RLG00000002195

COBRA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0011644
Physical Location & Seq
Reverse (-)
27005877 .. 27008439
2563 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002195

Sequence Viewer

Length: 1347 bp
ATGGGTGGTGGTGGTGCCGTCACCTTGTCTCTGACGATGATCATCTTCTTGTCTTCCATTTCCGTTGTTTGTGGTGGTGGTGGTAGTGCAGATGGATACGACGCATTAGATCCTTATGGCAACGTAACCATCACTTGGGATTTTCTCTCCCAGAGCGCCCCAGATACGTATGGCATAAAAGTATCGATATACAACCTGCAACAATACAGGCATGTCGAGGTGCCAGGATGGAAACTAGAATGGACGTGGAACAAGTCGGAAGTGATTTGGGACATGCGTGGTGCCGAGGCAGTTGAGCAAGGAGATTGCTCAACGTTTAAGGCTTCCGGTGCCGGACAGCTTCCTCATTGCTGCATGAAGCGGCCCGTCATCATTGACCTGCTTCCCGGAACTCCTTACAACATGCAGTACACCAACTGCTGCAAGGGAGGTGTTTTGTCATCCATGAACCAAGACCCTTCCAAGTATCTCTCCGCCTTTCAGATGAGCATTGGAAACTTTCTTGTTACCCGCCCAGGATCAGACAATCCCTTTGATAAGCTTAACATTACAATGCCTATCAATTTCAATCTCGGAATTCCTGGTTACACCTGTGGAGACGCATTTCTAACATGGAACATCACCTGCACCTACTCTCAGTTCCAGGCTTCTCGCGCACCAAGATGCTGCGTGTCATTGTCTGCCTTCTACAACACCACCATTGTCAATTGTCCTCGTTGCAGTTGCGGATGCCAAGGACTAGGAGGAGCCAAATGTATCAAGTCTGGTGACGAGCCTCCTCCTACTGTGTTGCAACTTCCACAGGAGCAGCAAGCAGCAGCAGTGCCTCCTCTGGTAACATGTTCGCAGCACATGTGCCCTATCAGAGTTCACTGGCATGTCAAGCAGAGCTATAAGGAGTATTGGAGGGTCAAGATCACAATTACCAATCTCAATTTTCTCAAAAACTATTCTGATTGGAACTTGGTCGTTCAGCACCCAAACTTAAAAAGCGTCAGGCAGCTTTTCAGCTTCAATTACCAGCCTCTCATGACCTTTGGAAACATCAATGATACGGGCATGTTTTGGGGCATTAAATTCTATAACGATATGCTATTAACCTCGGGAAACCAAGGGAACGCACAAACAGAAATGTTGCTGCACAAGGATGAAGGAATTTTCACATTCAGAGAAGGATGGACTTTCCCAAGAAGAATTTCCTTCAACGGGGATGAATGTGTAATGCCCCCTCCAGATGACTACCCCACACTTCCCAATGGAGCTTATAGTATTGGAGCAAACCTCAACCCTTCCTTGCTATTAGTCTCCGTCTTGTTCCTAGCAGTAGCAGCACCGGCTCTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COBRA

Protein Analysis

449

Amino Acids

49.53

Weight (kDa)

6.38

Isoelectric Point (pI)

