RLG00000015287

COBRA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0011644
Physical Location & Seq
Forward (+)
64062197 .. 64063579
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015287

Sequence Viewer

Length: 1383 bp
ATGGGTGGTGGTGGTGGTGCCATCACCTTGTCTCTAATGATCATCTTCTTGTCTTCCATTTTCGCATGTTATGGATATGATCCATTAGATCCTTATGGCACCGTAACCATTACATGGGATTTTCTCTCCCAGAGCGCCCCAGATACGTATGACATAAAAGTATCGATATACAACTTGCAACAATACAGGCATGTTGAGGTGCCAGGATGGAAATTGGAATGGACGTGGAACAAGTCAGAAGTGATTTGGGACATGCGTGGTGCTGAGGCAGTTGAGCAAGGAGATTGCTCAGCCTTTAAGGTTTCCAGTGTCGAACAGCTTCCTCATTGCTGCATGAAGCGGCCCGTCATCATTGACCTGCTTCCCGGAACTCCTTACAACATGCAGTACACTAACTGCTGCAAGGGAGGTGTTTTGTCATCCATGAATCAAGACCCTTCCAAGTATCTCTCTGCCTTTCAAATGAGCATTGGAAACTTTCTTGTTAACCGCCAAGGATCAGACAGTCCTTTTGATAAGCTTAACATTACAATGCCTACCAATTTCCATCTCGGAATTCCTGGTTACACCTGTGGAGACGCGTTTCTAGTCCCCCCAACGAGGTTTTCTGATGATAAAGGACGCCGTTGGAAACAAACCCTAGAGACATGGAACATCACCTGCACCTACTCTCAGTTCCAGGCTTCTCGCGCACCAAAGTGTTGCGTGTCCTTGTCTGCCTTCTACAACACCACCATTGTTAATTGCCCTCATTGTAGTTGCGGATGCCAAGGGCTAGGAGGAGCTAAATGTATTAAGTCTGGTGACGAGCCTCCTCCTACTTTGTTGCAACTTCCACAGGAGTTGCAAGCAGTAGCATTGCCTCCTCTGGTAACATGTTCGCAGCACATGTGCCCCATCAGAGTTCACTGGCATGTCAAGCAGAGTTATAAGGAGTATTGGAGGGTCAAGATCACAATCACCAATCTCAATTTTCTGAAAAACTATTCTGATTGGAACTTGGTCGTTCAGCACCCAAACTTAAAAAGCGTCAGGCAGCTTTTCAGCTTCAATTACCAACCCCTTATGACCTATGGAAACATCAATGATACGGGCATGTTTTGGGGCATTAAATTCTATAATGATATGCTATTAACCTCAGGAAACCAAGGGAACGCACAAACAGAAATGTTGCTGCACAAGGATGAAGGAATTTTCACATTAAGAGAAGGATGGACTTTCCCAAGAAGAATTTCCTTCAATGGGGATGAATGTGTAATGCCCCCTTCAGATGACTACCCCACACTTCCTAATGGAGCTTATACTATTAGAGCAAACCTCAACCCTTCCCTGCTATTAGTATTCTTCTTGTTCCTAGCGGTAGCAGCACCAGCTTTTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COBRA

Protein Analysis

461

Amino Acids

51.81

Weight (kDa)

6.73

Isoelectric Point (pI)

