Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002559

Physical Location & Seq

Genomic Coordinates Forward (+)

32409994 .. 32416159

Gene Structure 6166 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG327100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCATCTGCTGGCAGTTCCAGGTCTGCGAATGGCTTCAAGAGTTCGTCGTCTAGTTCGGTTGACTGGCTTGGTAGGGAGATGCTTGAGATGCGATTGAAGGACAAGTCGGATCATCATCACGATGAGGATAGGGATAGTGAACCTGATATAATCGATGGTGCCGGTGCTGAAACAGGACATGTAATACGCACAACTGTTGGTGGTCGAGGTGGTCAATCTAGACAGACAGTGAGTTATATTTCAGAACATGTGGTTGGAACTGGCTCTTTTGGGGTTGTTTTCCAGGCAAAATGTAGAGAAACTGGAGAGATTGTTGCTATCAAGAAGGTTCTCCAAGACAAGCGTTACAAGAACCGGGAGTTACAGATTATGCAAATGTTGGATCATCCAAACATTGTTTCCCTAAAACATTGCTTCTTTTCAACTACAGACAAAGAAGAGGTTTACTTGAATCTCGTACTTGAATTTGTTCCTGAAACTGTTTACCGTATCGCAAGGAACTATAGCAGGATCAACCAGCGGATGCCTTTAATATATGTTAAACTTTATACCTACCAGATCTGTCGGGCACTTGCTTATATACATAATGGCATTGGCATCTGTCACCGTGACATCAAGCCTCAAAATTTACTTGTAAATCCACACACACATCAGCTGAAACTTTGTGATTTTGGGAGTGCAAAAGTCTTGGTAAAAGGAGAACCCAATGTGTCTTATATCTGCTCAAGATACTATCGTGCTCCAGAATTGATATTTGGTGCCACTGAGTACACAAGTGCTATTGATATTTGGTCTACAGGTTGTGTGATGGCTGAATTGCTTCTTGGACAGCCCCTGTTTCCTGGTGAAAGTGGAGTTGACCAACTAGTTGAGATCATTAAGGTGAGGTTATATATATCTATATATATGTCTAATGCAGGTCTCTTTTTTCTACTTTGCACGGTTTATATTTTAGCCATGCTTGGAAGTGGAAATGATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

328

Amino Acids

36.79

Weight (kDa)

7.15

Isoelectric Point (pI)

