Rmu_ssc0000286.1_g000004

COBRA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000286.1
OG0011644
Physical Location & Seq
Reverse (-)
10750 .. 13449
2700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000286.1_g000004.1.cds

Sequence Viewer

Length: 1434 bp
atgatcggacaagactacgatctaggcggagcgaaagagagacaactcagaatgggtggtggtggtgccgtcaccttgtctctgatgatgatcatcttcttgtcttccatttccgtatgttatggatacgacccattagatccttatggcagcgtaaccatcacttgggattttctctcccagagcgccccagatacgtatggcataaaagtatcaatatacaacctgcaacaatacaggcatgtcgaggtgccaggatggaaactagaatggacgtggaacgagtcggaagtgatttgggacatgcgtggtgccgaggcagttgagcaaggagattgctcagcgtttatggcttccggtgccggacagcttcctcattgctgcatgaagcggcccgtcatcattgacctgcttcccggaactccttacaacatgcagtacaccaactgctgcaagggaggtgttttgtcatccatgaaccaagacccttccaagtatctctccgcctttcagatgagcattggaaactttcttgttacccgccaaggatcagacaatccctttgataagcttaacattacaatgcctaccaatttcaatcttggaattcctggttacacctgtggagacgcgtttctagtccccccaacgaggttttctgatgataaaggacgccgctggaaacaaacccttgagacatggaacatcacctgcacctactctcagttccaggcttctcgcgcaccaaagtgctgcgtgtccttgtctgccttctacaacaccaccattgtcaattgccctcgttgcagttgtggatgccaaggactaagaggagccaaatgtatcaagtctggtgacgagcctccttctactgtgttaaaacttccacaggatccacaagcagcagcattgcctcctctggtaacatgttcggagcacatgtgccccatcagagttcactggcatgtcaagcagagttataaggagtattggagggtcaagatcacaatcaccaatctcaattttctcaaaaactattctgattggaacttggtcgttcagcacccaaacttaaaaagcgtcaggcagcttttcagcttcaattatcggcccctcaccacctatggaaacatcaatgatacgggcatgttttggggcattaaattctataacgatatgctattaacctcgggaaaccaagggaacgcacaaacagaaatgttgctgcacaaggacgaaggaattttcacattcagagaaggatggactttcccaagaagaatttctttcaatggggatgaatgtgtaatgccccctccagatgactaccccacacttcccagtggagcttatactattggagcaaacctcaacccttccctactattagtctccttcttgttcctagcagtagcagcaccggctcttttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COBRA

Protein Analysis

477

Amino Acids

53.43

Weight (kDa)

6.98

Isoelectric Point (pI)

