Rmu_ssc0000189.1_g000031
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000189.1
Physical Location & Seq
Reverse (-)
218230 .. 223608
5379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000189.1_g000031.1.cds

Sequence Viewer

Length: 1695 bp
atggcatctgctggcagttccaggtctgcgaatggcttcaagagttcgtcgtctagttcggttgactggctcggtagggagatgcttgagatgcgattgaaggacaagtcggatcatcatcaggatgaggatagagatagtgaacctgatataattgatggtgcgggtgcggaaacaggacatgtaatacgcacaactgttggcggtcgaggtggtcaatctagacaggatagtgaacctgatataattgatggtgcgggtgctgaaacaggacatgtaatacgcacaactgttggcggtcgaggtggtcaatctagacagacagtgagttatatttcagaacatgtggttggaactggctcttttggggttgttttccaggcgaaatgtagagaaactggagagattgttgctatcaagaaggttctccaagacaagcgttacaagaaccgggagttacagattatgcaaatgttggatcatccaaacattgtttccctaaaacattgcttcttttcaactacagacaaagaagaggtttacctgaatctcgtacttgaatttgttcctgaaactgtttaccgtatcgcaaggaactatagcaggatcaaccagcggatgcctttaatatatgttaaactttatacctaccagatctgtcgggcacttgcttatatacataatggcattggcatctgtcaccgtgacatcaagcctcaaaatttacttgtaaatccacacacacatcagctgaaactttgtgattttgggagtgcaaaagtcttggtaaaaggagaacccaatgtgtcttatatctgctcaagatactatcgtgctccagaactgatatttggtgccactgagtacacaagtgctattgatatatggtctacaggttgtgtgatggccgaattgcttcttggacagcccctgtttcctggtgaaagtggagttgaccaactagttgagatcattaaggtgagaggtcggagggcgagtcaggctcgatggattgagggatcggttcgcagggttgaccggttggtgggaggaaacagtgtggaggaggttcttagccggatcggagtggggattgctgaatggatgcacggcggtgggttgggagcagcagtgcaattccgggttggtggttctggatccttggatacatacgggtggctgtgcctcatggggctttggttggtgataccgaccacccaatcggaaagtttagttcgtgtaacacttgactccatcttcggccgggtggctgtgcctcatggggctttggtcggtgatcgatggataggatttgcactcggcaagtttcgccaccgatacttttccttgaacaacataagcatcgttttgggaactccaacgagggaggagataaagtgcatgaatccaaactatactgaatttaagttcccacagataaagcctcatccatggcacaaggtatttcaaaaacgcttgcctccagaagcagtagatcttgtttgtaggttttttcagtattcgcccaatttgcgatgcactgctttggaagcttgcattcaccctttctttgatgaattgagagacccaaatacccgccttcctaatggccgccctcttcctcctctgtttaatttcaaaacccaaggtgagtttgaactagcttctattgtggtaaacatgtcttctcggtga

Protein Analysis

564

Amino Acids

63.02

Weight (kDa)

8.71

Isoelectric Point (pI)

