Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0011644

Physical Location & Seq

Genomic Coordinates Forward (+)

4736614 .. 4740295

Gene Structure 3682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g08930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGGGCGGCGGCGGCGGCGGCGGTGGCGGTGACGTGGTGTGCAACATTTTTACATTTACCTTGTCTCTGATGATGATAATTTTCTTGTCTTCCATTTCTTTATCTTATGCATACGACCCATTAGATCCTTATGGCACTGTAACTATCACTTGGGATTTCCTCACGCAGAGCGACACAGATACGTATGACATAAAAGTATCGATATTCAACCTGCAACAATACAGGCATGTCGAACTCCCAGGATGGAGACTCAAATGGACGTGGAACAAATCAGAAGTGATTTGGGACATGCGTGGTGCTGAGGCAGTTGAACAAGGAGACTGCTCAGCGTTTAAGGGTTCCGGCGCTGGAGATCTTCCTCATTGCTGCCTGAAGCGGCCCGTCATCACTGATCTGCTTCCTGGAACTCCTTACAACATGCAGTACAAGAACTGCTGCAAGGGAGGTGTTTTGTCATCCATGAACCAAGACCCTTCCAAGTATCTCTCCTCCTTTGGGATGAGCATCGGCAACTTCCATGCTAACCCCGCAGGATCAAACAAATCTTTTGATAAGCTTAACCTTACAATGCCTACCGATTTTAGTCTTGGGATTCCTGGTTACACCTGTGGAGACGCATTTCGTGTCCCCCCAACAAGGTATTCTGATGAGAAAGGACAAGGACGCCGTTGGAAACAAACCCTTGAGACATGGAACATCACATGCACCTACTCTCAGTTCCAGGCTTCTCGCGCTCCCAAGTGCTGCGTGTCCTTGTCTGCCTTCTACAACACCACCATTGTTGGTTGCCCTCGTTGCAGTTGCGGATGCCAAAGACTAGGAGGAGCCAAATGTATCGAGTCTGGTGACAAGCCTCCTCCTAGTGTGTTGAAACTTCCAACAGAGCAACAAGCAGCCATATCGCCTCCTCTGGTAACATGTTCACAGCACATGTGCCCCATCAGAGTTCACTGGCATGTCAAGCAGAGTTATAAGGAGTATTGGAGGGTGAAGATCACAATCACCAATCTCAATTTTCTCAAAAACTATTCTGATTGGAACTTAGTTGTTCAGCACCCAAACTTAAAAAGCGTCAGGCAGCTTTTCAGCTTCAATTACCATCCCCTAACTACTTACGGAAACATCAATGACACGGGCATGTTTTGGGGCATCAAATTCTATAACGATATGATTCTAACGTCGGGAAACCAAGGGAACGCACAATCAGAAATGTTGCTGCACAAGGATGAAGGAATTTTTACATTCAGAGAAGGATGGGCTTTCCCAAGAAGAATTTCCTTCAATGGGGATGACTGTGTCATGCCCCCTCCAGATGACTACCCCACACTTCCCAATATTGCAGCAACCCTCAAGCCTTACATGCTATTAGTCTCCTTCATGTTCCTAGCAGTAGCATCACTGGCTCTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

471

Amino Acids

52.55

Weight (kDa)

8.19

Isoelectric Point (pI)