35.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011644)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09790 AT1G09790
fragaria_vesca FvH4_1g08930 FvH4_5g28720
malus_domestica MD08G1239300.v1.1 MD15G1430900.v1.1
prunus_persica Prupe.1G575900_v2.0.a1 Prupe.1G575900_v2.0.a1
pyrus_communis pycom08g20760
rosa_chinensis RchiOBHm_Chr7g0220881
rosa_laevigata RLG00000002195 RLG00000015287
rosa_multiflora Rmu_ssc0000286.1_g000004
rosa_roxburghii Rroxscaffold_3G00238910
rosa_rugosa Rorug07G0198100
rosa_samantha Rh7AG338300 Rh7BG329100 Rh7CG356400 Rh7DG337200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 981
AarI CACCTGC 1 cut(s) 719
Acc36I ACCTGC 3 cut(s) 234, 417, 719
AccB1I GGYRCC 4 cut(s) 65, 250, 311, 359
AccB7I CCANNNNNTGG 1 cut(s) 165
AccII CGCG 2 cut(s) 632, 741
AciI CCGC 5 cut(s) 27, 391, 504, 541, 676
AclWI GGATC 4 cut(s) 134, 556, 887, 900
AcsI RAATTY 4 cut(s) 606, 1163, 1242, 1281
AcyI GRCGYC 1 cut(s) 673
AfaI GTAC 1 cut(s) 440
AfiI CCNNNNNNNGG 2 cut(s) 165, 651
AflIII ACRYGT 3 cut(s) 630, 926, 939
AgsI TTSAA 3 cut(s) 598, 1102, 1291
AjiI CACGTC 1 cut(s) 276
AjnI CCWGG 3 cut(s) 253, 610, 729
AjuI GAANNNNNNNTTGG 4 cut(s) 640, 672, 1267, 1299
AleI CACNNNNGTG 1 cut(s) 748
AluBI AGCT 5 cut(s) 370, 571, 1090, 1098, 1349
AluI AGCT 5 cut(s) 370, 571, 1090, 1098, 1349
Alw21I GWGCWC 1 cut(s) 939
Alw26I GTCTC 5 cut(s) 34, 84, 621, 689, 1396
AlwI GGATC 4 cut(s) 134, 556, 887, 900
Ama87I CYCGRG 1 cut(s) 1189
AoxI GGCC 2 cut(s) 392, 1109
ApeKI GCWGC 9 cut(s) 150, 381, 450, 753, 902, 905, 1087, 1225, 1415
ApoI RAATTY 4 cut(s) 606, 1163, 1242, 1281
ArsI GACNNNNNNTTYG 2 cut(s) 545, 577
Asp700I GAANNNNTTC 1 cut(s) 1282
AspLEI GCGC 2 cut(s) 188, 743
AspS9I GGNCC 2 cut(s) 393, 1110
AsuC2I CCSGG 1 cut(s) 417
AsuHPI GGTGA 5 cut(s) 64, 700, 866, 1003, 1108
AvaI CYCGRG 1 cut(s) 1189
BaeGI GKGCMC 1 cut(s) 947
BamHI GGATCC 1 cut(s) 892
BanI GGYRCC 4 cut(s) 65, 250, 311, 359
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 939
BbvI GCAGC 9 cut(s) 162, 368, 437, 740, 914, 917, 1099, 1212, 1427
BccI CCATC 4 cut(s) 167, 252, 956, 1257
BceAI ACGGC 1 cut(s) 53
BciT130I CCWGG 3 cut(s) 255, 612, 731
BciVI GTATCC 1 cut(s) 119
BclI TGATCA 1 cut(s) 90
BcnI CCSGG 1 cut(s) 417
BcoDI GTCTC 5 cut(s) 34, 84, 621, 689, 1396
BfaI CTAG 4 cut(s) 23, 266, 638, 1406
BfoI RGCGCY 1 cut(s) 189
BfuAI ACCTGC 3 cut(s) 234, 417, 719
BfuI GTATCC 1 cut(s) 119
BlpI GCTNAGC 1 cut(s) 340
Bme1390I CCNGG 4 cut(s) 255, 417, 612, 731
BmeT110I CYCGRG 1 cut(s) 1189
BmgBI CACGTC 1 cut(s) 276
BmgT120I GGNCC 2 cut(s) 393, 1110
BmiI GGNNCC 7 cut(s) 67, 252, 313, 361, 835, 894, 1112
BmrFI CCNGG 4 cut(s) 255, 417, 612, 731
BmrI ACTGGG 1 cut(s) 1335
BmsI GCATC 1 cut(s) 806
BmuI ACTGGG 1 cut(s) 1335
BpiI GAAGAC 1 cut(s) 96