29.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	81 - 295	1.4e-55	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	84 - 278	1.4e-24	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G57870 AT1G57870 AT1G57870 AT1G57870
fragaria_vesca	FvH4_5g28620 FvH4_5g28620 FvH4_5g28620 FvH4_5g28620 FvH4_5g28620 FvH4_5g28620
malus_domestica	MD08G1243600.v1.1 MD15G1437800.v1.1
prunus_persica	Prupe.1G580900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0220561
rosa_laevigata	RLG00000002217
rosa_multiflora	Rmu_sc0025016.1_g000001 Rmu_ssc0000189.1_g000031
rosa_roxburghii	Rroxscaffold_3G00239300
rosa_rugosa	Rorug07G0194800 Rorug07G0194800 Rorug07G0194900 Rorug07G0195000
rosa_samantha	Rh2AG332300 Rh7AG336000 Rh7BG327100 Rh7CG353700 Rh7DG332300
rosa_wichuraiana	Rw0G017340 Rw7G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	911
AccB1I	GGYRCC	2 cut(s)	161, 761
AccI	GTMKAC	1 cut(s)	797
AciI	CCGC	1 cut(s)	523
AclWI	GGATC	3 cut(s)	120, 393, 521
AcsI	RAATTY	2 cut(s)	467, 628
AfaI	GTAC	2 cut(s)	462, 773
AflIII	ACRYGT	2 cut(s)	181, 250
AgsI	TTSAA	5 cut(s)	40, 100, 426, 454, 467
AhlI	ACTAGT	1 cut(s)	868
AjnI	CCWGG	3 cut(s)	20, 285, 844
AjuI	GAANNNNNNNTTGG	8 cut(s)	240, 272, 385, 417, 741, 773, 810, 842
AluBI	AGCT	1 cut(s)	658
AluI	AGCT	1 cut(s)	658
Alw21I	GWGCWC	1 cut(s)	745
Alw26I	GTCTC	1 cut(s)	929
AlwI	GGATC	3 cut(s)	120, 393, 521
AlwNI	CAGNNNCTG	1 cut(s)	838
ApoI	RAATTY	2 cut(s)	467, 628
Asp700I	GAANNNNTTC	3 cut(s)	35, 471, 822
AsuC2I	CCSGG	1 cut(s)	359
AsuHPI	GGTGA	3 cut(s)	599, 860, 898
BaeGI	GKGCMC	1 cut(s)	574
BaeI	ACNNNNGTAYC	2 cut(s)	724, 757
BanI	GGYRCC	2 cut(s)	161, 761
Bbv12I	GWGCWC	1 cut(s)	745
BccI	CCATC	2 cut(s)	152, 805
BciT130I	CCWGG	3 cut(s)	22, 287, 846
BcnI	CCSGG	1 cut(s)	359
BcoDI	GTCTC	1 cut(s)	929
BcuI	ACTAGT	1 cut(s)	868
BfaI	CTAG	3 cut(s)	54, 222, 869
BfmI	CTRYAG	3 cut(s)	429, 505, 798
BfuAI	ACCTGC	1 cut(s)	911
BglII	AGATCT	1 cut(s)	561
Bme1390I	CCNGG	4 cut(s)	22, 287, 359, 846
BmiI	GGNNCC	2 cut(s)	163, 763
BmrFI	CCNGG	4 cut(s)	22, 287, 359, 846
BmsI	GCATC	5 cut(s)	14, 72, 81, 516, 609
BpmI	CTGGAG	2 cut(s)	327, 729
BpuEI	CTTGAG	2 cut(s)	107, 712
BpuMI	CCSGG	1 cut(s)	359
Bsa29I	ATCGAT	1 cut(s)	156
BsaBI	GATNNNNATC	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	929
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	3 cut(s)	71, 268, 310
Bse3DI	GCAATG	1 cut(s)	412
Bse8I	GATNNNNATC	1 cut(s)	117
BseBI	CCWGG	3 cut(s)	22, 287, 846
BseCI	ATCGAT	1 cut(s)	156
BseGI	GGATG	2 cut(s)	388, 531
BseJI	GATNNNNATC	1 cut(s)	117
BseMI	GCAATG	1 cut(s)	412
BseMII	CTCAG	1 cut(s)	759
BseNI	ACTGG	3 cut(s)	71, 268, 310
BseSI	GKGCMC	1 cut(s)	574
