FvH4_5g28720

COBRA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011644
Physical Location & Seq
Forward (+)
19883802 .. 19886858
3057 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g28720.t1

Sequence Viewer

Length: 1410 bp
ATGGGTGGTGGTGGCGGCGGCGGCGGTGACGTGGTGTGTAGTTTTACCTTCACCTTGTCTCTGACGATGATCATCTTCTTCTTGTCATCCATTTCGTTATCTTATGGATACGACCCTTTAGATCCTTATGGCAACGTAACCATCACTTGGGATTTCCTCGCGCAGAGCAACACAGATACTTATGACATAAAAGTATCAATATACAACCTGCAACAATACAGGCATGTCGAATTCCCAGGATGGAGACTACAATGGAAGTGGAACAAATCGGAAGTGATTTGGGACATGCGTGGTGCCGAGGCAGTTGAGCAAGGAGACTGCTCAGCGTTTAAGGGCTCCGGCGCTGGAGATCTTCCTCATTGCTGCCTGAGGCGGCCCGTCATCACTGATCTGCTTCCTGGAACTCCTTACAACATGCAGTACAAGAACTGCTGCAAGGGAGGTGTTTTGTCATCCATGAACCAAGACCCTTCCAAGTATCTCTCCTCCTTTGGGATGAGCATTGGCAACTTTCATGCTAGCCCCCCAGGATTAAACAGTTCCCTTGATAAGCTTAACCTTACAATGCCTACCGATTTTAATCTTGGGATTCCTGGTTACACCTGTGGAGACGCATTTCTTGTCCCCCCAACGAGGTATATTGATGAGAAAGGACAAGGACGCCGCTGGAAACAAACCCTTGAGACATGGAACATCACATGCACCTACTCTCAGTTCCAGGCTTCTCGCGCTCCCAAGTGCTGCGTGTCCTTGTCTGCCTTCTACAACACCACCATTGTTGGTTGCCCTCGTTGCAGTTGCGGATGCCAAAGACTAGGAGGAGCCAAATGTATCGAGTCTGGTGACAAGCCTCCTCCTAGTGTGTTGAAACTTCCAACAGAGCAACAAGCAGCCATACCGCCTCCTCTGGTAACATGTTCGCAGCACATGTGCCCCATCAGAGTTCACTGGCATGTCAAGCAGAGTTATAAGGAGTACTGGAGGGTGAAGATCACAATCACCAATCTCAATTTTCTCAAAAACTATACTGATTGGAACTTGGTTGTTCAGCACCCAAACTTAAAAAGCATCAGGCAGCTTTTCAGCTTCAATTACCATCCCCTCACTACTTATGGAAACATCAATGATACGGGCATGTTTTGGGGCATCAAATTCTATAACGATATGATTCTCACCTCGGGAAACCAAGGGAACGCACAATCAGAAATGTTGCTGCACAAGGATGAAGGAACTTTTACGTTCAGAGAAGGATGGGCTTTCCCAAGAAGAATTTCCTTCAATGGTGATGACTGTGTCATGCCCCCTCCAGATGACTACCCCACACTTCCCAATATTGCAGCAACCCTCAACCCTTACCTGCTGTTAGTCTCCTTCATGTTCCTAGCGGTAGCGGTACCGGCTCTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COBRA

Protein Analysis

470

Amino Acids

52.49

Weight (kDa)

7.79

Isoelectric Point (pI)