41.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COBRA PF04833 50 - 224 1.1e-57 COBRA-like protein
COB_C PF25079 233 - 427 5.1e-49 COBRA family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011644)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09790 AT1G09790
fragaria_vesca FvH4_1g08930 FvH4_5g28720
malus_domestica MD08G1239300.v1.1 MD15G1430900.v1.1
prunus_persica Prupe.1G575900_v2.0.a1 Prupe.1G575900_v2.0.a1
pyrus_communis pycom08g20760
rosa_chinensis RchiOBHm_Chr7g0220881
rosa_laevigata RLG00000002195 RLG00000015287
rosa_multiflora Rmu_ssc0000286.1_g000004
rosa_roxburghii Rroxscaffold_3G00238910
rosa_rugosa Rorug07G0198100
rosa_samantha Rh7AG338300 Rh7BG329100 Rh7CG356400 Rh7DG337200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 930
AarI CACCTGC 1 cut(s) 668
Acc36I ACCTGC 2 cut(s) 366, 668
AccB1I GGYRCC 3 cut(s) 17, 98, 199
AccB7I CCANNNNNTGG 1 cut(s) 114
AccII CGCG 2 cut(s) 581, 690
AciI CCGC 4 cut(s) 340, 490, 762, 1358
AclWI GGATC 3 cut(s) 74, 83, 505
AcsI RAATTY 4 cut(s) 555, 1112, 1191, 1230
AcuI CTGAAG 1 cut(s) 1251
AcyI GRCGYC 1 cut(s) 622
AfaI GTAC 1 cut(s) 389
AfiI CCNNNNNNNGG 3 cut(s) 114, 600, 1242
AflIII ACRYGT 3 cut(s) 579, 875, 888
AgsI TTSAA 3 cut(s) 461, 1051, 1240
AjiI CACGTC 1 cut(s) 225
AjnI CCWGG 3 cut(s) 202, 559, 678
AjuI GAANNNNNNNTTGG 4 cut(s) 589, 621, 1216, 1248
AleI CACNNNNGTG 1 cut(s) 697
AluBI AGCT 7 cut(s) 319, 520, 785, 1039, 1047, 1298, 1373
AluI AGCT 7 cut(s) 319, 520, 785, 1039, 1047, 1298, 1373
Alw26I GTCTC 3 cut(s) 36, 570, 638
AlwI GGATC 3 cut(s) 74, 83, 505
AoxI GGCC 1 cut(s) 341
ApeKI GCWGC 6 cut(s) 330, 399, 883, 1036, 1174, 1364
ApoI RAATTY 4 cut(s) 555, 1112, 1191, 1230
ArsI GACNNNNNNTTYG 2 cut(s) 494, 526
Asp700I GAANNNNTTC 2 cut(s) 318, 1231
AspLEI GCGC 2 cut(s) 137, 692
AspS9I GGNCC 1 cut(s) 342
AsuC2I CCSGG 1 cut(s) 366
AsuHPI GGTGA 4 cut(s) 16, 649, 815, 952
AxyI CCTNAGG 1 cut(s) 1138
BaeGI GKGCMC 1 cut(s) 896
BanI GGYRCC 3 cut(s) 17, 98, 199
BbsI GAAGAC 1 cut(s) 45
BbvCI CCTCAGC 1 cut(s) 264
BbvI GCAGC 6 cut(s) 317, 386, 895, 1048, 1161, 1376
BccI CCATC 5 cut(s) 29, 201, 555, 905, 1206
BceAI ACGGC 1 cut(s) 609
BciT130I CCWGG 3 cut(s) 204, 561, 680
BclI TGATCA 1 cut(s) 39
BcnI CCSGG 1 cut(s) 366
BcoDI GTCTC 3 cut(s) 36, 570, 638
BfaI CTAG 4 cut(s) 587, 641, 776, 1355
BfoI RGCGCY 1 cut(s) 138
BfuAI ACCTGC 2 cut(s) 366, 668
BisI GCNGC 7 cut(s) 331, 341, 400, 884, 1037, 1175, 1365
BlpI GCTNAGC 1 cut(s) 289
BlsI GCNGC 7 cut(s) 332, 342, 401, 885, 1038, 1176, 1366
Bme1390I CCNGG 4 cut(s) 204, 366, 561, 680
BmgBI CACGTC 1 cut(s) 225
BmgT120I GGNCC 1 cut(s) 342
BmiI GGNNCC 3 cut(s) 19, 100, 201
BmrFI CCNGG 4 cut(s) 204, 366, 561, 680
BmsI GCATC 1 cut(s) 755