40.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COBRA	PF04833	62 - 238	2e-54	COBRA-like protein
COB_C	PF25079	247 - 441	1.7e-50	COBRA family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09790 AT1G09790
fragaria_vesca	FvH4_1g08930 FvH4_5g28720
malus_domestica	MD08G1239300.v1.1 MD15G1430900.v1.1
prunus_persica	Prupe.1G575900_v2.0.a1 Prupe.1G575900_v2.0.a1
pyrus_communis	pycom08g20760
rosa_chinensis	RchiOBHm_Chr7g0220881
rosa_laevigata	RLG00000002195 RLG00000015287
rosa_multiflora	Rmu_ssc0000286.1_g000004
rosa_roxburghii	Rroxscaffold_3G00238910
rosa_rugosa	Rorug07G0198100
rosa_samantha	Rh7AG338300 Rh7BG329100 Rh7CG356400 Rh7DG337200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	972
Acc36I	ACCTGC	1 cut(s)	219
AccII	CGCG	1 cut(s)	732
AclWI	GGATC	2 cut(s)	119, 541
AcsI	RAATTY	3 cut(s)	1154, 1233, 1272
AcuI	CTGAAG	1 cut(s)	392
AcyI	GRCGYC	1 cut(s)	664
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	3 cut(s)	495, 636, 1284
AflIII	ACRYGT	2 cut(s)	917, 930
AgsI	TTSAA	5 cut(s)	208, 311, 871, 1093, 1282
AjiI	CACGTC	2 cut(s)	34, 261
AjnI	CCWGG	4 cut(s)	238, 400, 595, 720
AjuI	GAANNNNNNNTTGG	4 cut(s)	625, 657, 1258, 1290
AluBI	AGCT	3 cut(s)	556, 1081, 1089
AluI	AGCT	3 cut(s)	556, 1081, 1089
Alw26I	GTCTC	6 cut(s)	69, 241, 312, 606, 680, 1375
AlwI	GGATC	2 cut(s)	119, 541
AoxI	GGCC	1 cut(s)	377
ApeKI	GCWGC	7 cut(s)	366, 435, 744, 893, 1078, 1216, 1340
ApoI	RAATTY	3 cut(s)	1154, 1233, 1272
Asp700I	GAANNNNTTC	1 cut(s)	1273
AspLEI	GCGC	2 cut(s)	347, 734
AspS9I	GGNCC	1 cut(s)	378
AsuHPI	GGTGA	4 cut(s)	41, 857, 994, 1000
BaeGI	GKGCMC	1 cut(s)	938
BbsI	GAAGAC	1 cut(s)	81
BbvCI	CCTCAGC	1 cut(s)	300
BbvI	GCAGC	7 cut(s)	353, 422, 731, 905, 1090, 1203, 1352
BccI	CCATC	4 cut(s)	237, 947, 1107, 1248
BceAI	ACGGC	1 cut(s)	651
BcgI	CGANNNNNNTGC	2 cut(s)	882, 916
BciT130I	CCWGG	4 cut(s)	240, 402, 597, 722
BcoDI	GTCTC	6 cut(s)	69, 241, 312, 606, 680, 1375
BfaI	CTAG	3 cut(s)	818, 861, 1385
BfoI	RGCGCY	1 cut(s)	348
BfuAI	ACCTGC	1 cut(s)	219
BglII	AGATCT	1 cut(s)	352
BlpI	GCTNAGC	1 cut(s)	325
Bme1390I	CCNGG	4 cut(s)	240, 402, 597, 722
BmgBI	CACGTC	2 cut(s)	34, 261
BmgT120I	GGNCC	1 cut(s)	378
BmiI	GGNNCC	2 cut(s)	340, 826
BmrFI	CCNGG	4 cut(s)	240, 402, 597, 722
BmsI	GCATC	4 cut(s)	513, 797, 1158, 1403
BpiI	GAAGAC	1 cut(s)	81
BpmI	CTGGAG	2 cut(s)	369, 1293
Bpu10I	CCTNAGC	1 cut(s)	300
Bpu1102I	GCTNAGC	1 cut(s)	325
BpuEI	CTTGAG	2 cut(s)	704, 1334
Bsa29I	ATCGAT	1 cut(s)	200
BsaAI	YACGTR	1 cut(s)	183