41.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COBRA PF04833 61 - 237 2.8e-54 COBRA-like protein
COB_C PF25079 246 - 440 1.1e-50 COBRA family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011644)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09790 AT1G09790
fragaria_vesca FvH4_1g08930 FvH4_5g28720
malus_domestica MD08G1239300.v1.1 MD15G1430900.v1.1
prunus_persica Prupe.1G575900_v2.0.a1 Prupe.1G575900_v2.0.a1
pyrus_communis pycom08g20760
rosa_chinensis RchiOBHm_Chr7g0220881
rosa_laevigata RLG00000002195 RLG00000015287
rosa_multiflora Rmu_ssc0000286.1_g000004
rosa_roxburghii Rroxscaffold_3G00238910
rosa_rugosa Rorug07G0198100
rosa_samantha Rh7AG338300 Rh7BG329100 Rh7CG356400 Rh7DG337200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 969
Acc36I ACCTGC 2 cut(s) 216, 1365
Acc65I GGTACC 1 cut(s) 1393
AccB1I GGYRCC 2 cut(s) 293, 1393
AccB7I CCANNNNNTGG 1 cut(s) 147
AccII CGCG 2 cut(s) 161, 729
AclWI GGATC 1 cut(s) 116
AcsI RAATTY 3 cut(s) 230, 1151, 1269
AcyI GRCGYC 1 cut(s) 661
AfaI GTAC 3 cut(s) 422, 977, 1395
AfiI CCNNNNNNNGG 3 cut(s) 147, 492, 633
AflIII ACRYGT 2 cut(s) 914, 927
AgsI TTSAA 3 cut(s) 868, 1090, 1279
AjiI CACGTC 1 cut(s) 31
AjnI CCWGG 5 cut(s) 235, 397, 526, 592, 717
AjuI GAANNNNNNNTTGG 2 cut(s) 1255, 1287
AluBI AGCT 3 cut(s) 553, 1078, 1086
AluI AGCT 3 cut(s) 553, 1078, 1086
Alw26I GTCTC 6 cut(s) 63, 238, 309, 603, 677, 1372
AlwI GGATC 1 cut(s) 116
Ama87I CYCGRG 1 cut(s) 1177
AoxI GGCC 1 cut(s) 374
ApeKI GCWGC 8 cut(s) 363, 432, 741, 890, 922, 1075, 1213, 1337
ApoI RAATTY 3 cut(s) 230, 1151, 1269
Asp700I GAANNNNTTC 1 cut(s) 1270
Asp718I GGTACC 1 cut(s) 1393
AspLEI GCGC 3 cut(s) 163, 344, 731
AspS9I GGNCC 1 cut(s) 375
AsuHPI GGTGA 7 cut(s) 38, 43, 854, 991, 997, 1165, 1295
AsuNHI GCTAGC 1 cut(s) 518
AvaI CYCGRG 1 cut(s) 1177
AxyI CCTNAGG 1 cut(s) 368
BaeGI GKGCMC 1 cut(s) 935
BanI GGYRCC 2 cut(s) 293, 1393
BanII GRGCYC 1 cut(s) 338
BbvI GCAGC 8 cut(s) 350, 419, 728, 902, 934, 1087, 1200, 1349
BccI CCATC 5 cut(s) 149, 234, 944, 1104, 1245
BciT130I CCWGG 5 cut(s) 237, 399, 528, 594, 719
BciVI GTATCC 1 cut(s) 101
BclI TGATCA 1 cut(s) 69
BcoDI GTCTC 6 cut(s) 63, 238, 309, 603, 677, 1372
BfaI CTAG 4 cut(s) 519, 815, 858, 1382
BfoI RGCGCY 1 cut(s) 345
BfuAI ACCTGC 2 cut(s) 216, 1365
BfuI GTATCC 1 cut(s) 101
BglII AGATCT 1 cut(s) 349
BlpI GCTNAGC 1 cut(s) 322
BmcAI AGTACT 1 cut(s) 977
Bme1390I CCNGG 5 cut(s) 237, 399, 528, 594, 719
BmeT110I CYCGRG 1 cut(s) 1177
BmgBI CACGTC 1 cut(s) 31
BmgT120I GGNCC 1 cut(s) 375
BmiI GGNNCC 4 cut(s) 295, 337, 823, 1395
BmrFI CCNGG 5 cut(s) 237, 399, 528, 594, 719
BmsI GCATC 3 cut(s) 794, 1077, 1155
BmtI GCTAGC 1 cut(s) 522
BpmI CTGGAG 3 cut(s) 366, 1000, 1290