BplI GAGNNNNNCTC 2 cut(s) 1353, 1385
BpmI CTGGAG 1 cut(s) 1302
Bpu1102I GCTNAGC 1 cut(s) 340
BpuEI CTTGAG 1 cut(s) 713
BpuMI CCSGG 1 cut(s) 417
BsaAI YACGTR 1 cut(s) 198
BsaBI GATNNNNATC 3 cut(s) 89, 92, 1007
BsaHI GRCGYC 1 cut(s) 673
BsaJI CCNNGG 5 cut(s) 315, 544, 820, 1188, 1198
BsaWI WCCGGW 1 cut(s) 356
BsaXI ACNNNNNCTCC 2 cut(s) 926, 956
Bsc4I CCNNNNNNNGG 2 cut(s) 165, 651
Bse118I RCCGGY 1 cut(s) 1420
Bse1I ACTGG 2 cut(s) 965, 1341
Bse3DI GCAATG 2 cut(s) 376, 908
Bse8I GATNNNNATC 3 cut(s) 89, 92, 1007
BseBI CCWGG 3 cut(s) 255, 612, 731
BseDI CCNNGG 5 cut(s) 315, 544, 820, 1188, 1198
BseGI GGATG 5 cut(s) 263, 470, 821, 1268, 1303
BseJI GATNNNNATC 3 cut(s) 89, 92, 1007
BseLI CCNNNNNNNGG 2 cut(s) 165, 651
BseMI GCAATG 2 cut(s) 376, 908
BseMII CTCAG 3 cut(s) 61, 354, 737
BseNI ACTGG 2 cut(s) 965, 1341
BseRI GAGGAG 2 cut(s) 846, 906
BseSI GKGCMC 1 cut(s) 947
BseXI GCAGC 9 cut(s) 162, 368, 437, 740, 914, 917, 1099, 1212, 1427
BsgI GTGCAG 2 cut(s) 697, 1211
Bsh1236I CGCG 2 cut(s) 632, 741
BshFI GGCC 2 cut(s) 394, 1111
BshNI GGYRCC 4 cut(s) 65, 250, 311, 359
BsiHKAI GWGCWC 1 cut(s) 939
BsiHKCI CYCGRG 1 cut(s) 1189
BsiSI CCGG 4 cut(s) 357, 363, 417, 1421
BslFI GGGAC 2 cut(s) 314, 626
BslI CCNNNNNNNGG 2 cut(s) 165, 651
BsmAI GTCTC 5 cut(s) 34, 84, 621, 689, 1396
BsmBI CGTCTC 1 cut(s) 621
BsmFI GGGAC 2 cut(s) 314, 626
BsnI GGCC 2 cut(s) 394, 1111
BsoBI CYCGRG 1 cut(s) 1189
Bsp1286I GDGCHC 2 cut(s) 939, 947
Bsp143I GATC 7 cut(s) 3, 19, 90, 139, 548, 892, 1002
Bsp1720I GCTNAGC 1 cut(s) 340
BspACI CCGC 5 cut(s) 27, 391, 504, 541, 676
BspANI GGCC 2 cut(s) 394, 1111
BspCNI CTCAG 3 cut(s) 60, 353, 736
BspFNI CGCG 2 cut(s) 632, 741
BspLI GGNNCC 7 cut(s) 67, 252, 313, 361, 835, 894, 1112
BspMI ACCTGC 3 cut(s) 234, 417, 719
BspPI GGATC 4 cut(s) 134, 556, 887, 900
BspT107I GGYRCC 4 cut(s) 65, 250, 311, 359
BsrDI GCAATG 2 cut(s) 376, 908
BsrFI RCCGGY 1 cut(s) 1420
BsrI ACTGG 2 cut(s) 965, 1341
BssAI RCCGGY 1 cut(s) 1420
BssECI CCNNGG 5 cut(s) 315, 544, 820, 1188, 1198
BssMI GATC 7 cut(s) 3, 19, 90, 139, 548, 892, 1002
BssNI GRCGYC 1 cut(s) 673
BssT1I CCWWGG 3 cut(s) 544, 820, 1198
Bst2UI CCWGG 3 cut(s) 255, 612, 731
Bst4CI ACNGT 1 cut(s) 874
BstACI GRCGYC 1 cut(s) 673
BstBAI YACGTR 1 cut(s) 198
BstDEI CTNAG 4 cut(s) 47, 340, 723, 827
BstF5I GGATG 5 cut(s) 263, 470, 821, 1268, 1303
BstFNI CGCG 2 cut(s) 632, 741
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 2 cut(s) 188, 743
BstKTI GATC 7 cut(s) 6, 22, 93, 142, 551, 895, 1005
BstMAI GTCTC 5 cut(s) 34, 84, 621, 689, 1396
BstMBI GATC 7 cut(s) 3, 19, 90, 139, 548, 892, 1002
BstMWI GCNNNNNNNGC 7 cut(s) 350, 359, 740, 804, 970, 1415, 1421
BstNI CCWGG 3 cut(s) 255, 612, 731
BstNSI RCATGY 7 cut(s) 245, 307, 436, 930, 943, 968, 1150
BstSCI CCNGG 4 cut(s) 253, 415, 610, 729
