Rorug07G0194800
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
16612000 .. 16621101
9102 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0194800.1

Sequence Viewer

Length: 1209 bp
ATGGCCAATGCATCTGGGTTCTTTACTACTCCTTCAGTTCCGAGCCTGAGGAGGAAGATTCAGCCTTCAATAGCCATTTTTGGATCTGGGTTTCGCTCCCCTGAGGGAATCTCCGGGAGGGTAGTGTTCTGTTCCAGCGCTGAGAAGCAAGCTGGAGCTACTTCCTCTTCTGAATCTAGAGCACCCAGGCTTGTCAGTAAAGGCTGCAAATTAGTCGGGTGTGGCTCAGCAGTGCCCAGTCTTAAGATTTCAAATGACGAGCTTTCAAAAATAGTAGACACTAATGATGAATGGATATCTGTTCGCACTGGGATTCGTAATCGACGAGTTATTTCAGGCAAAGAAAGCCTAACCTTATTAGCATCTGAGGCTGCAAAGAAAGCTCTTGAGATGGCACAGGTTGATGCTGATGATGTAGACCTAATCTTGATGTGCACCTCTACACCTGATGATCTTTTTGGCGGTGCTCCTCAGGTTCAAAAAGCACTTGGCTGCAAAAAGAACCCCTTGTCCTATGATATTACAGCTGCTTGTAGTGGATTCGTGTTGGGTTTAGTATCAGCTGCTTGTCACATTAGGGGAGGTGGATTCAAAAATGTTCTAGTTATTGGGGCTGATGCTCTTTCTCGGATTGTTGACTGGTCCGACAGAGGAACTTGTATTCTCTTTGGGGATGCTGCCGGGGCTGTTTTAATACAGGCCACTGACACTGAGGAGGATTTCTTACTTGGTTTTGACGTTCATAGTGATGGTGATGGAAACAGACATCTAAATGCTCCGTTGAAAGGAAATGAAACAGATAGTGAATTGGGTTCTAATGGTTCAGTCTTAAACTTCCCTCCAAGACGCTCTTCATATTCTTGCGTTCAAATGAATGGAAAAGAAGTCTTTCGGTTTGCATGTCGATGTGTGCCACAATCAATTGAGAATTCACTTGCGAATGCTGGTATTCCTGCATCTAGCATTGACTGGTTACTGCTCCATCAGGCAAACCAGAGGATTCTTGATGCAGTTTCTAGTCGCTTGGAAATCCCATCAGAACAGGTCATTTCAAATTTGGCGAACTATGGTAACACCAGTGCCGCTTCCATTCCTTTGGCATTGGATGAATCTGTAAGAAGTGGCAAGGTGCGACCAGGCCAGACAATAGCAGCTGCAGGCTTCGGAGCAGGTCTCACTTGGGGTTCTGCCATTGTAAGATGGGGTTGA

Protein Analysis

402

Amino Acids

42.27

Weight (kDa)

6.46

Isoelectric Point (pI)