BshNI	GGYRCC	2 cut(s)	161, 761
BshVI	ATCGAT	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	745
BsiSI	CCGG	2 cut(s)	165, 358
BsmAI	GTCTC	1 cut(s)	929
Bso31I	GGTCTC	1 cut(s)	929
Bsp1286I	GDGCHC	2 cut(s)	574, 745
Bsp143I	GATC	5 cut(s)	112, 385, 513, 561, 876
BspACI	CCGC	1 cut(s)	523
BspCNI	CTCAG	1 cut(s)	760
BspDI	ATCGAT	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	163, 763
BspMI	ACCTGC	1 cut(s)	911
BspPI	GGATC	3 cut(s)	120, 393, 521
BspT107I	GGYRCC	2 cut(s)	161, 761
BspTNI	GGTCTC	1 cut(s)	929
BsrDI	GCAATG	1 cut(s)	412
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	3 cut(s)	71, 268, 310
BssAI	RCCGGY	1 cut(s)	164
BssMI	GATC	5 cut(s)	112, 385, 513, 561, 876
Bst2UI	CCWGG	3 cut(s)	22, 287, 846
Bst4CI	ACNGT	6 cut(s)	199, 232, 484, 491, 611, 946
Bst6I	CTCTTC	1 cut(s)	435
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	1 cut(s)	768
BstF5I	GGATG	2 cut(s)	388, 531
BstKTI	GATC	5 cut(s)	115, 388, 516, 564, 879
BstMAI	GTCTC	1 cut(s)	929
BstMBI	GATC	5 cut(s)	112, 385, 513, 561, 876
BstMWI	GCNNNNNNNGC	1 cut(s)	91
BstNI	CCWGG	3 cut(s)	22, 287, 846
BstNSI	RCATGY	2 cut(s)	185, 254
BstSCI	CCNGG	4 cut(s)	20, 285, 357, 844
BstSFI	CTRYAG	3 cut(s)	429, 505, 798
BstSLI	GKGCMC	1 cut(s)	574
BstX2I	RGATCY	1 cut(s)	561
BstYI	RGATCY	1 cut(s)	561
Bsu15I	ATCGAT	1 cut(s)	156
BsuTUI	ATCGAT	1 cut(s)	156
BtsCI	GGATG	2 cut(s)	388, 531
BtsIMutI	CAGTG	2 cut(s)	237, 765
BveI	ACCTGC	1 cut(s)	911
Cac8I	GCNNGC	1 cut(s)	13
CaiI	CAGNNNCTG	1 cut(s)	838
Cfr10I	RCCGGY	1 cut(s)	164
ClaI	ATCGAT	1 cut(s)	156
Csp6I	GTAC	2 cut(s)	461, 772
CviAII	CATG	3 cut(s)	182, 251, 961
CviJI	RGCY	8 cut(s)	36, 70, 267, 622, 658, 815, 835, 959
CviKI_1	RGCY	8 cut(s)	36, 70, 267, 622, 658, 815, 835, 959
CviQI	GTAC	2 cut(s)	461, 772
DdeI	CTNAG	1 cut(s)	768
DpnI	GATC	5 cut(s)	114, 387, 515, 563, 878
DpnII	GATC	5 cut(s)	112, 385, 513, 561, 876
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
Eco31I	GGTCTC	1 cut(s)	929
EcoRII	CCWGG	3 cut(s)	20, 285, 844
FaeI	CATG	3 cut(s)	185, 254, 964
FatI	CATG	3 cut(s)	181, 250, 960
FblI	GTMKAC	1 cut(s)	797
FokI	GGATG	2 cut(s)	375, 538
FspBI	CTAG	3 cut(s)	54, 222, 869
GsuI	CTGGAG	2 cut(s)	327, 729
HapII	CCGG	2 cut(s)	165, 358
Hin1II	CATG	3 cut(s)	185, 254, 964
HincII	GTYRAC	2 cut(s)	64, 862
HindII	GTYRAC	2 cut(s)	64, 862
HinfI	GANTC	1 cut(s)	454
HpaII	CCGG	2 cut(s)	165, 358
HphI	GGTGA	3 cut(s)	599, 860, 898
Hpy166II	GTNNAC	7 cut(s)	64, 143, 448, 487, 774, 798, 862
Hpy188I	TCNGA	2 cut(s)	112, 247
Hpy188III	TCNNGA	7 cut(s)	40, 122, 222, 325, 476, 729, 746
Hpy8I	GTNNAC	7 cut(s)	64, 143, 448, 487, 774, 798, 862
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	2 cut(s)	94, 322
