu_ssc0000286.1_g000004
rosa_roxburghii Rroxscaffold_3G00238910
rosa_rugosa Rorug07G0198100
rosa_samantha Rh7AG338300 Rh7BG329100 Rh7CG356400 Rh7DG337200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 930
AarI CACCTGC 1 cut(s) 668
Acc36I ACCTGC 3 cut(s) 183, 366, 668
AccB1I GGYRCC 3 cut(s) 14, 199, 260
AccB7I CCANNNNNTGG 1 cut(s) 114
AccBSI CCGCTC 1 cut(s) 135
AccII CGCG 2 cut(s) 581, 690
AciI CCGC 5 cut(s) 135, 340, 453, 490, 625
AclWI GGATC 4 cut(s) 83, 505, 836, 849
AcsI RAATTY 4 cut(s) 555, 1109, 1188, 1227
AcyI GRCGYC 1 cut(s) 622
AfaI GTAC 1 cut(s) 389
AfiI CCNNNNNNNGG 3 cut(s) 114, 600, 1239
AflIII ACRYGT 3 cut(s) 579, 875, 888
AgsI TTSAA 3 cut(s) 547, 1051, 1237
AjiI CACGTC 1 cut(s) 225
AjnI CCWGG 3 cut(s) 202, 559, 678
AjuI GAANNNNNNNTTGG 4 cut(s) 589, 621, 1213, 1245
AleI CACNNNNGTG 1 cut(s) 697
AluBI AGCT 5 cut(s) 319, 520, 1039, 1047, 1295
AluI AGCT 5 cut(s) 319, 520, 1039, 1047, 1295
Alw21I GWGCWC 1 cut(s) 888
Alw26I GTCTC 4 cut(s) 33, 570, 638, 1342
AlwI GGATC 4 cut(s) 83, 505, 836, 849
Ama87I CYCGRG 1 cut(s) 1135
AoxI GGCC 3 cut(s) 136, 341, 1058
ApeKI GCWGC 8 cut(s) 330, 399, 702, 851, 854, 1036, 1171, 1361
ApoI RAATTY 4 cut(s) 555, 1109, 1188, 1227
ArsI GACNNNNNNTTYG 2 cut(s) 494, 526
Asp700I GAANNNNTTC 1 cut(s) 1228
AspLEI GCGC 1 cut(s) 692
AspS9I GGNCC 3 cut(s) 137, 342, 1059
AsuC2I CCSGG 1 cut(s) 366
AsuHPI GGTGA 4 cut(s) 13, 649, 815, 952
AvaI CYCGRG 1 cut(s) 1135
BaeGI GKGCMC 1 cut(s) 896
BamHI GGATCC 1 cut(s) 841
BanI GGYRCC 3 cut(s) 14, 199, 260
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 888
BbvI GCAGC 8 cut(s) 317, 386, 689, 863, 866, 1048, 1158, 1373
BccI CCATC 5 cut(s) 91, 116, 201, 905, 1203
BceAI ACGGC 1 cut(s) 2
BciT130I CCWGG 3 cut(s) 204, 561, 680
BciVI GTATCC 1 cut(s) 68
BclI TGATCA 1 cut(s) 39
BcnI CCSGG 1 cut(s) 366
BcoDI GTCTC 4 cut(s) 33, 570, 638, 1342
BfaI CTAG 4 cut(s) 215, 587, 776, 1352
BfuAI ACCTGC 3 cut(s) 183, 366, 668
BfuI GTATCC 1 cut(s) 68
BlpI GCTNAGC 1 cut(s) 289
Bme1390I CCNGG 4 cut(s) 204, 366, 561, 680
BmeT110I CYCGRG 1 cut(s) 1135
BmgBI CACGTC 1 cut(s) 225
BmgT120I GGNCC 3 cut(s) 137, 342, 1059
BmiI GGNNCC 6 cut(s) 16, 201, 262, 784, 843, 1061
BmrFI CCNGG 4 cut(s) 204, 366, 561, 680
BmrI ACTGGG 1 cut(s) 1281
BmsI GCATC 1 cut(s) 755
BmuI ACTGGG 1 cut(s) 1281
BpiI GAAGAC 1 cut(s) 45
BplI GAGNNNNNCTC 2 cut(s) 1299, 1331
BpmI CTGGAG 1 cut(s) 1248
Bpu1102I GCTNAGC 1 cut(s) 289
BpuEI CTTGAG 1 cut(s) 662
BpuMI CCSGG 1 cut(s) 366
BsaAI YACGTR 1 cut(s) 147
BsaBI GATNNNNATC 2 cut(s) 41, 956
BsaHI GRCGYC 1 cut(s) 622