34.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COBRA PF04833 57 - 202 7.5e-46 COBRA-like protein
COB_C PF25079 221 - 415 7.1e-50 COBRA family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011644)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09790 AT1G09790
fragaria_vesca FvH4_1g08930 FvH4_5g28720
malus_domestica MD08G1239300.v1.1 MD15G1430900.v1.1
prunus_persica Prupe.1G575900_v2.0.a1 Prupe.1G575900_v2.0.a1
pyrus_communis pycom08g20760
rosa_chinensis RchiOBHm_Chr7g0220881
rosa_laevigata RLG00000002195 RLG00000015287
rosa_multiflora Rmu_ssc0000286.1_g000004
rosa_roxburghii Rroxscaffold_3G00238910
rosa_rugosa Rorug07G0198100
rosa_samantha Rh7AG338300 Rh7BG329100 Rh7CG356400 Rh7DG337200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 632
Acc36I ACCTGC 3 cut(s) 204, 387, 632
AccB1I GGYRCC 4 cut(s) 14, 220, 281, 329
AccB7I CCANNNNNTGG 1 cut(s) 135
AccII CGCG 1 cut(s) 654
AciI CCGC 4 cut(s) 361, 474, 511, 726
AclI AACGTT 1 cut(s) 314
AclWI GGATC 2 cut(s) 104, 526
AcsI RAATTY 4 cut(s) 576, 1076, 1155, 1194
AfaI GTAC 1 cut(s) 410
AfiI CCNNNNNNNGG 2 cut(s) 135, 1206
AflIII ACRYGT 2 cut(s) 839, 852
AgsI TTSAA 3 cut(s) 568, 1015, 1204
AjiI CACGTC 1 cut(s) 246
AjnI CCWGG 4 cut(s) 223, 514, 580, 642
AjuI GAANNNNNNNTTGG 2 cut(s) 1180, 1212
AluBI AGCT 6 cut(s) 340, 541, 891, 1003, 1011, 1262
AluI AGCT 6 cut(s) 340, 541, 891, 1003, 1011, 1262
Alw26I GTCTC 3 cut(s) 33, 591, 1309
AlwI GGATC 2 cut(s) 104, 526
Ama87I CYCGRG 1 cut(s) 1102
AoxI GGCC 1 cut(s) 362
ApoI RAATTY 4 cut(s) 576, 1076, 1155, 1194
ArsI GACNNNNNNTTYG 2 cut(s) 515, 547
Asp700I GAANNNNTTC 1 cut(s) 1195
AspLEI GCGC 2 cut(s) 158, 656
AspS9I GGNCC 1 cut(s) 363
AsuC2I CCSGG 1 cut(s) 387
AsuHPI GGTGA 3 cut(s) 13, 613, 779
AvaI CYCGRG 1 cut(s) 1102
BaeGI GKGCMC 1 cut(s) 860
BanI GGYRCC 4 cut(s) 14, 220, 281, 329
BbsI GAAGAC 1 cut(s) 45
BccI CCATC 4 cut(s) 86, 137, 222, 1170
BceAI ACGGC 1 cut(s) 2
BciT130I CCWGG 4 cut(s) 225, 516, 582, 644
BciVI GTATCC 1 cut(s) 89
BclI TGATCA 1 cut(s) 39
BcnI CCSGG 1 cut(s) 387
BcoDI GTCTC 3 cut(s) 33, 591, 1309
BfaI CTAG 3 cut(s) 236, 740, 1319
BfoI RGCGCY 1 cut(s) 159
BfuAI ACCTGC 3 cut(s) 204, 387, 632
BfuI GTATCC 1 cut(s) 89
Bme1390I CCNGG 5 cut(s) 225, 387, 516, 582, 644
BmeT110I CYCGRG 1 cut(s) 1102
BmgBI CACGTC 1 cut(s) 246
BmgT120I GGNCC 1 cut(s) 363
BmiI GGNNCC 5 cut(s) 16, 222, 283, 331, 748
BmrFI CCNGG 5 cut(s) 225, 387, 516, 582, 644
BmsI GCATC 2 cut(s) 653, 719
BpiI GAAGAC 1 cut(s) 45
BplI GAGNNNNNCTC 2 cut(s) 1266, 1298