BsaBI	GATNNNNATC	2 cut(s)	503, 998
BsaHI	GRCGYC	1 cut(s)	664
BsaJI	CCNNGG	2 cut(s)	238, 1189
Bsc4I	CCNNNNNNNGG	3 cut(s)	495, 636, 1284
Bse1I	ACTGG	2 cut(s)	956, 1404
Bse3DI	GCAATG	1 cut(s)	361
Bse8I	GATNNNNATC	2 cut(s)	503, 998
BseBI	CCWGG	4 cut(s)	240, 402, 597, 722
BseCI	ATCGAT	1 cut(s)	200
BseDI	CCNNGG	2 cut(s)	238, 1189
BseGI	GGATG	8 cut(s)	248, 455, 504, 812, 1099, 1231, 1259, 1294
BseJI	GATNNNNATC	2 cut(s)	503, 998
BseLI	CCNNNNNNNGG	3 cut(s)	495, 636, 1284
BseMI	GCAATG	1 cut(s)	361
BseMII	CTCAG	3 cut(s)	291, 339, 728
BseNI	ACTGG	2 cut(s)	956, 1404
BseRI	GAGGAG	4 cut(s)	478, 837, 846, 897
BseSI	GKGCMC	1 cut(s)	938
BseXI	GCAGC	7 cut(s)	353, 422, 731, 905, 1090, 1203, 1352
BsgI	GTGCAG	1 cut(s)	1202
Bsh1236I	CGCG	1 cut(s)	732
BshFI	GGCC	1 cut(s)	379
BshVI	ATCGAT	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	342
BslFI	GGGAC	2 cut(s)	299, 611
BslI	CCNNNNNNNGG	3 cut(s)	495, 636, 1284
BsmAI	GTCTC	6 cut(s)	69, 241, 312, 606, 680, 1375
BsmBI	CGTCTC	1 cut(s)	606
BsmFI	GGGAC	2 cut(s)	299, 611
BsnI	GGCC	1 cut(s)	379
Bsp1286I	GDGCHC	1 cut(s)	938
Bsp143I	GATC	5 cut(s)	124, 352, 391, 533, 993
Bsp1720I	GCTNAGC	1 cut(s)	325
BspANI	GGCC	1 cut(s)	379
BspCNI	CTCAG	3 cut(s)	292, 338, 727
BspDI	ATCGAT	1 cut(s)	200
BspFNI	CGCG	1 cut(s)	732
BspLI	GGNNCC	2 cut(s)	340, 826
BspMI	ACCTGC	1 cut(s)	219
BspPI	GGATC	2 cut(s)	119, 541
BsrDI	GCAATG	1 cut(s)	361
BsrI	ACTGG	2 cut(s)	956, 1404
BssECI	CCNNGG	2 cut(s)	238, 1189
BssMI	GATC	5 cut(s)	124, 352, 391, 533, 993
BssNI	GRCGYC	1 cut(s)	664
BssT1I	CCWWGG	1 cut(s)	1189
Bst2UI	CCWGG	4 cut(s)	240, 402, 597, 722
Bst4CI	ACNGT	2 cut(s)	139, 1295
BstACI	GRCGYC	1 cut(s)	664
BstBAI	YACGTR	1 cut(s)	183
BstDEI	CTNAG	4 cut(s)	300, 325, 714, 1042
BstF5I	GGATG	8 cut(s)	248, 455, 504, 812, 1099, 1231, 1259, 1294
BstFNI	CGCG	1 cut(s)	732
BstH2I	RGCGCY	1 cut(s)	348
BstHHI	GCGC	2 cut(s)	347, 734
BstKTI	GATC	5 cut(s)	127, 355, 394, 536, 996
BstMAI	GTCTC	6 cut(s)	69, 241, 312, 606, 680, 1375
BstMBI	GATC	5 cut(s)	124, 352, 391, 533, 993
BstNI	CCWGG	4 cut(s)	240, 402, 597, 722
BstNSI	RCATGY	9 cut(s)	230, 292, 421, 705, 921, 934, 959, 1141, 1363
BstSCI	CCNGG	4 cut(s)	238, 400, 595, 720
BstSLI	GKGCMC	1 cut(s)	938
BstSNI	TACGTA	1 cut(s)	183
BstUI	CGCG	1 cut(s)	732
BstV1I	GCAGC	7 cut(s)	353, 422, 731, 905, 1090, 1203, 1352
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	2 cut(s)	124, 352
BstYI	RGATCY	2 cut(s)	124, 352
Bsu15I	ATCGAT	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	379