BpiI GAAGAC 1 cut(s) 45
BplI GAGNNNNNCTC 2 cut(s) 1302, 1334
Bpu10I CCTNAGC 1 cut(s) 264
Bpu1102I GCTNAGC 1 cut(s) 289
BpuMI CCSGG 1 cut(s) 366
Bsa29I ATCGAT 1 cut(s) 164
BsaAI YACGTR 1 cut(s) 147
BsaBI GATNNNNATC 1 cut(s) 956
BsaHI GRCGYC 1 cut(s) 622
BsaJI CCNNGG 3 cut(s) 493, 769, 1147
Bsc4I CCNNNNNNNGG 3 cut(s) 114, 600, 1242
Bse1I ACTGG 2 cut(s) 306, 914
Bse21I CCTNAGG 1 cut(s) 1138
Bse3DI GCAATG 2 cut(s) 325, 857
Bse8I GATNNNNATC 1 cut(s) 956
BseBI CCWGG 3 cut(s) 204, 561, 680
BseCI ATCGAT 1 cut(s) 164
BseDI CCNNGG 3 cut(s) 493, 769, 1147
BseGI GGATG 6 cut(s) 212, 419, 770, 1189, 1217, 1252
BseJI GATNNNNATC 1 cut(s) 956
BseLI CCNNNNNNNGG 3 cut(s) 114, 600, 1242
BseMI GCAATG 2 cut(s) 325, 857
BseMII CTCAG 4 cut(s) 255, 303, 686, 1152
BseNI ACTGG 2 cut(s) 306, 914
BseRI GAGGAG 3 cut(s) 795, 804, 855
BseSI GKGCMC 1 cut(s) 896
BseXI GCAGC 6 cut(s) 317, 386, 895, 1048, 1161, 1376
BsgI GTGCAG 2 cut(s) 646, 1160
Bsh1236I CGCG 2 cut(s) 581, 690
BshFI GGCC 1 cut(s) 343
BshNI GGYRCC 3 cut(s) 17, 98, 199
BshVI ATCGAT 1 cut(s) 164
BsiSI CCGG 1 cut(s) 366
BslFI GGGAC 2 cut(s) 263, 575
BslI CCNNNNNNNGG 3 cut(s) 114, 600, 1242
BsmAI GTCTC 3 cut(s) 36, 570, 638
BsmBI CGTCTC 1 cut(s) 570
BsmFI GGGAC 2 cut(s) 263, 575
BsnI GGCC 1 cut(s) 343
Bsp1286I GDGCHC 1 cut(s) 896
Bsp143I GATC 5 cut(s) 39, 79, 88, 497, 951
Bsp1720I GCTNAGC 1 cut(s) 289
BspACI CCGC 4 cut(s) 340, 490, 762, 1358
BspANI GGCC 1 cut(s) 343
BspCNI CTCAG 4 cut(s) 256, 302, 685, 1151
BspDI ATCGAT 1 cut(s) 164
BspFNI CGCG 2 cut(s) 581, 690
BspLI GGNNCC 3 cut(s) 19, 100, 201
BspMI ACCTGC 2 cut(s) 366, 668
BspPI GGATC 3 cut(s) 74, 83, 505
BspT107I GGYRCC 3 cut(s) 17, 98, 199
BsrDI GCAATG 2 cut(s) 325, 857
BsrI ACTGG 2 cut(s) 306, 914
BssECI CCNNGG 3 cut(s) 493, 769, 1147
BssMI GATC 5 cut(s) 39, 79, 88, 497, 951
BssNI GRCGYC 1 cut(s) 622
BssT1I CCWWGG 3 cut(s) 493, 769, 1147
Bst2UI CCWGG 3 cut(s) 204, 561, 680
Bst4CI ACNGT 2 cut(s) 103, 506
BstACI GRCGYC 1 cut(s) 622
BstBAI YACGTR 1 cut(s) 147
BstC8I GCNNGC 1 cut(s) 849
BstDEI CTNAG 4 cut(s) 264, 289, 672, 1138
BstF5I GGATG 6 cut(s) 212, 419, 770, 1189, 1217, 1252
BstFNI CGCG 2 cut(s) 581, 690
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 2 cut(s) 137, 692
BstKTI GATC 5 cut(s) 42, 82, 91, 500, 954
BstMAI GTCTC 3 cut(s) 36, 570, 638
BstMBI GATC 5 cut(s) 39, 79, 88, 497, 951
BstMWI GCNNNNNNNGC 4 cut(s) 689, 919, 1364, 1370
BstNI CCWGG 3 cut(s) 204, 561, 680
BstNSI RCATGY 8 cut(s) 69, 194, 256, 385, 879, 892, 917, 1099
BstSCI CCNGG 4 cut(s) 202, 364, 559, 678
BstSLI GKGCMC 1 cut(s) 896
BstSNI TACGTA 1 cut(s) 147
BstUI CGCG 2 cut(s) 581, 690
BstV1I GCAGC 6 cut(s) 317, 386, 895, 1048, 1161, 1376
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