BstSLI GKGCMC 1 cut(s) 947
BstSNI TACGTA 1 cut(s) 198
BstUI CGCG 2 cut(s) 632, 741
BstV1I GCAGC 9 cut(s) 162, 368, 437, 740, 914, 917, 1099, 1212, 1427
BstV2I GAAGAC 1 cut(s) 96
BstX2I RGATCY 2 cut(s) 139, 892
BstYI RGATCY 2 cut(s) 139, 892
BsuI GTATCC 1 cut(s) 119
BsuRI GGCC 2 cut(s) 394, 1111
BtrI CACGTC 1 cut(s) 276
BtsCI GGATG 5 cut(s) 263, 470, 821, 1268, 1303
BtsIMutI CAGTG 2 cut(s) 958, 1348
BveI ACCTGC 3 cut(s) 234, 417, 719
CfoI GCGC 2 cut(s) 188, 743
Cfr10I RCCGGY 1 cut(s) 1420
Cfr13I GGNCC 2 cut(s) 393, 1110
CseI GACGC 3 cut(s) 638, 681, 1069
Csp6I GTAC 1 cut(s) 439
CviQI GTAC 1 cut(s) 439
DdeI CTNAG 4 cut(s) 47, 340, 723, 827
DpnI GATC 7 cut(s) 5, 21, 92, 141, 550, 894, 1004
DpnII GATC 7 cut(s) 3, 19, 90, 139, 548, 892, 1002
EciI GGCGGA 2 cut(s) 42, 493
Eco105I TACGTA 1 cut(s) 198
Eco130I CCWWGG 3 cut(s) 544, 820, 1198
Eco88I CYCGRG 1 cut(s) 1189
EcoRI GAATTC 1 cut(s) 606
EcoRII CCWGG 3 cut(s) 253, 610, 729
EcoT14I CCWWGG 3 cut(s) 544, 820, 1198
ErhI CCWWGG 3 cut(s) 544, 820, 1198
Esp3I CGTCTC 1 cut(s) 621
FalI AAGNNNNNCTT 2 cut(s) 1270, 1302
FaqI GGGAC 2 cut(s) 314, 626
FauI CCCGC 1 cut(s) 548
FbaI TGATCA 1 cut(s) 90
FokI GGATG 5 cut(s) 270, 457, 828, 1275, 1310
FspBI CTAG 4 cut(s) 23, 266, 638, 1406
GlaI GCGC 2 cut(s) 187, 742
GsuI CTGGAG 1 cut(s) 1302
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 2 cut(s) 394, 1111
HapII CCGG 4 cut(s) 357, 363, 417, 1421
HgaI GACGC 3 cut(s) 638, 681, 1069
HhaI GCGC 2 cut(s) 188, 743
Hin1I GRCGYC 1 cut(s) 673
Hin6I GCGC 2 cut(s) 186, 741
HinP1I GCGC 2 cut(s) 186, 741
HindIII AAGCTT 1 cut(s) 569
HinfI GANTC 1 cut(s) 284
HpaII CCGG 4 cut(s) 357, 363, 417, 1421
HphI GGTGA 5 cut(s) 64, 700, 866, 1003, 1108
Hpy166II GTNNAC 2 cut(s) 441, 958
Hpy188III TCNNGA 3 cut(s) 1000, 1191, 1319
Hpy8I GTNNAC 2 cut(s) 441, 958
HpyAV CCTTC 7 cut(s) 498, 781, 876, 1232, 1253, 1386, 1405
HpyCH4III ACNGT 1 cut(s) 874
HpyCH4IV ACGT 2 cut(s) 197, 275
HpyCH4V TGCA 7 cut(s) 229, 384, 436, 453, 714, 807, 1228
HpyF10VI GCNNNNNNNGC 7 cut(s) 350, 359, 740, 804, 970, 1415, 1421
HpyF3I CTNAG 4 cut(s) 47, 340, 723, 827
HpySE526I ACGT 2 cut(s) 197, 275
Hsp92I GRCGYC 1 cut(s) 673
HspAI GCGC 2 cut(s) 186, 741
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 7 cut(s) 3, 19, 90, 139, 548, 892, 1002
LmnI GCTCC 5 cut(s) 29, 833, 934, 1346, 1361
Lsp1109I GCAGC 9 cut(s) 162, 368, 437, 740, 914, 917, 1099, 1212, 1427
LweI GCATC 1 cut(s) 806
MaeI CTAG 4 cut(s) 23, 266, 638, 1406
MaeII ACGT 2 cut(s) 197, 275
MaeIII GTNAC 6 cut(s) 70, 154, 535, 614, 854, 922
MalI GATC 7 cut(s) 5, 21, 92, 141, 550, 894, 1004
MboI GATC 7 cut(s) 3, 19, 90, 139, 548, 892, 1002
MboII GAAGA 3 cut(s) 88, 96, 1290
MfeI CAATTG 1 cut(s) 793
MflI RGATCY 2 cut(s) 139, 892