39.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACP_syn_III PF08545 172 - 251 3.4e-28 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
ACP_syn_III_C PF08541 312 - 401 9.6e-36 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1160
AccI GTMKAC 2 cut(s) 276, 417
AciI CCGC 2 cut(s) 462, 1083
AclWI GGATC 1 cut(s) 91
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 928, 1054
AcuI CTGAAG 1 cut(s) 18
AfeI AGCGCT 1 cut(s) 139
AfiI CCNNNNNNNGG 1 cut(s) 785
AflII CTTAAG 1 cut(s) 242
AgsI TTSAA 8 cut(s) 69, 252, 267, 479, 592, 784, 869, 1053
AjnI CCWGG 2 cut(s) 185, 1135
AjuI GAANNNNNNNTTGG 2 cut(s) 835, 867
AloI GAACNNNNNNTCC 2 cut(s) 494, 526
AluBI AGCT 7 cut(s) 152, 158, 262, 383, 527, 563, 1154
AluI AGCT 7 cut(s) 152, 158, 262, 383, 527, 563, 1154
Alw21I GWGCWC 3 cut(s) 184, 437, 469
Alw26I GTCTC 1 cut(s) 1178
Alw44I GTGCAC 1 cut(s) 433
AlwI GGATC 1 cut(s) 91
Aor51HI AGCGCT 1 cut(s) 139
AoxI GGCC 3 cut(s) 3, 699, 1138
ApaLI GTGCAC 1 cut(s) 433
ApeKI GCWGC 8 cut(s) 204, 371, 492, 527, 563, 677, 1151, 1154
ApoI RAATTY 2 cut(s) 928, 1054
Asp700I GAANNNNTTC 1 cut(s) 888
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 642
AsuC2I CCSGG 2 cut(s) 115, 682
AsuHPI GGTGA 1 cut(s) 764
AvaII GGWCC 1 cut(s) 642
AxyI CCTNAGG 3 cut(s) 47, 102, 471
BaeGI GKGCMC 2 cut(s) 237, 437
BalI TGGCCA 1 cut(s) 5
Bbv12I GWGCWC 3 cut(s) 184, 437, 469
BbvI GCAGC 8 cut(s) 191, 358, 479, 514, 550, 664, 1141, 1163
BccI CCATC 6 cut(s) 385, 743, 749, 990, 1042, 1194
BcgI CGANNNNNNTGC 2 cut(s) 196, 230
BciT130I CCWGG 2 cut(s) 187, 1137
BcnI CCSGG 2 cut(s) 115, 682
BcoDI GTCTC 1 cut(s) 1178
BfaI CTAG 4 cut(s) 177, 602, 960, 1017
BfmI CTRYAG 1 cut(s) 1155
BfoI RGCGCY 1 cut(s) 141
BfrI CTTAAG 1 cut(s) 242
BfuAI ACCTGC 1 cut(s) 1160
BisI GCNGC 9 cut(s) 205, 372, 493, 528, 564, 678, 1083, 1152, 1155
BlpI GCTNAGC 1 cut(s) 226
BlsI GCNGC 9 cut(s) 206, 373, 494, 529, 565, 679, 1084, 1153, 1156
Bme1390I CCNGG 4 cut(s) 115, 187, 682, 1137
Bme18I GGWCC 1 cut(s) 642
BmgT120I GGNCC 1 cut(s) 642
BmrFI CCNGG 4 cut(s) 115, 187, 682, 1137
BmrI ACTGGG 2 cut(s) 231, 318
BmsI GCATC 7 cut(s) 20, 371, 394, 607, 664, 965, 997
BmuI ACTGGG 2 cut(s) 231, 318
BplI GAGNNNNNCTC 4 cut(s) 95, 127, 1158, 1190
BpmI CTGGAG 1 cut(s) 174
Bpu1102I GCTNAGC 1 cut(s) 226
BpuEI CTTGAG 1 cut(s) 407
BpuMI CCSGG 2 cut(s) 115, 682
BsaI GGTCTC 1 cut(s) 1178
BsaJI CCNNGG 2 cut(s) 185, 681
Bsc4I CCNNNNNNNGG 1 cut(s) 785
Bse1I ACTGG 5 cut(s) 237, 313, 644, 974, 1077