BsaJI CCNNGG 5 cut(s) 264, 493, 769, 1134, 1144
BsaWI WCCGGW 1 cut(s) 305
BsaXI ACNNNNNCTCC 2 cut(s) 875, 905
Bsc4I CCNNNNNNNGG 3 cut(s) 114, 600, 1239
Bse118I RCCGGY 1 cut(s) 1366
Bse1I ACTGG 2 cut(s) 914, 1287
Bse3DI GCAATG 2 cut(s) 325, 857
Bse8I GATNNNNATC 2 cut(s) 41, 956
BseBI CCWGG 3 cut(s) 204, 561, 680
BseDI CCNNGG 5 cut(s) 264, 493, 769, 1134, 1144
BseGI GGATG 6 cut(s) 212, 419, 770, 1186, 1214, 1249
BseJI GATNNNNATC 2 cut(s) 41, 956
BseLI CCNNNNNNNGG 3 cut(s) 114, 600, 1239
BseMI GCAATG 2 cut(s) 325, 857
BseMII CTCAG 2 cut(s) 303, 686
BseNI ACTGG 2 cut(s) 914, 1287
BseRI GAGGAG 2 cut(s) 795, 855
BseSI GKGCMC 1 cut(s) 896
BseXI GCAGC 8 cut(s) 317, 386, 689, 863, 866, 1048, 1158, 1373
BsgI GTGCAG 2 cut(s) 646, 1157
Bsh1236I CGCG 2 cut(s) 581, 690
BshFI GGCC 3 cut(s) 138, 343, 1060
BshNI GGYRCC 3 cut(s) 14, 199, 260
BsiHKAI GWGCWC 1 cut(s) 888
BsiHKCI CYCGRG 1 cut(s) 1135
BsiSI CCGG 3 cut(s) 306, 366, 1367
BslFI GGGAC 2 cut(s) 263, 575
BslI CCNNNNNNNGG 3 cut(s) 114, 600, 1239
BsmAI GTCTC 4 cut(s) 33, 570, 638, 1342
BsmBI CGTCTC 1 cut(s) 570
BsmFI GGGAC 2 cut(s) 263, 575
BsnI GGCC 3 cut(s) 138, 343, 1060
BsoBI CYCGRG 1 cut(s) 1135
Bsp1286I GDGCHC 2 cut(s) 888, 896
Bsp143I GATC 5 cut(s) 39, 88, 497, 841, 951
Bsp1720I GCTNAGC 1 cut(s) 289
BspACI CCGC 5 cut(s) 135, 340, 453, 490, 625
BspANI GGCC 3 cut(s) 138, 343, 1060
BspCNI CTCAG 2 cut(s) 302, 685
BspFNI CGCG 2 cut(s) 581, 690
BspLI GGNNCC 6 cut(s) 16, 201, 262, 784, 843, 1061
BspMI ACCTGC 3 cut(s) 183, 366, 668
BspPI GGATC 4 cut(s) 83, 505, 836, 849
BspT107I GGYRCC 3 cut(s) 14, 199, 260
BsrBI CCGCTC 1 cut(s) 135
BsrDI GCAATG 2 cut(s) 325, 857
BsrFI RCCGGY 1 cut(s) 1366
BsrI ACTGG 2 cut(s) 914, 1287
BssAI RCCGGY 1 cut(s) 1366
BssECI CCNNGG 5 cut(s) 264, 493, 769, 1134, 1144
BssMI GATC 5 cut(s) 39, 88, 497, 841, 951
BssNI GRCGYC 1 cut(s) 622
BssT1I CCWWGG 3 cut(s) 493, 769, 1144
Bst2UI CCWGG 3 cut(s) 204, 561, 680
Bst4CI ACNGT 1 cut(s) 823
BstACI GRCGYC 1 cut(s) 622
BstBAI YACGTR 1 cut(s) 147
BstDEI CTNAG 2 cut(s) 289, 672
BstF5I GGATG 6 cut(s) 212, 419, 770, 1186, 1214, 1249
BstFNI CGCG 2 cut(s) 581, 690
BstHHI GCGC 1 cut(s) 692
BstKTI GATC 5 cut(s) 42, 91, 500, 844, 954
BstMAI GTCTC 4 cut(s) 33, 570, 638, 1342
BstMBI GATC 5 cut(s) 39, 88, 497, 841, 951
BstMWI GCNNNNNNNGC 7 cut(s) 299, 308, 689, 753, 919, 1361, 1367
BstNI CCWGG 3 cut(s) 204, 561, 680
BstNSI RCATGY 7 cut(s) 194, 256, 385, 879, 892, 917, 1096
BstSCI CCNGG 4 cut(s) 202, 364, 559, 678
BstSLI GKGCMC 1 cut(s) 896
BstSNI TACGTA 1 cut(s) 147
BstUI CGCG 2 cut(s) 581, 690