Bsu15I ATCGAT 1 cut(s) 164
Bsu36I CCTNAGG 1 cut(s) 1138
BsuRI GGCC 1 cut(s) 343
BsuTUI ATCGAT 1 cut(s) 164
BtrI CACGTC 1 cut(s) 225
BtsCI GGATG 6 cut(s) 212, 419, 770, 1189, 1217, 1252
BtsIMutI CAGTG 2 cut(s) 313, 907
BveI ACCTGC 2 cut(s) 366, 668
Cac8I GCNNGC 1 cut(s) 849
CfoI GCGC 2 cut(s) 137, 692
Cfr13I GGNCC 1 cut(s) 342
ClaI ATCGAT 1 cut(s) 164
CseI GACGC 3 cut(s) 587, 630, 1018
Csp6I GTAC 1 cut(s) 388
CspCI CAANNNNNGTGG 2 cut(s) 825, 860
CviQI GTAC 1 cut(s) 388
DdeI CTNAG 4 cut(s) 264, 289, 672, 1138
DpnI GATC 5 cut(s) 41, 81, 90, 499, 953
DpnII GATC 5 cut(s) 39, 79, 88, 497, 951
Eco105I TACGTA 1 cut(s) 147
Eco130I CCWWGG 3 cut(s) 493, 769, 1147
Eco57I CTGAAG 1 cut(s) 1251
Eco81I CCTNAGG 1 cut(s) 1138
EcoRI GAATTC 1 cut(s) 555
EcoRII CCWGG 3 cut(s) 202, 559, 678
EcoT14I CCWWGG 3 cut(s) 493, 769, 1147
ErhI CCWWGG 3 cut(s) 493, 769, 1147
Esp3I CGTCTC 1 cut(s) 570
FaqI GGGAC 2 cut(s) 263, 575
FbaI TGATCA 1 cut(s) 39
Fnu4HI GCNGC 7 cut(s) 331, 341, 400, 884, 1037, 1175, 1365
FokI GGATG 6 cut(s) 219, 406, 777, 1196, 1224, 1259
Fsp4HI GCNGC 7 cut(s) 331, 341, 400, 884, 1037, 1175, 1365
FspBI CTAG 4 cut(s) 587, 641, 776, 1355
GlaI GCGC 2 cut(s) 136, 691
GluI GCNGC 7 cut(s) 331, 341, 400, 884, 1037, 1175, 1365
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 1 cut(s) 343
HapII CCGG 1 cut(s) 366
HgaI GACGC 3 cut(s) 587, 630, 1018
HhaI GCGC 2 cut(s) 137, 692
Hin1I GRCGYC 1 cut(s) 622
Hin6I GCGC 2 cut(s) 135, 690
HinP1I GCGC 2 cut(s) 135, 690
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HindIII AAGCTT 1 cut(s) 518
HinfI GANTC 1 cut(s) 427
HpaI GTTAAC 1 cut(s) 487
HpaII CCGG 1 cut(s) 366
HphI GGTGA 4 cut(s) 16, 649, 815, 952
Hpy166II GTNNAC 3 cut(s) 390, 487, 907
Hpy188I TCNGA 9 cut(s) 238, 502, 554, 610, 902, 978, 991, 1270, 1382
Hpy188III TCNNGA 3 cut(s) 431, 949, 1140
Hpy8I GTNNAC 3 cut(s) 390, 487, 907
HpyAV CCTTC 7 cut(s) 447, 730, 1181, 1202, 1246, 1275, 1335
HpyCH4III ACNGT 2 cut(s) 103, 506
HpyCH4IV ACGT 2 cut(s) 146, 224
HpyCH4V TGCA 8 cut(s) 178, 333, 385, 402, 663, 829, 847, 1177
HpyF10VI GCNNNNNNNGC 4 cut(s) 689, 919, 1364, 1370
HpyF3I CTNAG 4 cut(s) 264, 289, 672, 1138
HpySE526I ACGT 2 cut(s) 146, 224
Hsp92I GRCGYC 1 cut(s) 622
HspAI GCGC 2 cut(s) 135, 690
Ksp22I TGATCA 1 cut(s) 39
KspAI GTTAAC 1 cut(s) 487
Kzo9I GATC 5 cut(s) 39, 79, 88, 497, 951
LmnI GCTCC 2 cut(s) 782, 1295
Lsp1109I GCAGC 6 cut(s) 317, 386, 895, 1048, 1161, 1376
LweI GCATC 1 cut(s) 755
MaeI CTAG 4 cut(s) 587, 641, 776, 1355
MaeII ACGT 2 cut(s) 146, 224
MaeIII GTNAC 4 cut(s) 103, 563, 803, 871
MalI GATC 5 cut(s) 41, 81, 90, 499, 953
MboI GATC 5 cut(s) 39, 79, 88, 497, 951
MboII GAAGA 4 cut(s) 37, 45, 1239, 1336