Bpu1102I GCTNAGC 1 cut(s) 322
BpuEI CTTGAG 1 cut(s) 701
BsaBI GATNNNNATC 3 cut(s) 71, 579, 995
BsaHI GRCGYC 1 cut(s) 661
BsaJI CCNNGG 5 cut(s) 235, 297, 526, 1176, 1186
Bsc4I CCNNNNNNNGG 3 cut(s) 147, 492, 633
Bse118I RCCGGY 1 cut(s) 1396
Bse1I ACTGG 2 cut(s) 953, 983
Bse21I CCTNAGG 1 cut(s) 368
Bse3DI GCAATG 1 cut(s) 358
Bse8I GATNNNNATC 3 cut(s) 71, 579, 995
BseBI CCWGG 5 cut(s) 237, 399, 528, 594, 719
BseDI CCNNGG 5 cut(s) 235, 297, 526, 1176, 1186
BseGI GGATG 8 cut(s) 86, 245, 452, 501, 809, 1096, 1228, 1256
BseJI GATNNNNATC 3 cut(s) 71, 579, 995
BseLI CCNNNNNNNGG 3 cut(s) 147, 492, 633
BseMI GCAATG 1 cut(s) 358
BseMII CTCAG 3 cut(s) 336, 359, 725
BseNI ACTGG 2 cut(s) 953, 983
BseRI GAGGAG 4 cut(s) 475, 834, 843, 894
BseSI GKGCMC 1 cut(s) 935
BseXI GCAGC 8 cut(s) 350, 419, 728, 902, 934, 1087, 1200, 1349
BsgI GTGCAG 1 cut(s) 1199
Bsh1236I CGCG 2 cut(s) 161, 729
BshFI GGCC 1 cut(s) 376
BshNI GGYRCC 2 cut(s) 293, 1393
BsiHKCI CYCGRG 1 cut(s) 1177
BsiSI CCGG 2 cut(s) 339, 1397
BslFI GGGAC 2 cut(s) 296, 608
BslI CCNNNNNNNGG 3 cut(s) 147, 492, 633
BsmAI GTCTC 6 cut(s) 63, 238, 309, 603, 677, 1372
BsmBI CGTCTC 1 cut(s) 603
BsmFI GGGAC 2 cut(s) 296, 608
BsnI GGCC 1 cut(s) 376
BsoBI CYCGRG 1 cut(s) 1177
Bsp1286I GDGCHC 2 cut(s) 338, 935
Bsp143I GATC 5 cut(s) 69, 121, 349, 388, 990
Bsp1720I GCTNAGC 1 cut(s) 322
BspANI GGCC 1 cut(s) 376
BspCNI CTCAG 3 cut(s) 335, 360, 724
BspFNI CGCG 2 cut(s) 161, 729
BspLI GGNNCC 4 cut(s) 295, 337, 823, 1395
BspMI ACCTGC 2 cut(s) 216, 1365
BspOI GCTAGC 1 cut(s) 522
BspPI GGATC 1 cut(s) 116
BspT107I GGYRCC 2 cut(s) 293, 1393
BsrDI GCAATG 1 cut(s) 358
BsrFI RCCGGY 1 cut(s) 1396
BsrI ACTGG 2 cut(s) 953, 983
BssAI RCCGGY 1 cut(s) 1396
BssECI CCNNGG 5 cut(s) 235, 297, 526, 1176, 1186
BssMI GATC 5 cut(s) 69, 121, 349, 388, 990
BssNI GRCGYC 1 cut(s) 661
BssT1I CCWWGG 1 cut(s) 1186
Bst2UI CCWGG 5 cut(s) 237, 399, 528, 594, 719
Bst4CI ACNGT 2 cut(s) 539, 1292
BstACI GRCGYC 1 cut(s) 661
BstC8I GCNNGC 1 cut(s) 520
BstDEI CTNAG 3 cut(s) 322, 368, 711
BstF5I GGATG 8 cut(s) 86, 245, 452, 501, 809, 1096, 1228, 1256
BstFNI CGCG 2 cut(s) 161, 729
BstH2I RGCGCY 1 cut(s) 345
BstHHI GCGC 3 cut(s) 163, 344, 731
BstKTI GATC 5 cut(s) 72, 124, 352, 391, 993
BstMAI GTCTC 6 cut(s) 63, 238, 309, 603, 677, 1372
BstMBI GATC 5 cut(s) 69, 121, 349, 388, 990
BstMWI GCNNNNNNNGC 5 cut(s) 21, 728, 792, 958, 1397
BstNI CCWGG 5 cut(s) 237, 399, 528, 594, 719
BstNSI RCATGY 8 cut(s) 227, 289, 418, 702, 918, 931, 956, 1138
BstSCI CCNGG 5 cut(s) 235, 397, 526, 592, 717
BstSLI GKGCMC 1 cut(s) 935
BstUI CGCG 2 cut(s) 161, 729
BstV1I GCAGC 8 cut(s) 350, 419, 728, 902, 934, 1087, 1200, 1349
BstX2I RGATCY 2 cut(s) 121, 349