BsuTUI	ATCGAT	1 cut(s)	200
BtrI	CACGTC	2 cut(s)	34, 261
BtsCI	GGATG	8 cut(s)	248, 455, 504, 812, 1099, 1231, 1259, 1294
BtsIMutI	CAGTG	4 cut(s)	135, 387, 949, 1397
BveI	ACCTGC	1 cut(s)	219
CfoI	GCGC	2 cut(s)	347, 734
Cfr13I	GGNCC	1 cut(s)	378
ClaI	ATCGAT	1 cut(s)	200
CseI	GACGC	3 cut(s)	623, 672, 1060
Csp6I	GTAC	1 cut(s)	424
CspCI	CAANNNNNGTGG	2 cut(s)	763, 798
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	4 cut(s)	300, 325, 714, 1042
DpnI	GATC	5 cut(s)	126, 354, 393, 535, 995
DpnII	GATC	5 cut(s)	124, 352, 391, 533, 993
Eco105I	TACGTA	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	1189
Eco57I	CTGAAG	1 cut(s)	392
EcoRII	CCWGG	4 cut(s)	238, 400, 595, 720
EcoT14I	CCWWGG	1 cut(s)	1189
EcoT22I	ATGCAT	1 cut(s)	112
ErhI	CCWWGG	1 cut(s)	1189
Esp3I	CGTCTC	1 cut(s)	606
FaqI	GGGAC	2 cut(s)	299, 611
FauI	CCCGC	1 cut(s)	535
FokI	GGATG	8 cut(s)	255, 442, 511, 819, 1086, 1238, 1266, 1301
FspBI	CTAG	3 cut(s)	818, 861, 1385
GlaI	GCGC	2 cut(s)	346, 733
GsuI	CTGGAG	2 cut(s)	369, 1293
HaeII	RGCGCY	1 cut(s)	348
HaeIII	GGCC	1 cut(s)	379
HapII	CCGG	1 cut(s)	342
HgaI	GACGC	3 cut(s)	623, 672, 1060
HhaI	GCGC	2 cut(s)	347, 734
Hin1I	GRCGYC	1 cut(s)	664
Hin6I	GCGC	2 cut(s)	345, 732
HinP1I	GCGC	2 cut(s)	345, 732
HindIII	AAGCTT	1 cut(s)	554
HinfI	GANTC	4 cut(s)	249, 592, 839, 1171
HpaII	CCGG	1 cut(s)	342
HphI	GGTGA	4 cut(s)	41, 857, 994, 1000
Hpy166II	GTNNAC	2 cut(s)	923, 949
Hpy188I	TCNGA	8 cut(s)	69, 274, 646, 944, 1033, 1207, 1247, 1412
Hpy188III	TCNNGA	2 cut(s)	1182, 1310
Hpy8I	GTNNAC	2 cut(s)	923, 949
Hpy99I	CGWCG	1 cut(s)	1183
HpyAV	CCTTC	6 cut(s)	483, 772, 1223, 1244, 1288, 1384
HpyCH4III	ACNGT	2 cut(s)	139, 1295
HpyCH4IV	ACGT	4 cut(s)	33, 182, 260, 1178
HpyCH4V	TGCA	9 cut(s)	42, 110, 214, 421, 438, 705, 798, 1219, 1340
HpyF3I	CTNAG	4 cut(s)	300, 325, 714, 1042
HpySE526I	ACGT	4 cut(s)	33, 182, 260, 1178
Hsp92I	GRCGYC	1 cut(s)	664
HspAI	GCGC	2 cut(s)	345, 732
Kzo9I	GATC	5 cut(s)	124, 352, 391, 533, 993
LmnI	GCTCC	2 cut(s)	739, 824
Lsp1109I	GCAGC	7 cut(s)	353, 422, 731, 905, 1090, 1203, 1352
LweI	GCATC	4 cut(s)	513, 797, 1158, 1403
MaeI	CTAG	3 cut(s)	818, 861, 1385
MaeII	ACGT	4 cut(s)	33, 182, 260, 1178
MaeIII	GTNAC	5 cut(s)	29, 139, 599, 845, 913
MalI	GATC	5 cut(s)	126, 354, 393, 535, 995
MboI	GATC	5 cut(s)	124, 352, 391, 533, 993
MboII	GAAGA	4 cut(s)	81, 347, 1003, 1281
MflI	RGATCY	2 cut(s)	124, 352
MhlI	GDGCHC	1 cut(s)	938
MluCI	AATT	6 cut(s)	78, 1012, 1093, 1154, 1233, 1272
MlyI	GAGTC	2 cut(s)	243, 848
