Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002559

Physical Location & Seq

Genomic Coordinates Reverse (-)

3195719 .. 3200403

Gene Structure 4685 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G09840.11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGCATCCTCTGGACTGGGAAATGGAGTAGGCACTTCGAGATCTGCCAAAGGTTTAAAGAGCTCTTCTAGTTCTGTCGATTGGTTGACCAGAGATTTGGCTGAGACGAGGATAAGGGACAAAGTAGAGACCGATGATGAGAGAGATAGTGAACCAGATATTATTGATGGGGCTGGTGCTGAGCCTGGTCATGTGATTAGAACCACACTCCGTGGTCGAAATGGTCAATCAAGACAGACAGTCAGTTACATATCAGAACATGTTGTTGGTACTGGTTCCTTTGGCATGGTTTTCCAAGCTAAATGTAGGGAAACTGGGGAGGTTGTTGCCATCAAGAAGGTTCTACAAGACAAACGCTACAAGAACAGGGAGCTACAAATAATGCAGATGCTAGACCATCCCAATGCCGTTGCTTTAAAGCATAGCTTTTTCTCAAGAACAGACAACGAAGAGGTTTATTTGAATCTTGTCCTTGAATTTGTGCCTGAGACCGTCAATCGTGTTGCAAGAAGTTATAGTAGGACAAACCAGCTGATGCCATTGATATATGTTAAACTCTACACCTATCAGATTTGCAGGGCGCTTGCTTACATCCATAATTCCTTTGGTCTTTGTCACCGTGATATCAAGCCTCAAAACCTGCTGGTGAACCCACACACGCATCAGCTAAAAATATGTGATTTCGGGAGTGCAAAAGTGTTGGTAAAAGGAGAACCCAATGTTTCTTACATCTGTTCTAGATACTATCGTGCTCCAGAACTCATTTTTGGTGCCAGTGAATACACAACTGCAATTGATATATGGTCCACTGGTTGTGTGATGGCCGAACTGCTTCTTGGACAGCCTCTGTTTCCTGGTGAGAGCGGAGTTGATCAGCTTGTTGAAATCATTAAGGTTTTAGGTACACCAACAAGGGAAGAAATCAAGTGCATGAATCCAAACTATACAGAATTTAAGTTTCCGCAGATAAAACCTCATCCATGGCACAAGGTGTTCCAAAAACGTTTGCCACCAGAAGCAGTTGATCTTCTTTGTAGGTTCTTCCAATATTCCCCCAATTTGAGATGTACAGCTTTGGAAGCTTGTATCCATCCGTTATTTGATGAGCTAAGGGACCCAAACACTCGTCTTCCCAATGGCCGACCACTTCCTCCACTTTTCAACTTTAAACCGCAAGAGCTATCTGGCATACCTCCTGAAATCGTGAACAGGCTTGTCCCAGAGCATGCCCGTAAGCAGAACCTCTTCATGGCTTTGCATTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

421

Amino Acids

47.67

Weight (kDa)

8.58

Isoelectric Point (pI)