HpyCH4III	ACNGT	6 cut(s)	199, 232, 484, 491, 611, 946
HpyCH4V	TGCA	4 cut(s)	376, 683, 920, 942
HpyF10VI	GCNNNNNNNGC	1 cut(s)	91
HpyF3I	CTNAG	1 cut(s)	768
Hsp92II	CATG	3 cut(s)	185, 254, 964
Kzo9I	GATC	5 cut(s)	112, 385, 513, 561, 876
LmnI	GCTCC	1 cut(s)	748
LweI	GCATC	5 cut(s)	14, 72, 81, 516, 609
MaeI	CTAG	3 cut(s)	54, 222, 869
MaeIII	GTNAC	4 cut(s)	347, 363, 605, 611
MalI	GATC	5 cut(s)	114, 387, 515, 563, 878
MboI	GATC	5 cut(s)	112, 385, 513, 561, 876
MboII	GAAGA	1 cut(s)	452
MflI	RGATCY	1 cut(s)	561
MhlI	GDGCHC	2 cut(s)	574, 745
MluCI	AATT	4 cut(s)	467, 628, 749, 818
MmeI	TCCRAC	3 cut(s)	90, 238, 363
MnlI	CCTC	5 cut(s)	121, 203, 436, 633, 882
MroXI	GAANNNNTTC	3 cut(s)	35, 471, 822
MseI	TTAA	3 cut(s)	533, 543, 882
MslI	CAYNNNNRTG	2 cut(s)	123, 884
MspA1I	CMGCKG	2 cut(s)	523, 658
MspI	CCGG	2 cut(s)	165, 358
MspR9I	CCNGG	4 cut(s)	22, 287, 359, 846
MvaI	CCWGG	3 cut(s)	22, 287, 846
MwoI	GCNNNNNNNGC	1 cut(s)	91
NciI	CCSGG	1 cut(s)	359
NdeII	GATC	5 cut(s)	112, 385, 513, 561, 876
NlaIII	CATG	3 cut(s)	185, 254, 964
NlaIV	GGNNCC	2 cut(s)	163, 763
NmuCI	GTSAC	2 cut(s)	605, 611
NspI	RCATGY	2 cut(s)	185, 254
PciI	ACATGT	2 cut(s)	181, 250
PdmI	GAANNNNTTC	3 cut(s)	35, 471, 822
PfeI	GAWTC	1 cut(s)	454
PscI	ACATGT	2 cut(s)	181, 250
Psp6I	CCWGG	3 cut(s)	20, 285, 844
PspGI	CCWGG	3 cut(s)	20, 285, 844
PspN4I	GGNNCC	2 cut(s)	163, 763
PstNI	CAGNNNCTG	1 cut(s)	838
PsuI	RGATCY	1 cut(s)	561
PvuII	CAGCTG	1 cut(s)	658
RsaI	GTAC	2 cut(s)	462, 773
RsaNI	GTAC	2 cut(s)	461, 772
RseI	CAYNNNNRTG	2 cut(s)	123, 884
SaqAI	TTAA	3 cut(s)	533, 543, 882
Sau3AI	GATC	5 cut(s)	112, 385, 513, 561, 876
ScrFI	CCNGG	4 cut(s)	22, 287, 359, 846
SduI	GDGCHC	2 cut(s)	574, 745
SfaNI	GCATC	5 cut(s)	14, 72, 81, 516, 609
SfcI	CTRYAG	3 cut(s)	429, 505, 798
SmiMI	CAYNNNNRTG	2 cut(s)	123, 884
SmlI	CTYRAG	2 cut(s)	86, 727
SmoI	CTYRAG	2 cut(s)	86, 727
SpeI	ACTAGT	1 cut(s)	868
Sse9I	AATT	4 cut(s)	467, 628, 749, 818
SsiI	CCGC	1 cut(s)	523
SspMI	CTAG	3 cut(s)	54, 222, 869
StyD4I	CCNGG	4 cut(s)	20, 285, 357, 844
TaaI	ACNGT	6 cut(s)	199, 232, 484, 491, 611, 946
TaqI	TCGA	2 cut(s)	156, 208
TasI	AATT	4 cut(s)	467, 628, 749, 818
TatI	WGTACW	1 cut(s)	771
TfiI	GAWTC	1 cut(s)	454
Tru1I	TTAA	3 cut(s)	533, 543, 882
Tru9I	TTAA	3 cut(s)	533, 543, 882
TscAI	CASTG	2 cut(s)	237, 772
TseFI	GTSAC	2 cut(s)	605, 611
Tsp45I	GTSAC	2 cut(s)	605, 611
TspRI	CASTG	2 cut(s)	237, 772
XapI	RAATTY	2 cut(s)	467, 628
XbaI	TCTAGA	1 cut(s)	221
XceI	RCATGY	2 cut(s)	185, 254
XmiI	GTMKAC	1 cut(s)	797
XmnI	GAANNNNTTC	3 cut(s)	35, 471, 822
XspI	CTAG	3 cut(s)	54, 222, 869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.