Bse21I CCTNAGG 3 cut(s) 47, 102, 471
BseBI CCWGG 2 cut(s) 187, 1137
BseDI CCNNGG 2 cut(s) 185, 681
BseGI GGATG 2 cut(s) 679, 1111
BseLI CCNNNNNNNGG 1 cut(s) 785
BseMII CTCAG 7 cut(s) 38, 93, 132, 240, 357, 485, 702
BseNI ACTGG 5 cut(s) 237, 313, 644, 974, 1077
BseRI GAGGAG 3 cut(s) 64, 459, 728
BseSI GKGCMC 2 cut(s) 237, 437
BseXI GCAGC 8 cut(s) 191, 358, 479, 514, 550, 664, 1141, 1163
BshFI GGCC 3 cut(s) 5, 701, 1140
BsiHKAI GWGCWC 3 cut(s) 184, 437, 469
BsiSI CCGG 2 cut(s) 114, 681
BslI CCNNNNNNNGG 1 cut(s) 785
BsmAI GTCTC 1 cut(s) 1178
BsmI GAATGC 1 cut(s) 946
BsnI GGCC 3 cut(s) 5, 701, 1140
Bso31I GGTCTC 1 cut(s) 1178
Bsp1286I GDGCHC 4 cut(s) 184, 237, 437, 469
Bsp143I GATC 2 cut(s) 83, 451
Bsp1720I GCTNAGC 1 cut(s) 226
BspACI CCGC 2 cut(s) 462, 1083
BspANI GGCC 3 cut(s) 5, 701, 1140
BspCNI CTCAG 7 cut(s) 39, 94, 133, 239, 358, 484, 703
BspMAI CTGCAG 1 cut(s) 1159
BspMI ACCTGC 1 cut(s) 1160
BspPI GGATC 1 cut(s) 91
BspQI GCTCTTC 1 cut(s) 856
BspTI CTTAAG 1 cut(s) 242
BspTNI GGTCTC 1 cut(s) 1178
BsrI ACTGG 5 cut(s) 237, 313, 644, 974, 1077
BssECI CCNNGG 2 cut(s) 185, 681
BssMI GATC 2 cut(s) 83, 451
Bst2UI CCWGG 2 cut(s) 187, 1137
Bst6I CTCTTC 2 cut(s) 172, 856
BstAFI CTTAAG 1 cut(s) 242
BstC8I GCNNGC 2 cut(s) 150, 1159
BstDEI CTNAG 7 cut(s) 47, 102, 141, 226, 366, 471, 711
BstF5I GGATG 2 cut(s) 679, 1111
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 2 cut(s) 86, 454
BstMAI GTCTC 1 cut(s) 1178
BstMBI GATC 2 cut(s) 83, 451
BstMWI GCNNNNNNNGC 4 cut(s) 345, 368, 380, 683
BstNI CCWGG 2 cut(s) 187, 1137
BstNSI RCATGY 1 cut(s) 903
BstSCI CCNGG 4 cut(s) 113, 185, 680, 1135
BstSFI CTRYAG 1 cut(s) 1155
BstSLI GKGCMC 2 cut(s) 237, 437
BstV1I GCAGC 8 cut(s) 191, 358, 479, 514, 550, 664, 1141, 1163
BstX2I RGATCY 1 cut(s) 83
BstXI CCANNNNNNTGG 1 cut(s) 1096
BstYI RGATCY 1 cut(s) 83
Bsu36I CCTNAGG 3 cut(s) 47, 102, 471
BsuRI GGCC 3 cut(s) 5, 701, 1140
BtsCI GGATG 2 cut(s) 679, 1111
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 5 cut(s) 237, 306, 702, 708, 1084
BveI ACCTGC 1 cut(s) 1160
Cac8I GCNNGC 2 cut(s) 150, 1159
CfoI GCGC 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 642
CseI GACGC 1 cut(s) 855
CviAII CATG 1 cut(s) 900
DdeI CTNAG 7 cut(s) 47, 102, 141, 226, 366, 471, 711
DpnI GATC 2 cut(s) 85, 453
DpnII GATC 2 cut(s) 83, 451
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 172, 856
EarI CTCTTC 2 cut(s) 172, 856
Eco31I GGTCTC 1 cut(s) 1178
Eco32I GATATC 1 cut(s) 297