35.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 240	6.1e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	1 - 158	3.9e-15	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G57870 AT1G57870 AT1G57870 AT1G57870
fragaria_vesca	FvH4_5g28620 FvH4_5g28620 FvH4_5g28620 FvH4_5g28620 FvH4_5g28620 FvH4_5g28620
malus_domestica	MD08G1243600.v1.1 MD15G1437800.v1.1
prunus_persica	Prupe.1G580900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0220561
rosa_laevigata	RLG00000002217
rosa_multiflora	Rmu_sc0025016.1_g000001 Rmu_ssc0000189.1_g000031
rosa_roxburghii	Rroxscaffold_3G00239300
rosa_rugosa	Rorug07G0194800 Rorug07G0194800 Rorug07G0194900 Rorug07G0195000
rosa_samantha	Rh2AG332300 Rh7AG336000 Rh7BG327100 Rh7CG353700 Rh7DG332300
rosa_wichuraiana	Rw0G017340 Rw7G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	648
AccB1I	GGYRCC	1 cut(s)	770
AccBSI	CCGCTC	1 cut(s)	864
AciI	CCGC	3 cut(s)	864, 962, 1172
AclI	AACGTT	1 cut(s)	1003
AcoI	YGGCCR	2 cut(s)	822, 1138
AcsI	RAATTY	2 cut(s)	476, 950
AdeI	CACNNNGTG	2 cut(s)	212, 991
AfaI	GTAC	3 cut(s)	271, 904, 1069
AfiI	CCNNNNNNNGG	1 cut(s)	1249
AflIII	ACRYGT	1 cut(s)	259
AgsI	TTSAA	4 cut(s)	463, 476, 884, 1162
AhdI	GACNNNNNGTC	1 cut(s)	239
AjnI	CCWGG	2 cut(s)	184, 853
AjuI	GAANNNNNNNTTGG	6 cut(s)	249, 281, 750, 782, 819, 851
Alw21I	GWGCWC	2 cut(s)	65, 754
Alw26I	GTCTC	3 cut(s)	98, 122, 482
AlwNI	CAGNNNCTG	1 cut(s)	847
AoxI	GGCC	2 cut(s)	822, 1138
ApoI	RAATTY	2 cut(s)	476, 950
ArsI	GACNNNNNNTTYG	2 cut(s)	79, 111
Asp700I	GAANNNNTTC	2 cut(s)	831, 1244
AspLEI	GCGC	1 cut(s)	583
AspS9I	GGNCC	2 cut(s)	804, 1114
AsuHPI	GGTGA	3 cut(s)	608, 658, 869
AvaII	GGWCC	2 cut(s)	804, 1114
BaeI	ACNNNNGTAYC	2 cut(s)	733, 766
BanI	GGYRCC	1 cut(s)	770
BanII	GRGCYC	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	1121
Bbv12I	GWGCWC	2 cut(s)	65, 754
BccI	CCATC	5 cut(s)	161, 338, 405, 814, 1098
BceAI	ACGGC	1 cut(s)	392
BciT130I	CCWGG	2 cut(s)	186, 855
BciVI	GTATCC	1 cut(s)	1097
BclI	TGATCA	1 cut(s)	871
BcoDI	GTCTC	3 cut(s)	98, 122, 482
BfaI	CTAG	3 cut(s)	69, 392, 738
BfoI	RGCGCY	1 cut(s)	584
BfuAI	ACCTGC	1 cut(s)	648
BfuI	GTATCC	1 cut(s)	1097
BglII	AGATCT	1 cut(s)	41
BlpI	GCTNAGC	1 cut(s)	180
Bme1390I	CCNGG	2 cut(s)	186, 855
Bme18I	GGWCC	2 cut(s)	804, 1114
BmeRI	GACNNNNNGTC	1 cut(s)	239
BmgT120I	GGNCC	2 cut(s)	804, 1114
BmiI	GGNNCC	4 cut(s)	277, 772, 1115, 1116
BmrFI	CCNGG	2 cut(s)	186, 855
BmrI	ACTGGG	2 cut(s)	26, 324
BmsI	GCATC	4 cut(s)	14, 378, 525, 670
BmuI	ACTGGG	2 cut(s)	26, 324
BpiI	GAAGAC	1 cut(s)	1121
BpmI	CTGGAG	1 cut(s)	738
Bpu10I	CCTNAGC	1 cut(s)	1109