MflI RGATCY 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 896
MluCI AATT 9 cut(s) 212, 541, 555, 742, 970, 1051, 1112, 1191, 1230
MluI ACGCGT 1 cut(s) 579
MmeI TCCRAC 1 cut(s) 608
MroXI GAANNNNTTC 2 cut(s) 318, 1231
MseI TTAA 9 cut(s) 297, 486, 522, 741, 795, 1022, 1110, 1133, 1202
MslI CAYNNNNRTG 4 cut(s) 530, 697, 912, 1182
MspI CCGG 1 cut(s) 366
MspR9I CCNGG 4 cut(s) 204, 366, 561, 680
MvaI CCWGG 3 cut(s) 204, 561, 680
MvnI CGCG 2 cut(s) 581, 690
MwoI GCNNNNNNNGC 4 cut(s) 689, 919, 1364, 1370
NciI CCSGG 1 cut(s) 366
NdeII GATC 5 cut(s) 39, 79, 88, 497, 951
NlaIV GGNNCC 3 cut(s) 19, 100, 201
NmuCI GTSAC 1 cut(s) 803
NspI RCATGY 8 cut(s) 69, 194, 256, 385, 879, 892, 917, 1099
OliI CACNNNNGTG 1 cut(s) 697
PaqCI CACCTGC 1 cut(s) 668
PciI ACATGT 2 cut(s) 875, 888
PdmI GAANNNNTTC 2 cut(s) 318, 1231
PfeI GAWTC 1 cut(s) 427
PflMI CCANNNNNTGG 1 cut(s) 114
PfoI TCCNGGA 1 cut(s) 364
PkrI GCNGC 7 cut(s) 332, 342, 401, 885, 1038, 1176, 1366
Ppu21I YACGTR 1 cut(s) 147
PscI ACATGT 2 cut(s) 875, 888
PsiI TTATAA 1 cut(s) 930
Psp6I CCWGG 3 cut(s) 202, 559, 678
PspGI CCWGG 3 cut(s) 202, 559, 678
PspN4I GGNNCC 3 cut(s) 19, 100, 201
PspPI GGNCC 1 cut(s) 342
PsuI RGATCY 1 cut(s) 88
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
RseI CAYNNNNRTG 4 cut(s) 530, 697, 912, 1182
SaqAI TTAA 9 cut(s) 297, 486, 522, 741, 795, 1022, 1110, 1133, 1202
SatI GCNGC 7 cut(s) 331, 341, 400, 884, 1037, 1175, 1365
Sau3AI GATC 5 cut(s) 39, 79, 88, 497, 951
Sau96I GGNCC 1 cut(s) 342
ScrFI CCNGG 4 cut(s) 204, 366, 561, 680
SduI GDGCHC 1 cut(s) 896
SfaNI GCATC 1 cut(s) 755
SmiMI CAYNNNNRTG 4 cut(s) 530, 697, 912, 1182
SnaBI TACGTA 1 cut(s) 147
Sse9I AATT 9 cut(s) 212, 541, 555, 742, 970, 1051, 1112, 1191, 1230
SsiI CCGC 4 cut(s) 340, 490, 762, 1358
SspMI CTAG 4 cut(s) 587, 641, 776, 1355
StyD4I CCNGG 4 cut(s) 202, 364, 559, 678
StyI CCWWGG 3 cut(s) 493, 769, 1147
TaaI ACNGT 2 cut(s) 103, 506
TaiI ACGT 2 cut(s) 149, 227
TaqI TCGA 2 cut(s) 164, 312
TasI AATT 9 cut(s) 212, 541, 555, 742, 970, 1051, 1112, 1191, 1230
TatI WGTACW 1 cut(s) 387
TauI GCSGC 1 cut(s) 343
TfiI GAWTC 1 cut(s) 427
Tru1I TTAA 9 cut(s) 297, 486, 522, 741, 795, 1022, 1110, 1133, 1202
Tru9I TTAA 9 cut(s) 297, 486, 522, 741, 795, 1022, 1110, 1133, 1202
TscAI CASTG 2 cut(s) 313, 914
TseFI GTSAC 1 cut(s) 803
TseI GCWGC 6 cut(s) 330, 399, 883, 1036, 1174, 1364
Tsp45I GTSAC 1 cut(s) 803
TspDTI ATGAA 4 cut(s) 350, 440, 1200, 1263
TspRI CASTG 2 cut(s) 313, 914
Van91I CCANNNNNTGG 1 cut(s) 114
XapI RAATTY 4 cut(s) 555, 1112, 1191, 1230
XceI RCATGY 8 cut(s) 69, 194, 256, 385, 879, 892, 917, 1099
XmnI GAANNNNTTC 2 cut(s) 318, 1231
XspI CTAG 4 cut(s) 587, 641, 776, 1355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.