Eco47I GGWCC 1 cut(s) 642
Eco47III AGCGCT 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 18
Eco81I CCTNAGG 3 cut(s) 47, 102, 471
EcoRI GAATTC 1 cut(s) 928
EcoRII CCWGG 2 cut(s) 185, 1135
EcoRV GATATC 1 cut(s) 297
EcoT22I ATGCAT 1 cut(s) 13
FaeI CATG 1 cut(s) 903
FaiI YATR 5 cut(s) 516, 744, 856, 901, 1068
FalI AAGNNNNNCTT 4 cut(s) 491, 523, 835, 867
FatI CATG 1 cut(s) 899
FblI GTMKAC 2 cut(s) 276, 417
Fnu4HI GCNGC 9 cut(s) 205, 372, 493, 528, 564, 678, 1083, 1152, 1155
FokI GGATG 2 cut(s) 686, 1118
Fsp4HI GCNGC 9 cut(s) 205, 372, 493, 528, 564, 678, 1083, 1152, 1155
FspBI CTAG 4 cut(s) 177, 602, 960, 1017
GlaI GCGC 1 cut(s) 139
GluI GCNGC 9 cut(s) 205, 372, 493, 528, 564, 678, 1083, 1152, 1155
GsuI CTGGAG 1 cut(s) 174
HaeII RGCGCY 1 cut(s) 141
HaeIII GGCC 3 cut(s) 5, 701, 1140
HapII CCGG 2 cut(s) 114, 681
HgaI GACGC 1 cut(s) 855
HhaI GCGC 1 cut(s) 140
Hin1II CATG 1 cut(s) 903
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HincII GTYRAC 1 cut(s) 637
HindII GTYRAC 1 cut(s) 637
HinfI GANTC 8 cut(s) 58, 108, 173, 313, 540, 588, 1000, 1109
HpaII CCGG 2 cut(s) 114, 681
HphI GGTGA 1 cut(s) 764
Hpy166II GTNNAC 4 cut(s) 277, 418, 435, 637
Hpy188I TCNGA 7 cut(s) 42, 172, 367, 630, 646, 1039, 1166
Hpy188III TCNNGA 4 cut(s) 177, 386, 427, 1004
Hpy8I GTNNAC 4 cut(s) 277, 418, 435, 637
Hpy99I CGWCG 1 cut(s) 327
HpyAV CCTTC 2 cut(s) 42, 75
HpyCH4IV ACGT 1 cut(s) 738
HpyCH4V TGCA 9 cut(s) 11, 207, 374, 435, 495, 899, 956, 1010, 1157
HpyF10VI GCNNNNNNNGC 4 cut(s) 345, 368, 380, 683
HpyF3I CTNAG 7 cut(s) 47, 102, 141, 226, 366, 471, 711
HpySE526I ACGT 1 cut(s) 738
Hsp92II CATG 1 cut(s) 903
HspAI GCGC 1 cut(s) 138
Kzo9I GATC 2 cut(s) 83, 451
LguI GCTCTTC 1 cut(s) 856
LmnI GCTCC 6 cut(s) 101, 155, 472, 781, 984, 1166
Lsp1109I GCAGC 8 cut(s) 191, 358, 479, 514, 550, 664, 1141, 1163
LweI GCATC 7 cut(s) 20, 371, 394, 607, 664, 965, 997
MaeI CTAG 4 cut(s) 177, 602, 960, 1017
MaeII ACGT 1 cut(s) 738
MaeIII GTNAC 3 cut(s) 569, 972, 1070
MalI GATC 2 cut(s) 85, 453
MboI GATC 2 cut(s) 83, 451
MboII GAAGA 3 cut(s) 67, 159, 843
MfeI CAATTG 1 cut(s) 921
MflI RGATCY 1 cut(s) 83
MhlI GDGCHC 4 cut(s) 184, 237, 437, 469
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 209, 806, 921, 928, 1054
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 669
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 13
MroXI GAANNNNTTC 1 cut(s) 888
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 243, 692, 830