BstYI RGATCY 2 cut(s) 121, 349
Bsu36I CCTNAGG 1 cut(s) 368
BsuI GTATCC 1 cut(s) 101
BsuRI GGCC 1 cut(s) 376
BtrI CACGTC 1 cut(s) 31
BtsCI GGATG 8 cut(s) 86, 245, 452, 501, 809, 1096, 1228, 1256
BtsIMutI CAGTG 2 cut(s) 384, 946
BveI ACCTGC 2 cut(s) 216, 1365
Cac8I GCNNGC 1 cut(s) 520
CfoI GCGC 3 cut(s) 163, 344, 731
Cfr10I RCCGGY 1 cut(s) 1396
Cfr13I GGNCC 1 cut(s) 375
CseI GACGC 2 cut(s) 620, 669
Csp6I GTAC 3 cut(s) 421, 976, 1394
CspCI CAANNNNNGTGG 4 cut(s) 239, 274, 760, 795
CviQI GTAC 3 cut(s) 421, 976, 1394
DdeI CTNAG 3 cut(s) 322, 368, 711
DpnI GATC 5 cut(s) 71, 123, 351, 390, 992
DpnII GATC 5 cut(s) 69, 121, 349, 388, 990
Eco130I CCWWGG 1 cut(s) 1186
Eco24I GRGCYC 1 cut(s) 338
Eco81I CCTNAGG 1 cut(s) 368
Eco88I CYCGRG 1 cut(s) 1177
EcoRI GAATTC 1 cut(s) 230
EcoRII CCWGG 5 cut(s) 235, 397, 526, 592, 717
EcoT14I CCWWGG 1 cut(s) 1186
EcoT38I GRGCYC 1 cut(s) 338
ErhI CCWWGG 1 cut(s) 1186
Esp3I CGTCTC 1 cut(s) 603
FaqI GGGAC 2 cut(s) 296, 608
FbaI TGATCA 1 cut(s) 69
FokI GGATG 8 cut(s) 73, 252, 439, 508, 816, 1083, 1235, 1263
FriOI GRGCYC 1 cut(s) 338
FspBI CTAG 4 cut(s) 519, 815, 858, 1382
GlaI GCGC 3 cut(s) 162, 343, 730
GsuI CTGGAG 3 cut(s) 366, 1000, 1290
HaeII RGCGCY 1 cut(s) 345
HaeIII GGCC 1 cut(s) 376
HapII CCGG 2 cut(s) 339, 1397
HgaI GACGC 2 cut(s) 620, 669
HhaI GCGC 3 cut(s) 163, 344, 731
Hin1I GRCGYC 1 cut(s) 661
Hin6I GCGC 3 cut(s) 161, 342, 729
HinP1I GCGC 3 cut(s) 161, 342, 729
HindIII AAGCTT 1 cut(s) 551
HinfI GANTC 3 cut(s) 589, 836, 1168
HpaII CCGG 2 cut(s) 339, 1397
HphI GGTGA 7 cut(s) 38, 43, 854, 991, 997, 1165, 1295
Hpy166II GTNNAC 1 cut(s) 946
Hpy188I TCNGA 6 cut(s) 63, 271, 941, 1204, 1244, 1409
Hpy188III TCNNGA 2 cut(s) 1179, 1307
Hpy8I GTNNAC 1 cut(s) 946
HpyAV CCTTC 7 cut(s) 58, 480, 769, 1220, 1241, 1285, 1381
HpyCH4III ACNGT 2 cut(s) 539, 1292
HpyCH4IV ACGT 3 cut(s) 30, 135, 1238
HpyCH4V TGCA 7 cut(s) 211, 418, 435, 702, 795, 1216, 1337
HpyF10VI GCNNNNNNNGC 5 cut(s) 21, 728, 792, 958, 1397
HpyF3I CTNAG 3 cut(s) 322, 368, 711
HpySE526I ACGT 3 cut(s) 30, 135, 1238
Hsp92I GRCGYC 1 cut(s) 661
HspAI GCGC 3 cut(s) 161, 342, 729
KpnI GGTACC 1 cut(s) 1397
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 5 cut(s) 69, 121, 349, 388, 990
LmnI GCTCC 3 cut(s) 341, 736, 821
Lsp1109I GCAGC 8 cut(s) 350, 419, 728, 902, 934, 1087, 1200, 1349
LweI GCATC 3 cut(s) 794, 1077, 1155
MaeI CTAG 4 cut(s) 519, 815, 858, 1382
MaeII ACGT 3 cut(s) 30, 135, 1238
MaeIII GTNAC 5 cut(s) 26, 136, 596, 842, 910
MalI GATC 5 cut(s) 71, 123, 351, 390, 992
MboI GATC 5 cut(s) 69, 121, 349, 388, 990
MboII GAAGA 5 cut(s) 67, 70, 344, 1000, 1278
MflI RGATCY 2 cut(s) 121, 349
MhlI GDGCHC 2 cut(s) 338, 935