39.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 854
AccI GTMKAC 1 cut(s) 890
AciI CCGC 9 cut(s) 164, 170, 204, 257, 297, 616, 1113, 1597, 1612
AclWI GGATC 7 cut(s) 120, 486, 614, 1027, 1088, 1152, 1165
AcoI YGGCCR 3 cut(s) 906, 1261, 1609
AcsI RAATTY 3 cut(s) 560, 721, 1421
AfaI GTAC 2 cut(s) 555, 866
AfiI CCNNNNNNNGG 1 cut(s) 1045
AflIII ACRYGT 4 cut(s) 181, 274, 343, 1680
AgeI ACCGGT 1 cut(s) 1038
AgsI TTSAA 8 cut(s) 40, 100, 519, 560, 1351, 1469, 1639, 1658
AhlI ACTAGT 1 cut(s) 961
AjnI CCWGG 3 cut(s) 20, 378, 937
AjuI GAANNNNNNNTTGG 8 cut(s) 333, 365, 478, 510, 834, 866, 903, 935
AleI CACNNNNGTG 1 cut(s) 1113
AluBI AGCT 3 cut(s) 751, 1553, 1664
AluI AGCT 3 cut(s) 751, 1553, 1664
Alw21I GWGCWC 1 cut(s) 838
Alw26I GTCTC 1 cut(s) 1578
AlwI GGATC 7 cut(s) 120, 486, 614, 1027, 1088, 1152, 1165
AlwNI CAGNNNCTG 1 cut(s) 931
AoxI GGCC 3 cut(s) 906, 1261, 1609
ApeKI GCWGC 1 cut(s) 1127
ApoI RAATTY 3 cut(s) 560, 721, 1421
ArsI GACNNNNNNTTYG 2 cut(s) 1241, 1273
AsiGI ACCGGT 1 cut(s) 1038
Asp700I GAANNNNTTC 3 cut(s) 35, 564, 915
AsuC2I CCSGG 3 cut(s) 452, 1142, 1265
AsuHPI GGTGA 7 cut(s) 692, 953, 991, 1216, 1307, 1553, 1661
BaeGI GKGCMC 1 cut(s) 667
BaeI ACNNNNGTAYC 2 cut(s) 817, 850
BamHI GGATCC 1 cut(s) 1157
BanI GGYRCC 1 cut(s) 854
BbsI GAAGAC 1 cut(s) 1677
Bbv12I GWGCWC 1 cut(s) 838
BbvI GCAGC 1 cut(s) 1139
BccI CCATC 6 cut(s) 152, 245, 898, 1002, 1262, 1296
BceAI ACGGC 1 cut(s) 1126
BciT130I CCWGG 3 cut(s) 22, 380, 939
BciVI GTATCC 1 cut(s) 1159
BcnI CCSGG 3 cut(s) 452, 1142, 1265
BcoDI GTCTC 1 cut(s) 1578
BcuI ACTAGT 1 cut(s) 961
BfaI CTAG 5 cut(s) 54, 222, 315, 962, 1661
BfmI CTRYAG 3 cut(s) 522, 598, 891
BfuI GTATCC 1 cut(s) 1159
BglII AGATCT 2 cut(s) 654, 1495
BisI GCNGC 2 cut(s) 1128, 1612
BlsI GCNGC 2 cut(s) 1129, 1613
Bme1390I CCNGG 6 cut(s) 22, 380, 452, 939, 1142, 1265
BmiI GGNNCC 2 cut(s) 856, 1159
BmrFI CCNGG 6 cut(s) 22, 380, 452, 939, 1142, 1265
BmsI GCATC 8 cut(s) 14, 72, 81, 609, 702, 1095, 1371, 1526
BpiI GAAGAC 1 cut(s) 1677
BplI GAGNNNNNCTC 2 cut(s) 988, 1020
BpmI CTGGAG 3 cut(s) 420, 822, 1467
BpuEI CTTGAG 2 cut(s) 107, 805
BpuMI CCSGG 3 cut(s) 452, 1142, 1265
Bsa29I ATCGAT 1 cut(s) 1300
BsaBI GATNNNNATC 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 1578
BsaJI CCNNGG 3 cut(s) 1161, 1451, 1645
BsaWI WCCGGW 1 cut(s) 1038
BsaXI ACNNNNNCTCC 8 cut(s) 393, 423, 982, 1012, 1116, 1146, 1382, 1412
Bsc4I CCNNNNNNNGG 1 cut(s) 1045
Bse118I RCCGGY 1 cut(s) 1038
Bse1I ACTGG 3 cut(s) 71, 361, 403