BstV1I GCAGC 8 cut(s) 317, 386, 689, 863, 866, 1048, 1158, 1373
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 2 cut(s) 88, 841
BstYI RGATCY 2 cut(s) 88, 841
BsuI GTATCC 1 cut(s) 68
BsuRI GGCC 3 cut(s) 138, 343, 1060
BtrI CACGTC 1 cut(s) 225
BtsCI GGATG 6 cut(s) 212, 419, 770, 1186, 1214, 1249
BtsIMutI CAGTG 2 cut(s) 907, 1294
BveI ACCTGC 3 cut(s) 183, 366, 668
CfoI GCGC 1 cut(s) 692
Cfr10I RCCGGY 1 cut(s) 1366
Cfr13I GGNCC 3 cut(s) 137, 342, 1059
CseI GACGC 3 cut(s) 587, 630, 1018
Csp6I GTAC 1 cut(s) 388
CviQI GTAC 1 cut(s) 388
DdeI CTNAG 2 cut(s) 289, 672
DpnI GATC 5 cut(s) 41, 90, 499, 843, 953
DpnII GATC 5 cut(s) 39, 88, 497, 841, 951
EciI GGCGGA 1 cut(s) 442
Eco105I TACGTA 1 cut(s) 147
Eco130I CCWWGG 3 cut(s) 493, 769, 1144
Eco88I CYCGRG 1 cut(s) 1135
EcoRI GAATTC 1 cut(s) 555
EcoRII CCWGG 3 cut(s) 202, 559, 678
EcoT14I CCWWGG 3 cut(s) 493, 769, 1144
ErhI CCWWGG 3 cut(s) 493, 769, 1144
Esp3I CGTCTC 1 cut(s) 570
FaqI GGGAC 2 cut(s) 263, 575
FauI CCCGC 1 cut(s) 497
FbaI TGATCA 1 cut(s) 39
FokI GGATG 6 cut(s) 219, 406, 777, 1193, 1221, 1256
FspBI CTAG 4 cut(s) 215, 587, 776, 1352
GlaI GCGC 1 cut(s) 691
GsuI CTGGAG 1 cut(s) 1248
HaeIII GGCC 3 cut(s) 138, 343, 1060
HapII CCGG 3 cut(s) 306, 366, 1367
HgaI GACGC 3 cut(s) 587, 630, 1018
HhaI GCGC 1 cut(s) 692
Hin1I GRCGYC 1 cut(s) 622
Hin6I GCGC 1 cut(s) 690
HinP1I GCGC 1 cut(s) 690
HindIII AAGCTT 1 cut(s) 518
HpaII CCGG 3 cut(s) 306, 366, 1367
HphI GGTGA 4 cut(s) 13, 649, 815, 952
Hpy166II GTNNAC 2 cut(s) 390, 907
Hpy188III TCNNGA 3 cut(s) 949, 1137, 1265
Hpy8I GTNNAC 2 cut(s) 390, 907
HpyAV CCTTC 8 cut(s) 447, 730, 825, 1178, 1199, 1243, 1332, 1351
HpyCH4III ACNGT 1 cut(s) 823
HpyCH4IV ACGT 3 cut(s) 102, 146, 224
HpyCH4V TGCA 7 cut(s) 178, 333, 385, 402, 663, 756, 1174
HpyF10VI GCNNNNNNNGC 7 cut(s) 299, 308, 689, 753, 919, 1361, 1367
HpyF3I CTNAG 2 cut(s) 289, 672
HpySE526I ACGT 3 cut(s) 102, 146, 224
Hsp92I GRCGYC 1 cut(s) 622
HspAI GCGC 1 cut(s) 690
Ksp22I TGATCA 1 cut(s) 39
Kzo9I GATC 5 cut(s) 39, 88, 497, 841, 951
LmnI GCTCC 4 cut(s) 782, 883, 1292, 1307
Lsp1109I GCAGC 8 cut(s) 317, 386, 689, 863, 866, 1048, 1158, 1373
LweI GCATC 1 cut(s) 755
MaeI CTAG 4 cut(s) 215, 587, 776, 1352
MaeII ACGT 3 cut(s) 102, 146, 224
MaeIII GTNAC 7 cut(s) 19, 98, 103, 484, 563, 803, 871
MalI GATC 5 cut(s) 41, 90, 499, 843, 953
MbiI CCGCTC 1 cut(s) 135
MboI GATC 5 cut(s) 39, 88, 497, 841, 951
MboII GAAGA 3 cut(s) 37, 45, 1236
MfeI CAATTG 1 cut(s) 742
MflI RGATCY 2 cut(s) 88, 841
MhlI GDGCHC 2 cut(s) 888, 896
MluCI AATT 8 cut(s) 541, 555, 742, 970, 1051, 1109, 1188, 1227