MluCI AATT 5 cut(s) 230, 1009, 1090, 1151, 1269
MlyI GAGTC 1 cut(s) 845
MmeI TCCRAC 1 cut(s) 899
MroXI GAANNNNTTC 1 cut(s) 1270
MseI TTAA 5 cut(s) 330, 533, 555, 579, 1061
MslI CAYNNNNRTG 2 cut(s) 951, 1221
MspA1I CMGCKG 1 cut(s) 666
MspI CCGG 2 cut(s) 339, 1397
MspR9I CCNGG 5 cut(s) 237, 399, 528, 594, 719
MvaI CCWGG 5 cut(s) 237, 399, 528, 594, 719
MvnI CGCG 2 cut(s) 161, 729
MwoI GCNNNNNNNGC 5 cut(s) 21, 728, 792, 958, 1397
NdeII GATC 5 cut(s) 69, 121, 349, 388, 990
NheI GCTAGC 1 cut(s) 518
NlaIV GGNNCC 4 cut(s) 295, 337, 823, 1395
NmeAIII GCCGAG 1 cut(s) 322
NmuCI GTSAC 2 cut(s) 26, 842
NspI RCATGY 8 cut(s) 227, 289, 418, 702, 918, 931, 956, 1138
PciI ACATGT 2 cut(s) 914, 927
PdmI GAANNNNTTC 1 cut(s) 1270
PfeI GAWTC 2 cut(s) 589, 1168
PflFI GACNNNGTC 1 cut(s) 1292
PflMI CCANNNNNTGG 1 cut(s) 147
PfoI TCCNGGA 1 cut(s) 397
PleI GAGTC 1 cut(s) 844
PpsI GAGTC 1 cut(s) 844
PscI ACATGT 2 cut(s) 914, 927
PsiI TTATAA 1 cut(s) 969
Psp6I CCWGG 5 cut(s) 235, 397, 526, 592, 717
PspGI CCWGG 5 cut(s) 235, 397, 526, 592, 717
PspN4I GGNNCC 4 cut(s) 295, 337, 823, 1395
PspPI GGNCC 1 cut(s) 375
PsuI RGATCY 2 cut(s) 121, 349
PsyI GACNNNGTC 1 cut(s) 1292
RsaI GTAC 3 cut(s) 422, 977, 1395
RsaNI GTAC 3 cut(s) 421, 976, 1394
RseI CAYNNNNRTG 2 cut(s) 951, 1221
SaqAI TTAA 5 cut(s) 330, 533, 555, 579, 1061
Sau3AI GATC 5 cut(s) 69, 121, 349, 388, 990
Sau96I GGNCC 1 cut(s) 375
ScaI AGTACT 1 cut(s) 977
SchI GAGTC 1 cut(s) 845
ScrFI CCNGG 5 cut(s) 237, 399, 528, 594, 719
SduI GDGCHC 2 cut(s) 338, 935
SfaNI GCATC 3 cut(s) 794, 1077, 1155
SmiMI CAYNNNNRTG 2 cut(s) 951, 1221
SmlI CTYRAG 1 cut(s) 680
SmoI CTYRAG 1 cut(s) 680
Sse9I AATT 5 cut(s) 230, 1009, 1090, 1151, 1269
SspI AATATT 1 cut(s) 1333
SspMI CTAG 4 cut(s) 519, 815, 858, 1382
StyD4I CCNGG 5 cut(s) 235, 397, 526, 592, 717
StyI CCWWGG 1 cut(s) 1186
TaaI ACNGT 2 cut(s) 539, 1292
TaiI ACGT 3 cut(s) 33, 138, 1241
TaqI TCGA 2 cut(s) 228, 834
TasI AATT 5 cut(s) 230, 1009, 1090, 1151, 1269
TatI WGTACW 2 cut(s) 420, 975
TauI GCSGC 5 cut(s) 18, 21, 24, 376, 666
TfiI GAWTC 2 cut(s) 589, 1168
Tru1I TTAA 5 cut(s) 330, 533, 555, 579, 1061
Tru9I TTAA 5 cut(s) 330, 533, 555, 579, 1061
TscAI CASTG 2 cut(s) 391, 953
TseFI GTSAC 2 cut(s) 26, 842
TseI GCWGC 8 cut(s) 363, 432, 741, 890, 922, 1075, 1213, 1337
Tsp45I GTSAC 2 cut(s) 26, 842
TspDTI ATGAA 4 cut(s) 473, 503, 1239, 1363
TspRI CASTG 2 cut(s) 391, 953
Tth111I GACNNNGTC 1 cut(s) 1292
Van91I CCANNNNNTGG 1 cut(s) 147
XapI RAATTY 3 cut(s) 230, 1151, 1269
XceI RCATGY 8 cut(s) 227, 289, 418, 702, 918, 931, 956, 1138
XmnI GAANNNNTTC 1 cut(s) 1270
XspI CTAG 4 cut(s) 519, 815, 858, 1382
ZrmI AGTACT 1 cut(s) 977
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.