Bse3DI GCAATG 1 cut(s) 505
Bse8I GATNNNNATC 1 cut(s) 117
BseBI CCWGG 3 cut(s) 22, 380, 939
BseCI ATCGAT 1 cut(s) 1300
BseDI CCNNGG 3 cut(s) 1161, 1451, 1645
BseGI GGATG 5 cut(s) 130, 481, 624, 1110, 1447
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 1045
BseMI GCAATG 1 cut(s) 505
BseMII CTCAG 1 cut(s) 852
BseNI ACTGG 3 cut(s) 71, 361, 403
BseRI GAGGAG 3 cut(s) 1079, 1403, 1614
BseSI GKGCMC 1 cut(s) 667
BseX3I CGGCCG 1 cut(s) 1261
BseXI GCAGC 1 cut(s) 1139
Bsh1285I CGRYCG 3 cut(s) 208, 301, 1264
BshFI GGCC 3 cut(s) 908, 1263, 1611
BshNI GGYRCC 1 cut(s) 854
BshTI ACCGGT 1 cut(s) 1038
BshVI ATCGAT 1 cut(s) 1300
BsiEI CGRYCG 3 cut(s) 208, 301, 1264
BsiHKAI GWGCWC 1 cut(s) 838
BsiSI CCGG 5 cut(s) 451, 1039, 1078, 1141, 1264
BslI CCNNNNNNNGG 1 cut(s) 1045
BsmAI GTCTC 1 cut(s) 1578
BsmI GAATGC 1 cut(s) 1557
BsnI GGCC 3 cut(s) 908, 1263, 1611
Bso31I GGTCTC 1 cut(s) 1578
Bsp1286I GDGCHC 2 cut(s) 667, 838
Bsp19I CCATGG 1 cut(s) 1451
BspACI CCGC 9 cut(s) 164, 170, 204, 257, 297, 616, 1113, 1597, 1612
BspANI GGCC 3 cut(s) 908, 1263, 1611
BspCNI CTCAG 1 cut(s) 853
BspDI ATCGAT 1 cut(s) 1300
BspLI GGNNCC 2 cut(s) 856, 1159
BspPI GGATC 7 cut(s) 120, 486, 614, 1027, 1088, 1152, 1165
BspT107I GGYRCC 1 cut(s) 854
BspTNI GGTCTC 1 cut(s) 1578
BsrDI GCAATG 1 cut(s) 505
BsrFI RCCGGY 1 cut(s) 1038
BsrI ACTGG 3 cut(s) 71, 361, 403
BssAI RCCGGY 1 cut(s) 1038
BssECI CCNNGG 3 cut(s) 1161, 1451, 1645
BssT1I CCWWGG 3 cut(s) 1161, 1451, 1645
Bst2UI CCWGG 3 cut(s) 22, 380, 939
Bst4CI ACNGT 7 cut(s) 199, 292, 325, 577, 584, 704, 1058
Bst6I CTCTTC 2 cut(s) 528, 1623
BstC8I GCNNGC 3 cut(s) 13, 1478, 1555
BstDEI CTNAG 2 cut(s) 861, 1073
BstDSI CCRYGG 1 cut(s) 1451
BstF5I GGATG 5 cut(s) 130, 481, 624, 1110, 1447
BstMAI GTCTC 1 cut(s) 1578
BstMCI CGRYCG 3 cut(s) 208, 301, 1264
BstMWI GCNNNNNNNGC 5 cut(s) 91, 1001, 1329, 1531, 1550
BstNI CCWGG 3 cut(s) 22, 380, 939
BstNSI RCATGY 4 cut(s) 185, 278, 347, 1684
BstSCI CCNGG 6 cut(s) 20, 378, 450, 937, 1140, 1263
BstSFI CTRYAG 3 cut(s) 522, 598, 891
BstSLI GKGCMC 1 cut(s) 667
BstV1I GCAGC 1 cut(s) 1139
BstV2I GAAGAC 1 cut(s) 1677
BstX2I RGATCY 3 cut(s) 654, 1157, 1495
BstYI RGATCY 3 cut(s) 654, 1157, 1495
BstZI CGGCCG 1 cut(s) 1261
Bsu15I ATCGAT 1 cut(s) 1300
BsuI GTATCC 1 cut(s) 1159
BsuRI GGCC 3 cut(s) 908, 1263, 1611
BsuTUI ATCGAT 1 cut(s) 1300
BtgI CCRYGG 1 cut(s) 1451
BtgZI GCGATG 1 cut(s) 1549
BtsCI GGATG 5 cut(s) 130, 481, 624, 1110, 1447
BtsI GCAGTG 2 cut(s) 1137, 1539
BtsIMutI CAGTG 5 cut(s) 330, 858, 1063, 1137, 1539