BpmI CTGGAG 1 cut(s) 1215
BpuMI CCSGG 1 cut(s) 387
Bsa29I ATCGAT 1 cut(s) 185
BsaAI YACGTR 1 cut(s) 168
BsaBI GATNNNNATC 1 cut(s) 41
BsaJI CCNNGG 5 cut(s) 285, 514, 733, 1101, 1111
BsaWI WCCGGW 1 cut(s) 326
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 1206
Bse118I RCCGGY 1 cut(s) 1333
Bse1I ACTGG 1 cut(s) 878
Bse3DI GCAATG 1 cut(s) 346
Bse8I GATNNNNATC 1 cut(s) 41
BseBI CCWGG 4 cut(s) 225, 516, 582, 644
BseCI ATCGAT 1 cut(s) 185
BseDI CCNNGG 5 cut(s) 285, 514, 733, 1101, 1111
BseGI GGATG 6 cut(s) 233, 440, 734, 1153, 1181, 1216
BseJI GATNNNNATC 1 cut(s) 41
BseLI CCNNNNNNNGG 2 cut(s) 135, 1206
BseMI GCAATG 1 cut(s) 346
BseMII CTCAG 1 cut(s) 650
BseNI ACTGG 1 cut(s) 878
BseRI GAGGAG 3 cut(s) 759, 768, 819
BseSI GKGCMC 1 cut(s) 860
BsgI GTGCAG 3 cut(s) 108, 610, 1124
Bsh1236I CGCG 1 cut(s) 654
BshFI GGCC 1 cut(s) 364
BshNI GGYRCC 4 cut(s) 14, 220, 281, 329
BshVI ATCGAT 1 cut(s) 185
BsiHKCI CYCGRG 1 cut(s) 1102
BsiSI CCGG 4 cut(s) 327, 333, 387, 1334
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 2 cut(s) 135, 1206
BsmAI GTCTC 3 cut(s) 33, 591, 1309
BsmBI CGTCTC 1 cut(s) 591
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 1 cut(s) 364
BsoBI CYCGRG 1 cut(s) 1102
Bsp1286I GDGCHC 1 cut(s) 860
Bsp143I GATC 4 cut(s) 39, 109, 518, 915
BspACI CCGC 4 cut(s) 361, 474, 511, 726
BspANI GGCC 1 cut(s) 364
BspCNI CTCAG 1 cut(s) 649
BspDI ATCGAT 1 cut(s) 185
BspFNI CGCG 1 cut(s) 654
BspHI TCATGA 1 cut(s) 1029
BspLI GGNNCC 5 cut(s) 16, 222, 283, 331, 748
BspMI ACCTGC 3 cut(s) 204, 387, 632
BspPI GGATC 2 cut(s) 104, 526
BspT107I GGYRCC 4 cut(s) 14, 220, 281, 329
BsrDI GCAATG 1 cut(s) 346
BsrFI RCCGGY 1 cut(s) 1333
BsrI ACTGG 1 cut(s) 878
BssAI RCCGGY 1 cut(s) 1333
BssECI CCNNGG 5 cut(s) 285, 514, 733, 1101, 1111
BssMI GATC 4 cut(s) 39, 109, 518, 915
BssT1I CCWWGG 2 cut(s) 733, 1111
Bst2UI CCWGG 4 cut(s) 225, 516, 582, 644
Bst4CI ACNGT 1 cut(s) 787
BstBAI YACGTR 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 813
BstDEI CTNAG 1 cut(s) 636
BstF5I GGATG 6 cut(s) 233, 440, 734, 1153, 1181, 1216
BstFNI CGCG 1 cut(s) 654
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 2 cut(s) 158, 656
BstKTI GATC 4 cut(s) 42, 112, 521, 918
BstMAI GTCTC 3 cut(s) 33, 591, 1309
BstMBI GATC 4 cut(s) 39, 109, 518, 915
BstMWI GCNNNNNNNGC 5 cut(s) 329, 653, 883, 1328, 1334
BstNI CCWGG 4 cut(s) 225, 516, 582, 644
BstNSI RCATGY 7 cut(s) 215, 277, 406, 843, 856, 881, 1063
BstSCI CCNGG 5 cut(s) 223, 385, 514, 580, 642
BstSLI GKGCMC 1 cut(s) 860