MluI ACGCGT 1 cut(s) 579
MmeI TCCRAC 1 cut(s) 216
MroXI GAANNNNTTC 1 cut(s) 1228
MseI TTAA 4 cut(s) 522, 1022, 1107, 1130
MslI CAYNNNNRTG 4 cut(s) 530, 697, 912, 1179
MspA1I CMGCKG 1 cut(s) 627
MspI CCGG 3 cut(s) 306, 366, 1367
MspR9I CCNGG 4 cut(s) 204, 366, 561, 680
MunI CAATTG 1 cut(s) 742
MvaI CCWGG 3 cut(s) 204, 561, 680
MvnI CGCG 2 cut(s) 581, 690
MwoI GCNNNNNNNGC 7 cut(s) 299, 308, 689, 753, 919, 1361, 1367
NciI CCSGG 1 cut(s) 366
NdeII GATC 5 cut(s) 39, 88, 497, 841, 951
NlaIV GGNNCC 6 cut(s) 16, 201, 262, 784, 843, 1061
NmeAIII GCCGAG 1 cut(s) 289
NmuCI GTSAC 2 cut(s) 19, 803
NspI RCATGY 7 cut(s) 194, 256, 385, 879, 892, 917, 1096
OliI CACNNNNGTG 1 cut(s) 697
PaqCI CACCTGC 1 cut(s) 668
PciI ACATGT 2 cut(s) 875, 888
PdmI GAANNNNTTC 1 cut(s) 1228
PflMI CCANNNNNTGG 1 cut(s) 114
PfoI TCCNGGA 1 cut(s) 364
Ppu21I YACGTR 1 cut(s) 147
PscI ACATGT 2 cut(s) 875, 888
PsiI TTATAA 1 cut(s) 930
Psp6I CCWGG 3 cut(s) 202, 559, 678
PspGI CCWGG 3 cut(s) 202, 559, 678
PspN4I GGNNCC 6 cut(s) 16, 201, 262, 784, 843, 1061
PspPI GGNCC 3 cut(s) 137, 342, 1059
PsuI RGATCY 2 cut(s) 88, 841
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
RseI CAYNNNNRTG 4 cut(s) 530, 697, 912, 1179
SaqAI TTAA 4 cut(s) 522, 1022, 1107, 1130
Sau3AI GATC 5 cut(s) 39, 88, 497, 841, 951
Sau96I GGNCC 3 cut(s) 137, 342, 1059
ScrFI CCNGG 4 cut(s) 204, 366, 561, 680
SduI GDGCHC 2 cut(s) 888, 896
SfaNI GCATC 1 cut(s) 755
SmiMI CAYNNNNRTG 4 cut(s) 530, 697, 912, 1179
SmlI CTYRAG 1 cut(s) 641
SmoI CTYRAG 1 cut(s) 641
SnaBI TACGTA 1 cut(s) 147
Sse9I AATT 8 cut(s) 541, 555, 742, 970, 1051, 1109, 1188, 1227
SsiI CCGC 5 cut(s) 135, 340, 453, 490, 625
SspMI CTAG 4 cut(s) 215, 587, 776, 1352
StyD4I CCNGG 4 cut(s) 202, 364, 559, 678
StyI CCWWGG 3 cut(s) 493, 769, 1144
TaaI ACNGT 1 cut(s) 823
TaiI ACGT 3 cut(s) 105, 149, 227
TaqI TCGA 1 cut(s) 195
TasI AATT 8 cut(s) 541, 555, 742, 970, 1051, 1109, 1188, 1227
TatI WGTACW 1 cut(s) 387
TauI GCSGC 3 cut(s) 138, 343, 627
Tru1I TTAA 4 cut(s) 522, 1022, 1107, 1130
Tru9I TTAA 4 cut(s) 522, 1022, 1107, 1130
TscAI CASTG 2 cut(s) 914, 1294
TseFI GTSAC 2 cut(s) 19, 803
TseI GCWGC 8 cut(s) 330, 399, 702, 851, 854, 1036, 1171, 1361
Tsp45I GTSAC 2 cut(s) 19, 803
TspDTI ATGAA 4 cut(s) 350, 440, 1197, 1260
TspGWI ACGGA 1 cut(s) 52
TspRI CASTG 2 cut(s) 914, 1294
Van91I CCANNNNNTGG 1 cut(s) 114
XapI RAATTY 4 cut(s) 555, 1109, 1188, 1227
XceI RCATGY 7 cut(s) 194, 256, 385, 879, 892, 917, 1096
XmnI GAANNNNTTC 1 cut(s) 1228
XspI CTAG 4 cut(s) 215, 587, 776, 1352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.