Cac8I GCNNGC 3 cut(s) 13, 1478, 1555
CaiI CAGNNNCTG 1 cut(s) 931
Cfr10I RCCGGY 1 cut(s) 1038
ClaI ATCGAT 1 cut(s) 1300
Csp6I GTAC 2 cut(s) 554, 865
CspAI ACCGGT 1 cut(s) 1038
CviAII CATG 8 cut(s) 182, 275, 344, 1189, 1280, 1402, 1452, 1681
CviQI GTAC 2 cut(s) 554, 865
DdeI CTNAG 2 cut(s) 861, 1073
EaeI YGGCCR 3 cut(s) 906, 1261, 1609
EagI CGGCCG 1 cut(s) 1261
Eam1104I CTCTTC 2 cut(s) 528, 1623
EarI CTCTTC 2 cut(s) 528, 1623
EclXI CGGCCG 1 cut(s) 1261
Eco130I CCWWGG 3 cut(s) 1161, 1451, 1645
Eco31I GGTCTC 1 cut(s) 1578
Eco52I CGGCCG 1 cut(s) 1261
EcoRII CCWGG 3 cut(s) 20, 378, 937
EcoT14I CCWWGG 3 cut(s) 1161, 1451, 1645
ErhI CCWWGG 3 cut(s) 1161, 1451, 1645
FaeI CATG 8 cut(s) 185, 278, 347, 1192, 1283, 1405, 1455, 1684
FatI CATG 8 cut(s) 181, 274, 343, 1188, 1279, 1401, 1451, 1680
FauI CCCGC 3 cut(s) 157, 250, 1604
FblI GTMKAC 1 cut(s) 890
Fnu4HI GCNGC 2 cut(s) 1128, 1612
FokI GGATG 5 cut(s) 137, 468, 631, 1117, 1434
Fsp4HI GCNGC 2 cut(s) 1128, 1612
FspBI CTAG 5 cut(s) 54, 222, 315, 962, 1661
GluI GCNGC 2 cut(s) 1128, 1612
GsuI CTGGAG 3 cut(s) 420, 822, 1467
HaeIII GGCC 3 cut(s) 908, 1263, 1611
HapII CCGG 5 cut(s) 451, 1039, 1078, 1141, 1264
Hin1II CATG 8 cut(s) 185, 278, 347, 1192, 1283, 1405, 1455, 1684
HincII GTYRAC 3 cut(s) 64, 955, 1036
HindII GTYRAC 3 cut(s) 64, 955, 1036
HindIII AAGCTT 1 cut(s) 1551
HinfI GANTC 4 cut(s) 547, 997, 1250, 1405
HpaII CCGG 5 cut(s) 451, 1039, 1078, 1141, 1264
HphI GGTGA 7 cut(s) 692, 953, 991, 1216, 1307, 1553, 1661
Hpy188I TCNGA 5 cut(s) 112, 340, 990, 1085, 1225
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 3 cut(s) 94, 415, 1610
HpyCH4III ACNGT 7 cut(s) 199, 292, 325, 577, 584, 704, 1058
HpyCH4V TGCA 8 cut(s) 469, 776, 1108, 1135, 1316, 1401, 1539, 1557
HpyF10VI GCNNNNNNNGC 5 cut(s) 91, 1001, 1329, 1531, 1550
HpyF3I CTNAG 2 cut(s) 861, 1073
Hsp92II CATG 8 cut(s) 185, 278, 347, 1192, 1283, 1405, 1455, 1684
LmnI GCTCC 2 cut(s) 841, 1124
Lsp1109I GCAGC 1 cut(s) 1139
LweI GCATC 8 cut(s) 14, 72, 81, 609, 702, 1095, 1371, 1526
MaeI CTAG 5 cut(s) 54, 222, 315, 962, 1661
MaeIII GTNAC 5 cut(s) 440, 456, 698, 704, 1240
MboII GAAGA 4 cut(s) 545, 1249, 1610, 1677
MflI RGATCY 3 cut(s) 654, 1157, 1495
MhlI GDGCHC 2 cut(s) 667, 838
MlyI GAGTC 2 cut(s) 1006, 1244
MmeI TCCRAC 5 cut(s) 90, 331, 456, 968, 1403
MroXI GAANNNNTTC 3 cut(s) 35, 564, 915
MseI TTAA 5 cut(s) 626, 636, 975, 1425, 1632
MslI CAYNNNNRTG 4 cut(s) 123, 977, 1113, 1174
MspA1I CMGCKG 2 cut(s) 616, 751