MslI CAYNNNNRTG 3 cut(s) 747, 771, 904
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 3 cut(s) 527, 563, 1154
MspCI CTTAAG 1 cut(s) 242
MspI CCGG 2 cut(s) 114, 681
MspR9I CCNGG 4 cut(s) 115, 187, 682, 1137
MunI CAATTG 1 cut(s) 921
Mva1269I GAATGC 1 cut(s) 946
MvaI CCWGG 2 cut(s) 187, 1137
MwoI GCNNNNNNNGC 4 cut(s) 345, 368, 380, 683
NciI CCSGG 2 cut(s) 115, 682
NdeII GATC 2 cut(s) 83, 451
NlaIII CATG 1 cut(s) 903
NmuCI GTSAC 1 cut(s) 569
NsiI ATGCAT 1 cut(s) 13
NspI RCATGY 1 cut(s) 903
PciSI GCTCTTC 1 cut(s) 856
PcsI WCGNNNNNNNCGW 1 cut(s) 322
PctI GAATGC 1 cut(s) 946
PdmI GAANNNNTTC 1 cut(s) 888
PfeI GAWTC 8 cut(s) 58, 108, 173, 313, 540, 588, 1000, 1109
PfoI TCCNGGA 1 cut(s) 113
PkrI GCNGC 9 cut(s) 206, 373, 494, 529, 565, 679, 1084, 1153, 1156
Psp6I CCWGG 2 cut(s) 185, 1135
PspGI CCWGG 2 cut(s) 185, 1135
PspPI GGNCC 1 cut(s) 642
PstI CTGCAG 1 cut(s) 1159
PsuI RGATCY 1 cut(s) 83
PvuII CAGCTG 3 cut(s) 527, 563, 1154
RseI CAYNNNNRTG 3 cut(s) 747, 771, 904
SapI GCTCTTC 1 cut(s) 856
SaqAI TTAA 3 cut(s) 243, 692, 830
SatI GCNGC 9 cut(s) 205, 372, 493, 528, 564, 678, 1083, 1152, 1155
Sau3AI GATC 2 cut(s) 83, 451
Sau96I GGNCC 1 cut(s) 642
ScrFI CCNGG 4 cut(s) 115, 187, 682, 1137
SduI GDGCHC 4 cut(s) 184, 237, 437, 469
SfaNI GCATC 7 cut(s) 20, 371, 394, 607, 664, 965, 997
SfcI CTRYAG 1 cut(s) 1155
SinI GGWCC 1 cut(s) 642
SmiMI CAYNNNNRTG 3 cut(s) 747, 771, 904
SmlI CTYRAG 2 cut(s) 242, 386
SmoI CTYRAG 2 cut(s) 242, 386
Sse9I AATT 5 cut(s) 209, 806, 921, 928, 1054
SsiI CCGC 2 cut(s) 462, 1083
SspMI CTAG 4 cut(s) 177, 602, 960, 1017
StyD4I CCNGG 4 cut(s) 113, 185, 680, 1135
TaiI ACGT 1 cut(s) 741
TaqI TCGA 2 cut(s) 322, 904
TasI AATT 5 cut(s) 209, 806, 921, 928, 1054
TauI GCSGC 1 cut(s) 1085
TfiI GAWTC 8 cut(s) 58, 108, 173, 313, 540, 588, 1000, 1109
Tru1I TTAA 3 cut(s) 243, 692, 830
Tru9I TTAA 3 cut(s) 243, 692, 830
TscAI CASTG 5 cut(s) 237, 313, 709, 715, 1084
TseFI GTSAC 1 cut(s) 569
TseI GCWGC 8 cut(s) 204, 371, 492, 527, 563, 677, 1151, 1154
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 6 cut(s) 303, 731, 807, 843, 887, 1122
TspGWI ACGGA 1 cut(s) 768
TspRI CASTG 5 cut(s) 237, 313, 709, 715, 1084
Vha464I CTTAAG 1 cut(s) 242
VneI GTGCAC 1 cut(s) 433
VpaK11BI GGWCC 1 cut(s) 642
XapI RAATTY 2 cut(s) 928, 1054
XbaI TCTAGA 1 cut(s) 176
XceI RCATGY 1 cut(s) 903
XmiI GTMKAC 2 cut(s) 276, 417
XmnI GAANNNNTTC 1 cut(s) 888
XspI CTAG 4 cut(s) 177, 602, 960, 1017
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.