MhlI GDGCHC 2 cut(s) 939, 947
MluCI AATT 8 cut(s) 592, 606, 793, 1021, 1102, 1163, 1242, 1281
MluI ACGCGT 1 cut(s) 630
MlyI GAGTC 1 cut(s) 293
MmeI TCCRAC 1 cut(s) 267
MroXI GAANNNNTTC 1 cut(s) 1282
MseI TTAA 5 cut(s) 573, 878, 1073, 1161, 1184
MslI CAYNNNNRTG 3 cut(s) 581, 748, 963
MspA1I CMGCKG 1 cut(s) 678
MspI CCGG 4 cut(s) 357, 363, 417, 1421
MspR9I CCNGG 4 cut(s) 255, 417, 612, 731
MunI CAATTG 1 cut(s) 793
MvaI CCWGG 3 cut(s) 255, 612, 731
MvnI CGCG 2 cut(s) 632, 741
MwoI GCNNNNNNNGC 7 cut(s) 350, 359, 740, 804, 970, 1415, 1421
NciI CCSGG 1 cut(s) 417
NdeII GATC 7 cut(s) 3, 19, 90, 139, 548, 892, 1002
NlaIV GGNNCC 7 cut(s) 67, 252, 313, 361, 835, 894, 1112
NmeAIII GCCGAG 1 cut(s) 340
NmuCI GTSAC 2 cut(s) 70, 854
NspI RCATGY 7 cut(s) 245, 307, 436, 930, 943, 968, 1150
OliI CACNNNNGTG 1 cut(s) 748
PaqCI CACCTGC 1 cut(s) 719
PciI ACATGT 2 cut(s) 926, 939
PdmI GAANNNNTTC 1 cut(s) 1282
PflMI CCANNNNNTGG 1 cut(s) 165
PfoI TCCNGGA 1 cut(s) 415
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
Ppu21I YACGTR 1 cut(s) 198
PscI ACATGT 2 cut(s) 926, 939
PsiI TTATAA 1 cut(s) 981
Psp6I CCWGG 3 cut(s) 253, 610, 729
PspGI CCWGG 3 cut(s) 253, 610, 729
PspN4I GGNNCC 7 cut(s) 67, 252, 313, 361, 835, 894, 1112
PspPI GGNCC 2 cut(s) 393, 1110
PsuI RGATCY 2 cut(s) 139, 892
RsaI GTAC 1 cut(s) 440
RsaNI GTAC 1 cut(s) 439
RseI CAYNNNNRTG 3 cut(s) 581, 748, 963
SaqAI TTAA 5 cut(s) 573, 878, 1073, 1161, 1184
Sau3AI GATC 7 cut(s) 3, 19, 90, 139, 548, 892, 1002
Sau96I GGNCC 2 cut(s) 393, 1110
SchI GAGTC 1 cut(s) 293
ScrFI CCNGG 4 cut(s) 255, 417, 612, 731
SduI GDGCHC 2 cut(s) 939, 947
SfaNI GCATC 1 cut(s) 806
SmiMI CAYNNNNRTG 3 cut(s) 581, 748, 963
SmlI CTYRAG 1 cut(s) 692
SmoI CTYRAG 1 cut(s) 692
SnaBI TACGTA 1 cut(s) 198
Sse9I AATT 8 cut(s) 592, 606, 793, 1021, 1102, 1163, 1242, 1281
SsiI CCGC 5 cut(s) 27, 391, 504, 541, 676
SspMI CTAG 4 cut(s) 23, 266, 638, 1406
StyD4I CCNGG 4 cut(s) 253, 415, 610, 729
StyI CCWWGG 3 cut(s) 544, 820, 1198
TaaI ACNGT 1 cut(s) 874
TaiI ACGT 2 cut(s) 200, 278
TaqI TCGA 1 cut(s) 246
TasI AATT 8 cut(s) 592, 606, 793, 1021, 1102, 1163, 1242, 1281
TatI WGTACW 1 cut(s) 438
TauI GCSGC 2 cut(s) 394, 678
Tru1I TTAA 5 cut(s) 573, 878, 1073, 1161, 1184
Tru9I TTAA 5 cut(s) 573, 878, 1073, 1161, 1184
TscAI CASTG 2 cut(s) 965, 1348
TseFI GTSAC 2 cut(s) 70, 854
TseI GCWGC 9 cut(s) 150, 381, 450, 753, 902, 905, 1087, 1225, 1415
Tsp45I GTSAC 2 cut(s) 70, 854
TspDTI ATGAA 3 cut(s) 401, 491, 1314
TspGWI ACGGA 1 cut(s) 103
TspRI CASTG 2 cut(s) 965, 1348
Van91I CCANNNNNTGG 1 cut(s) 165
XapI RAATTY 4 cut(s) 606, 1163, 1242, 1281
XceI RCATGY 7 cut(s) 245, 307, 436, 930, 943, 968, 1150
XmnI GAANNNNTTC 1 cut(s) 1282
XspI CTAG 4 cut(s) 23, 266, 638, 1406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.