MmeI	TCCRAC	2 cut(s)	650, 902
Mph1103I	ATGCAT	1 cut(s)	112
MroXI	GAANNNNTTC	1 cut(s)	1273
MseI	TTAA	3 cut(s)	333, 558, 1064
MslI	CAYNNNNRTG	3 cut(s)	954, 1136, 1224
MspI	CCGG	1 cut(s)	342
MspR9I	CCNGG	4 cut(s)	240, 402, 597, 722
MvaI	CCWGG	4 cut(s)	240, 402, 597, 722
MvnI	CGCG	1 cut(s)	732
NdeII	GATC	5 cut(s)	124, 352, 391, 533, 993
NlaIV	GGNNCC	2 cut(s)	340, 826
NmuCI	GTSAC	2 cut(s)	29, 845
NsiI	ATGCAT	1 cut(s)	112
NspI	RCATGY	9 cut(s)	230, 292, 421, 705, 921, 934, 959, 1141, 1363
PciI	ACATGT	2 cut(s)	917, 930
PdmI	GAANNNNTTC	1 cut(s)	1273
PfeI	GAWTC	2 cut(s)	592, 1171
PflFI	GACNNNGTC	1 cut(s)	1295
PfoI	TCCNGGA	1 cut(s)	400
PleI	GAGTC	2 cut(s)	243, 847
PpsI	GAGTC	2 cut(s)	243, 847
Ppu21I	YACGTR	1 cut(s)	183
PscI	ACATGT	2 cut(s)	917, 930
PsiI	TTATAA	1 cut(s)	972
Psp6I	CCWGG	4 cut(s)	238, 400, 595, 720
PspGI	CCWGG	4 cut(s)	238, 400, 595, 720
PspN4I	GGNNCC	2 cut(s)	340, 826
PspPI	GGNCC	1 cut(s)	378
PsuI	RGATCY	2 cut(s)	124, 352
PsyI	GACNNNGTC	1 cut(s)	1295
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	3 cut(s)	954, 1136, 1224
SaqAI	TTAA	3 cut(s)	333, 558, 1064
Sau3AI	GATC	5 cut(s)	124, 352, 391, 533, 993
Sau96I	GGNCC	1 cut(s)	378
SchI	GAGTC	2 cut(s)	243, 848
ScrFI	CCNGG	4 cut(s)	240, 402, 597, 722
SduI	GDGCHC	1 cut(s)	938
SfaNI	GCATC	4 cut(s)	513, 797, 1158, 1403
SmiMI	CAYNNNNRTG	3 cut(s)	954, 1136, 1224
SmlI	CTYRAG	2 cut(s)	683, 1349
SmoI	CTYRAG	2 cut(s)	683, 1349
SnaBI	TACGTA	1 cut(s)	183
Sse9I	AATT	6 cut(s)	78, 1012, 1093, 1154, 1233, 1272
SspI	AATATT	1 cut(s)	1336
SspMI	CTAG	3 cut(s)	818, 861, 1385
StyD4I	CCNGG	4 cut(s)	238, 400, 595, 720
StyI	CCWWGG	1 cut(s)	1189
TaaI	ACNGT	2 cut(s)	139, 1295
TaiI	ACGT	4 cut(s)	36, 185, 263, 1181
TaqI	TCGA	3 cut(s)	200, 231, 837
TasI	AATT	6 cut(s)	78, 1012, 1093, 1154, 1233, 1272
TatI	WGTACW	1 cut(s)	423
TauI	GCSGC	6 cut(s)	9, 12, 15, 18, 21, 379
TfiI	GAWTC	2 cut(s)	592, 1171
Tru1I	TTAA	3 cut(s)	333, 558, 1064
Tru9I	TTAA	3 cut(s)	333, 558, 1064
TscAI	CASTG	4 cut(s)	142, 394, 956, 1404
TseFI	GTSAC	2 cut(s)	29, 845
TseI	GCWGC	7 cut(s)	366, 435, 744, 893, 1078, 1216, 1340
Tsp45I	GTSAC	2 cut(s)	29, 845
TspDTI	ATGAA	3 cut(s)	476, 1242, 1366
TspGWI	ACGGA	1 cut(s)	1131
TspRI	CASTG	4 cut(s)	142, 394, 956, 1404
Tth111I	GACNNNGTC	1 cut(s)	1295
XapI	RAATTY	3 cut(s)	1154, 1233, 1272
XceI	RCATGY	9 cut(s)	230, 292, 421, 705, 921, 934, 959, 1141, 1363
XmnI	GAANNNNTTC	1 cut(s)	1273
XspI	CTAG	3 cut(s)	818, 861, 1385
Zsp2I	ATGCAT	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.