Bpu1102I	GCTNAGC	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	418
BsaI	GGTCTC	2 cut(s)	122, 482
BsaJI	CCNNGG	2 cut(s)	211, 980
Bsc4I	CCNNNNNNNGG	1 cut(s)	1249
Bse1I	ACTGG	5 cut(s)	21, 277, 319, 774, 814
BseBI	CCWGG	2 cut(s)	186, 855
BseDI	CCNNGG	2 cut(s)	211, 980
BseGI	GGATG	5 cut(s)	5, 397, 591, 976, 1090
BseLI	CCNNNNNNNGG	1 cut(s)	1249
BseMII	CTCAG	3 cut(s)	93, 171, 477
BseNI	ACTGG	5 cut(s)	21, 277, 319, 774, 814
BshFI	GGCC	2 cut(s)	824, 1140
BshNI	GGYRCC	1 cut(s)	770
BsiHKAI	GWGCWC	2 cut(s)	65, 754
BslFI	GGGAC	3 cut(s)	131, 1127, 1202
BslI	CCNNNNNNNGG	1 cut(s)	1249
BsmAI	GTCTC	3 cut(s)	98, 122, 482
BsmBI	CGTCTC	1 cut(s)	98
BsmFI	GGGAC	3 cut(s)	131, 1127, 1202
BsmI	GAATGC	1 cut(s)	1258
BsnI	GGCC	2 cut(s)	824, 1140
Bso31I	GGTCTC	2 cut(s)	122, 482
Bsp1286I	GDGCHC	2 cut(s)	65, 754
Bsp1407I	TGTACA	1 cut(s)	1067
Bsp143I	GATC	3 cut(s)	41, 871, 1024
Bsp1720I	GCTNAGC	1 cut(s)	180
Bsp19I	CCATGG	1 cut(s)	980
BspACI	CCGC	3 cut(s)	864, 962, 1172
BspANI	GGCC	2 cut(s)	824, 1140
BspCNI	CTCAG	3 cut(s)	94, 172, 478
BspLI	GGNNCC	4 cut(s)	277, 772, 1115, 1116
BspMI	ACCTGC	1 cut(s)	648
BspQI	GCTCTTC	1 cut(s)	70
BspT107I	GGYRCC	1 cut(s)	770
BspTNI	GGTCTC	2 cut(s)	122, 482
BsrBI	CCGCTC	1 cut(s)	864
BsrGI	TGTACA	1 cut(s)	1067
BsrI	ACTGG	5 cut(s)	21, 277, 319, 774, 814
BssECI	CCNNGG	2 cut(s)	211, 980
BssMI	GATC	3 cut(s)	41, 871, 1024
BssT1I	CCWWGG	1 cut(s)	980
Bst2UI	CCWGG	2 cut(s)	186, 855
Bst4CI	ACNGT	3 cut(s)	241, 493, 620
Bst6I	CTCTTC	3 cut(s)	70, 444, 1250
BstAUI	TGTACA	1 cut(s)	1067
BstC8I	GCNNGC	2 cut(s)	585, 1227
BstDEI	CTNAG	4 cut(s)	102, 180, 486, 1109
BstDSI	CCRYGG	2 cut(s)	211, 980
BstF5I	GGATG	5 cut(s)	5, 397, 591, 976, 1090
BstH2I	RGCGCY	1 cut(s)	584
BstHHI	GCGC	1 cut(s)	583
BstKTI	GATC	3 cut(s)	44, 874, 1027
BstMAI	GTCTC	3 cut(s)	98, 122, 482
BstMBI	GATC	3 cut(s)	41, 871, 1024
BstMWI	GCNNNNNNNGC	1 cut(s)	1079
BstNI	CCWGG	2 cut(s)	186, 855
BstNSI	RCATGY	2 cut(s)	263, 1229
BstSCI	CCNGG	2 cut(s)	184, 853
BstV2I	GAAGAC	1 cut(s)	1121
BstX2I	RGATCY	1 cut(s)	41
BstXI	CCANNNNNNTGG	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	41
BsuI	GTATCC	1 cut(s)	1097
BsuRI	GGCC	2 cut(s)	824, 1140
BtgI	CCRYGG	2 cut(s)	211, 980
BtsCI	GGATG	5 cut(s)	5, 397, 591, 976, 1090
BtsIMutI	CAGTG	2 cut(s)	781, 807
BveI	ACCTGC	1 cut(s)	648
Cac8I	GCNNGC	2 cut(s)	585, 1227
CaiI	CAGNNNCTG	1 cut(s)	847
CfoI	GCGC	1 cut(s)	583
Cfr13I	GGNCC	2 cut(s)	804, 1114
Csp6I	GTAC	3 cut(s)	270, 903, 1068
CviAII	CATG	7 cut(s)	191, 260, 286, 931, 981, 1226, 1249
CviQI	GTAC	3 cut(s)	270, 903, 1068
DdeI	CTNAG	4 cut(s)	102, 180, 486, 1109