BstSNI TACGTA 1 cut(s) 168
BstUI CGCG 1 cut(s) 654
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
Bsu15I ATCGAT 1 cut(s) 185
BsuI GTATCC 1 cut(s) 89
BsuRI GGCC 1 cut(s) 364
BsuTUI ATCGAT 1 cut(s) 185
BtrI CACGTC 1 cut(s) 246
BtsCI GGATG 6 cut(s) 233, 440, 734, 1153, 1181, 1216
BtsI GCAGTG 1 cut(s) 828
BtsIMutI CAGTG 2 cut(s) 828, 871
BveI ACCTGC 3 cut(s) 204, 387, 632
Cac8I GCNNGC 1 cut(s) 813
CciI TCATGA 1 cut(s) 1029
CfoI GCGC 2 cut(s) 158, 656
Cfr10I RCCGGY 1 cut(s) 1333
Cfr13I GGNCC 1 cut(s) 363
ClaI ATCGAT 1 cut(s) 185
CseI GACGC 3 cut(s) 110, 608, 982
Csp6I GTAC 1 cut(s) 409
CviQI GTAC 1 cut(s) 409
DdeI CTNAG 1 cut(s) 636
DpnI GATC 4 cut(s) 41, 111, 520, 917
DpnII GATC 4 cut(s) 39, 109, 518, 915
EciI GGCGGA 1 cut(s) 463
Eco105I TACGTA 1 cut(s) 168
Eco130I CCWWGG 2 cut(s) 733, 1111
Eco88I CYCGRG 1 cut(s) 1102
EcoRI GAATTC 1 cut(s) 576
EcoRII CCWGG 4 cut(s) 223, 514, 580, 642
EcoT14I CCWWGG 2 cut(s) 733, 1111
ErhI CCWWGG 2 cut(s) 733, 1111
Esp3I CGTCTC 1 cut(s) 591
FaqI GGGAC 1 cut(s) 284
FauI CCCGC 1 cut(s) 518
FbaI TGATCA 1 cut(s) 39
FokI GGATG 6 cut(s) 240, 427, 741, 1160, 1188, 1223
FspBI CTAG 3 cut(s) 236, 740, 1319
GlaI GCGC 2 cut(s) 157, 655
GsuI CTGGAG 1 cut(s) 1215
HaeII RGCGCY 1 cut(s) 159
HaeIII GGCC 1 cut(s) 364
HapII CCGG 4 cut(s) 327, 333, 387, 1334
HgaI GACGC 3 cut(s) 110, 608, 982
HhaI GCGC 2 cut(s) 158, 656
Hin6I GCGC 2 cut(s) 156, 654
HinP1I GCGC 2 cut(s) 156, 654
HindIII AAGCTT 1 cut(s) 539
HpaII CCGG 4 cut(s) 327, 333, 387, 1334
HphI GGTGA 3 cut(s) 13, 613, 779
Hpy166II GTNNAC 2 cut(s) 411, 871
Hpy188I TCNGA 9 cut(s) 33, 259, 483, 523, 575, 866, 955, 1169, 1346
Hpy188III TCNNGA 4 cut(s) 913, 1030, 1104, 1232
Hpy8I GTNNAC 2 cut(s) 411, 871
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 6 cut(s) 468, 694, 1145, 1166, 1210, 1299
HpyCH4III ACNGT 1 cut(s) 787
HpyCH4IV ACGT 4 cut(s) 123, 167, 245, 314
HpyCH4V TGCA 9 cut(s) 89, 199, 354, 406, 423, 627, 720, 793, 1141
HpyF10VI GCNNNNNNNGC 5 cut(s) 329, 653, 883, 1328, 1334
HpyF3I CTNAG 1 cut(s) 636
HpySE526I ACGT 4 cut(s) 123, 167, 245, 314
HspAI GCGC 2 cut(s) 156, 654
Ksp22I TGATCA 1 cut(s) 39
Kzo9I GATC 4 cut(s) 39, 109, 518, 915
LmnI GCTCC 4 cut(s) 746, 805, 1259, 1274
LweI GCATC 2 cut(s) 653, 719
MaeI CTAG 3 cut(s) 236, 740, 1319
MaeII ACGT 4 cut(s) 123, 167, 245, 314
MaeIII GTNAC 6 cut(s) 19, 124, 505, 584, 767, 835
MalI GATC 4 cut(s) 41, 111, 520, 917
MboI GATC 4 cut(s) 39, 109, 518, 915
MboII GAAGA 3 cut(s) 37, 45, 1203
MfeI CAATTG 1 cut(s) 706