MspI CCGG 5 cut(s) 451, 1039, 1078, 1141, 1264
MspR9I CCNGG 6 cut(s) 22, 380, 452, 939, 1142, 1265
Mva1269I GAATGC 1 cut(s) 1557
MvaI CCWGG 3 cut(s) 22, 380, 939
MwoI GCNNNNNNNGC 5 cut(s) 91, 1001, 1329, 1531, 1550
NciI CCSGG 3 cut(s) 452, 1142, 1265
NcoI CCATGG 1 cut(s) 1451
NlaIII CATG 8 cut(s) 185, 278, 347, 1192, 1283, 1405, 1455, 1684
NlaIV GGNNCC 2 cut(s) 856, 1159
NmeAIII GCCGAG 1 cut(s) 1299
NmuCI GTSAC 2 cut(s) 698, 704
NspI RCATGY 4 cut(s) 185, 278, 347, 1684
OliI CACNNNNGTG 1 cut(s) 1113
PciI ACATGT 4 cut(s) 181, 274, 343, 1680
PctI GAATGC 1 cut(s) 1557
PdmI GAANNNNTTC 3 cut(s) 35, 564, 915
PfeI GAWTC 2 cut(s) 547, 1405
PinAI ACCGGT 1 cut(s) 1038
PkrI GCNGC 2 cut(s) 1129, 1613
PleI GAGTC 2 cut(s) 1005, 1244
PpsI GAGTC 2 cut(s) 1005, 1244
PscI ACATGT 4 cut(s) 181, 274, 343, 1680
Psp6I CCWGG 3 cut(s) 20, 378, 937
PspGI CCWGG 3 cut(s) 20, 378, 937
PspN4I GGNNCC 2 cut(s) 856, 1159
PstNI CAGNNNCTG 1 cut(s) 931
PsuI RGATCY 3 cut(s) 654, 1157, 1495
PvuII CAGCTG 1 cut(s) 751
RsaI GTAC 2 cut(s) 555, 866
RsaNI GTAC 2 cut(s) 554, 865
RseI CAYNNNNRTG 4 cut(s) 123, 977, 1113, 1174
SaqAI TTAA 5 cut(s) 626, 636, 975, 1425, 1632
SatI GCNGC 2 cut(s) 1128, 1612
SchI GAGTC 2 cut(s) 1006, 1244
ScrFI CCNGG 6 cut(s) 22, 380, 452, 939, 1142, 1265
SduI GDGCHC 2 cut(s) 667, 838
SfaNI GCATC 8 cut(s) 14, 72, 81, 609, 702, 1095, 1371, 1526
SfcI CTRYAG 3 cut(s) 522, 598, 891
SmiMI CAYNNNNRTG 4 cut(s) 123, 977, 1113, 1174
SmlI CTYRAG 2 cut(s) 86, 820
SmoI CTYRAG 2 cut(s) 86, 820
SpeI ACTAGT 1 cut(s) 961
SsiI CCGC 9 cut(s) 164, 170, 204, 257, 297, 616, 1113, 1597, 1612
SspMI CTAG 5 cut(s) 54, 222, 315, 962, 1661
StyD4I CCNGG 6 cut(s) 20, 378, 450, 937, 1140, 1263
StyI CCWWGG 3 cut(s) 1161, 1451, 1645
TaaI ACNGT 7 cut(s) 199, 292, 325, 577, 584, 704, 1058
TaqI TCGA 4 cut(s) 208, 301, 1006, 1300
TatI WGTACW 1 cut(s) 864
TauI GCSGC 1 cut(s) 1614
TfiI GAWTC 2 cut(s) 547, 1405
Tru1I TTAA 5 cut(s) 626, 636, 975, 1425, 1632
Tru9I TTAA 5 cut(s) 626, 636, 975, 1425, 1632
TscAI CASTG 5 cut(s) 330, 865, 1063, 1137, 1546
TseFI GTSAC 2 cut(s) 698, 704
TseI GCWGC 1 cut(s) 1127
Tsp45I GTSAC 2 cut(s) 698, 704
TspDTI ATGAA 2 cut(s) 1418, 1590
TspRI CASTG 5 cut(s) 330, 865, 1063, 1137, 1546
XapI RAATTY 3 cut(s) 560, 721, 1421
XbaI TCTAGA 2 cut(s) 221, 314
XceI RCATGY 4 cut(s) 185, 278, 347, 1684
XmiI GTMKAC 1 cut(s) 890
XmnI GAANNNNTTC 3 cut(s) 35, 564, 915
XspI CTAG 5 cut(s) 54, 222, 315, 962, 1661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.