DpnI	GATC	3 cut(s)	43, 873, 1026
DpnII	GATC	3 cut(s)	41, 871, 1024
DraI	TTTAAA	3 cut(s)	57, 417, 1168
DraIII	CACNNNGTG	2 cut(s)	212, 991
DriI	GACNNNNNGTC	1 cut(s)	239
EaeI	YGGCCR	2 cut(s)	822, 1138
Eam1104I	CTCTTC	3 cut(s)	70, 444, 1250
Eam1105I	GACNNNNNGTC	1 cut(s)	239
EarI	CTCTTC	3 cut(s)	70, 444, 1250
Ecl136II	GAGCTC	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	980
Eco24I	GRGCYC	1 cut(s)	65
Eco31I	GGTCTC	2 cut(s)	122, 482
Eco32I	GATATC	1 cut(s)	625
Eco47I	GGWCC	2 cut(s)	804, 1114
Eco53kI	GAGCTC	1 cut(s)	63
EcoICRI	GAGCTC	1 cut(s)	63
EcoO109I	RGGNCCY	1 cut(s)	1114
EcoRII	CCWGG	2 cut(s)	184, 853
EcoRV	GATATC	1 cut(s)	625
EcoT14I	CCWWGG	1 cut(s)	980
EcoT38I	GRGCYC	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	980
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	7 cut(s)	194, 263, 289, 934, 984, 1229, 1252
FalI	AAGNNNNNCTT	2 cut(s)	410, 442
FaqI	GGGAC	3 cut(s)	131, 1127, 1202
FatI	CATG	7 cut(s)	190, 259, 285, 930, 980, 1225, 1248
FbaI	TGATCA	1 cut(s)	871
FokI	GGATG	4 cut(s)	384, 578, 963, 1077
FriOI	GRGCYC	1 cut(s)	65
FspBI	CTAG	3 cut(s)	69, 392, 738
GlaI	GCGC	1 cut(s)	582
GsuI	CTGGAG	1 cut(s)	738
HaeII	RGCGCY	1 cut(s)	584
HaeIII	GGCC	2 cut(s)	824, 1140
HhaI	GCGC	1 cut(s)	583
Hin1II	CATG	7 cut(s)	194, 263, 289, 934, 984, 1229, 1252
Hin6I	GCGC	1 cut(s)	581
HinP1I	GCGC	1 cut(s)	581
HincII	GTYRAC	1 cut(s)	87
HindII	GTYRAC	1 cut(s)	87
HindIII	AAGCTT	1 cut(s)	1080
HinfI	GANTC	2 cut(s)	463, 934
HphI	GGTGA	3 cut(s)	608, 658, 869
Hpy166II	GTNNAC	6 cut(s)	87, 152, 649, 807, 905, 1207
Hpy188I	TCNGA	2 cut(s)	256, 570
Hpy8I	GTNNAC	6 cut(s)	87, 152, 649, 807, 905, 1207
HpyAV	CCTTC	1 cut(s)	331
HpyCH4III	ACNGT	3 cut(s)	241, 493, 620
HpyCH4IV	ACGT	1 cut(s)	1003
HpyCH4V	TGCA	7 cut(s)	385, 506, 576, 692, 791, 930, 1258
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1079
HpyF3I	CTNAG	4 cut(s)	102, 180, 486, 1109
HpySE526I	ACGT	1 cut(s)	1003
Hsp92II	CATG	7 cut(s)	194, 263, 289, 934, 984, 1229, 1252
HspAI	GCGC	1 cut(s)	581
KflI	GGGWCCC	1 cut(s)	1114
Ksp22I	TGATCA	1 cut(s)	871
Kzo9I	GATC	3 cut(s)	41, 871, 1024
LguI	GCTCTTC	1 cut(s)	70
LmnI	GCTCC	2 cut(s)	370, 757
LweI	GCATC	4 cut(s)	14, 378, 525, 670
MaeI	CTAG	3 cut(s)	69, 392, 738
MaeII	ACGT	1 cut(s)	1003
MaeIII	GTNAC	2 cut(s)	245, 614
MalI	GATC	3 cut(s)	43, 873, 1026
MbiI	CCGCTC	1 cut(s)	864
MboI	GATC	3 cut(s)	41, 871, 1024
MboII	GAAGA	7 cut(s)	57, 461, 929, 1019, 1033, 1121, 1237
MfeI	CAATTG	1 cut(s)	792
MflI	RGATCY	1 cut(s)	41
MhlI	GDGCHC	2 cut(s)	65, 754
MluCI	AATT	5 cut(s)	476, 598, 792, 950, 1057