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 1 cut(s) 860
MluCI AATT 9 cut(s) 562, 576, 706, 921, 934, 1015, 1076, 1155, 1194
MmeI TCCRAC 1 cut(s) 237
MroXI GAANNNNTTC 1 cut(s) 1195
MseI TTAA 5 cut(s) 318, 543, 986, 1074, 1097
MslI CAYNNNNRTG 4 cut(s) 551, 661, 876, 1146
MspI CCGG 4 cut(s) 327, 333, 387, 1334
MspR9I CCNGG 5 cut(s) 225, 387, 516, 582, 644
MunI CAATTG 1 cut(s) 706
MvaI CCWGG 4 cut(s) 225, 516, 582, 644
MvnI CGCG 1 cut(s) 654
MwoI GCNNNNNNNGC 5 cut(s) 329, 653, 883, 1328, 1334
NciI CCSGG 1 cut(s) 387
NdeII GATC 4 cut(s) 39, 109, 518, 915
NlaIV GGNNCC 5 cut(s) 16, 222, 283, 331, 748
NmeAIII GCCGAG 1 cut(s) 310
NmuCI GTSAC 2 cut(s) 19, 767
NspI RCATGY 7 cut(s) 215, 277, 406, 843, 856, 881, 1063
PagI TCATGA 1 cut(s) 1029
PaqCI CACCTGC 1 cut(s) 632
PciI ACATGT 2 cut(s) 839, 852
PdmI GAANNNNTTC 1 cut(s) 1195
PflMI CCANNNNNTGG 1 cut(s) 135
PfoI TCCNGGA 1 cut(s) 385
Ppu21I YACGTR 1 cut(s) 168
PscI ACATGT 2 cut(s) 839, 852
Psp1406I AACGTT 1 cut(s) 314
Psp6I CCWGG 4 cut(s) 223, 514, 580, 642
PspGI CCWGG 4 cut(s) 223, 514, 580, 642
PspN4I GGNNCC 5 cut(s) 16, 222, 283, 331, 748
PspPI GGNCC 1 cut(s) 363
PsuI RGATCY 1 cut(s) 109
RsaI GTAC 1 cut(s) 410
RsaNI GTAC 1 cut(s) 409
RseI CAYNNNNRTG 4 cut(s) 551, 661, 876, 1146
SaqAI TTAA 5 cut(s) 318, 543, 986, 1074, 1097
Sau3AI GATC 4 cut(s) 39, 109, 518, 915
Sau96I GGNCC 1 cut(s) 363
ScrFI CCNGG 5 cut(s) 225, 387, 516, 582, 644
SduI GDGCHC 1 cut(s) 860
SfaNI GCATC 2 cut(s) 653, 719
SmiMI CAYNNNNRTG 4 cut(s) 551, 661, 876, 1146
SnaBI TACGTA 1 cut(s) 168
Sse9I AATT 9 cut(s) 562, 576, 706, 921, 934, 1015, 1076, 1155, 1194
SsiI CCGC 4 cut(s) 361, 474, 511, 726
SspMI CTAG 3 cut(s) 236, 740, 1319
StyD4I CCNGG 5 cut(s) 223, 385, 514, 580, 642
StyI CCWWGG 2 cut(s) 733, 1111
TaaI ACNGT 1 cut(s) 787
TaiI ACGT 4 cut(s) 126, 170, 248, 317
TaqI TCGA 2 cut(s) 185, 216
TasI AATT 9 cut(s) 562, 576, 706, 921, 934, 1015, 1076, 1155, 1194
TatI WGTACW 1 cut(s) 408
TauI GCSGC 1 cut(s) 364
Tru1I TTAA 5 cut(s) 318, 543, 986, 1074, 1097
Tru9I TTAA 5 cut(s) 318, 543, 986, 1074, 1097
TscAI CASTG 2 cut(s) 828, 878
TseFI GTSAC 2 cut(s) 19, 767
Tsp45I GTSAC 2 cut(s) 19, 767
TspDTI ATGAA 4 cut(s) 371, 461, 1164, 1227
TspGWI ACGGA 2 cut(s) 52, 1297
TspRI CASTG 2 cut(s) 828, 878
Van91I CCANNNNNTGG 1 cut(s) 135
XapI RAATTY 4 cut(s) 576, 1076, 1155, 1194
XceI RCATGY 7 cut(s) 215, 277, 406, 843, 856, 881, 1063
XmnI GAANNNNTTC 1 cut(s) 1195
XspI CTAG 3 cut(s) 236, 740, 1319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.