MroXI	GAANNNNTTC	2 cut(s)	831, 1244
MseI	TTAA	6 cut(s)	56, 416, 552, 891, 954, 1167
MslI	CAYNNNNRTG	1 cut(s)	402
MspA1I	CMGCKG	1 cut(s)	532
MspR9I	CCNGG	2 cut(s)	186, 855
MunI	CAATTG	1 cut(s)	792
Mva1269I	GAATGC	1 cut(s)	1258
MvaI	CCWGG	2 cut(s)	186, 855
MwoI	GCNNNNNNNGC	1 cut(s)	1079
NcoI	CCATGG	1 cut(s)	980
NdeII	GATC	3 cut(s)	41, 871, 1024
NlaIII	CATG	7 cut(s)	194, 263, 289, 934, 984, 1229, 1252
NlaIV	GGNNCC	4 cut(s)	277, 772, 1115, 1116
NmuCI	GTSAC	1 cut(s)	614
NspI	RCATGY	2 cut(s)	263, 1229
PaeI	GCATGC	1 cut(s)	1229
PciI	ACATGT	1 cut(s)	259
PciSI	GCTCTTC	1 cut(s)	70
PctI	GAATGC	1 cut(s)	1258
PdmI	GAANNNNTTC	2 cut(s)	831, 1244
PfeI	GAWTC	2 cut(s)	463, 934
PpuMI	RGGWCCY	1 cut(s)	1114
PscI	ACATGT	1 cut(s)	259
Psp124BI	GAGCTC	1 cut(s)	65
Psp1406I	AACGTT	1 cut(s)	1003
Psp5II	RGGWCCY	1 cut(s)	1114
Psp6I	CCWGG	2 cut(s)	184, 853
PspGI	CCWGG	2 cut(s)	184, 853
PspN4I	GGNNCC	4 cut(s)	277, 772, 1115, 1116
PspPI	GGNCC	2 cut(s)	804, 1114
PspPPI	RGGWCCY	1 cut(s)	1114
PstNI	CAGNNNCTG	1 cut(s)	847
PsuI	RGATCY	1 cut(s)	41
PvuII	CAGCTG	1 cut(s)	532
RsaI	GTAC	3 cut(s)	271, 904, 1069
RsaNI	GTAC	3 cut(s)	270, 903, 1068
RseI	CAYNNNNRTG	1 cut(s)	402
SacI	GAGCTC	1 cut(s)	65
SapI	GCTCTTC	1 cut(s)	70
SaqAI	TTAA	6 cut(s)	56, 416, 552, 891, 954, 1167
Sau3AI	GATC	3 cut(s)	41, 871, 1024
Sau96I	GGNCC	2 cut(s)	804, 1114
ScrFI	CCNGG	2 cut(s)	186, 855
SduI	GDGCHC	2 cut(s)	65, 754
SfaNI	GCATC	4 cut(s)	14, 378, 525, 670
SinI	GGWCC	2 cut(s)	804, 1114
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	1 cut(s)	433
SmoI	CTYRAG	1 cut(s)	433
SphI	GCATGC	1 cut(s)	1229
Sse9I	AATT	5 cut(s)	476, 598, 792, 950, 1057
SsiI	CCGC	3 cut(s)	864, 962, 1172
SspI	AATATT	1 cut(s)	1049
SspMI	CTAG	3 cut(s)	69, 392, 738
SstI	GAGCTC	1 cut(s)	65
StyD4I	CCNGG	2 cut(s)	184, 853
StyI	CCWWGG	1 cut(s)	980
TaaI	ACNGT	3 cut(s)	241, 493, 620
TaiI	ACGT	1 cut(s)	1006
TaqI	TCGA	3 cut(s)	38, 78, 217
TaqII	GACCGA	1 cut(s)	146
TasI	AATT	5 cut(s)	476, 598, 792, 950, 1057
TatI	WGTACW	1 cut(s)	1067
TfiI	GAWTC	2 cut(s)	463, 934
Tru1I	TTAA	6 cut(s)	56, 416, 552, 891, 954, 1167
Tru9I	TTAA	6 cut(s)	56, 416, 552, 891, 954, 1167
TscAI	CASTG	2 cut(s)	781, 814
TseFI	GTSAC	1 cut(s)	614
Tsp45I	GTSAC	1 cut(s)	614
TspDTI	ATGAA	2 cut(s)	947, 1237
TspGWI	ACGGA	2 cut(s)	200, 1083
TspRI	CASTG	2 cut(s)	781, 814
VpaK11BI	GGWCC	2 cut(s)	804, 1114
XapI	RAATTY	2 cut(s)	476, 950
XbaI	TCTAGA	1 cut(s)	737
XceI	RCATGY	2 cut(s)	263, 1229
XcmI	CCANNNNNNNNNTGG	1 cut(s)	602
XmnI	GAANNNNTTC	2 cut(s)	831, 1244
XspI	CTAG	3 cut(s)	69, 392, 738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.