Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002559

Physical Location & Seq

Genomic Coordinates Forward (+)

16657691 .. 16658825

Gene Structure 1135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0195000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGCAGCGACGTGGCAGGGCCCTTTGCTCTCGGTGCCACTTATGCACGGTGGCGACAGAATCGATGCACCACCTTTTTGTGAACTGTTCGGCAGTTGCTGGCATATGGGATTGGATCTTCCCACTTTTCAGGCTTCACTTTAATCCAACCTATGAGACCAGTGAGTTTTTTCAGGAGAATTTAATTTCTAATTTCTCTTTCTCCACTAAGCTGCTATGGTTCTTATCAGTTTGCAATGTTTTTTGGTGCGTCTGGACTGAGAGAAATAGTCTAAAGCATGATGGGGGGGTTTTTGAGCCCTATAGGTTTAAACAAAAGGTGACCCTTTCAATTAGTGAATTTGCTAGTTTGATCTTTAGTTCATCCTCTGCTCCACAATCTGTTCCAATTTTTAGGCTTTTGGGTTTGTCTCAATTGCGACCTACAGCTCCGAGAATTATCCAGGTAATATGGTACCCTCCTCCTCCTCTTTGGGTTAAAGTAAATACAGATGGATCATACCATGATCAGCTTCAGGCAGGGTGTGGTGGTGTTTTTAGAGGTAGTGAGGCCTCCTTTTTAGGTGCTTTTACTAAAAAGGTAGTTGTCCCTTGTGCACTTGATGCGGAGTTGATTGCTGTAATTGAGGCAATTCGCCTTGCTTGTTTAAAGGGGTGGTTGAATTTGTGGGTGGAGGTGGATTCTTTGATTCTGCTCAGTTTTATTAATGATCCTCTTAAGGTCCCTTGGCGTCTGCGCACACAATGGAAGAACTGTTTGCATATGTCTCGACAGTTGAATATTCATTTTTCACACATATATAGGGAGGGGAATTCAGTGGCTGATAAACTTGCTACTTTTGGTGCTTTGCATGGAGATTCTGTCTGGTGGGATGTGATGCCTCAATTCTTGCATTTGGCTCTGGGTGGTGATTTCTCTGGTCGCCCATCCTATAGATTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

314

Amino Acids

35.85

Weight (kDa)

8.82

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	1 - 36	6.2e-06	zinc-binding in reverse transcriptase
RVT_3	PF13456	162 - 280	1.9e-18	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G57870 AT1G57870 AT1G57870 AT1G57870
fragaria_vesca	FvH4_5g28620 FvH4_5g28620 FvH4_5g28620 FvH4_5g28620 FvH4_5g28620 FvH4_5g28620
malus_domestica	MD08G1243600.v1.1 MD15G1437800.v1.1
prunus_persica	Prupe.1G580900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0220561
rosa_laevigata	RLG00000002217
rosa_multiflora	Rmu_sc0025016.1_g000001 Rmu_ssc0000189.1_g000031
rosa_roxburghii	Rroxscaffold_3G00239300
rosa_rugosa	Rorug07G0194800 Rorug07G0194800 Rorug07G0194900 Rorug07G0195000
rosa_samantha	Rh2AG332300 Rh7AG336000 Rh7BG327100 Rh7CG353700 Rh7DG332300
rosa_wichuraiana	Rw0G017340 Rw7G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	737
Acc65I	GGTACC	1 cut(s)	453
AccB1I	GGYRCC	2 cut(s)	33, 453
AciI	CCGC	1 cut(s)	605
AclWI	GGATC	3 cut(s)	122, 502, 704
AcsI	RAATTY	4 cut(s)	178, 338, 661, 811
AcuI	CTGAAG	1 cut(s)	497
AcyI	GRCGYC	1 cut(s)	730
AfaI	GTAC	1 cut(s)	455
AflII	CTTAAG	1 cut(s)	716
AgsI	TTSAA	3 cut(s)	330, 661, 778
AjiI	CACGTC	1 cut(s)	11
AjnI	CCWGG	1 cut(s)	441
AluBI	AGCT	3 cut(s)	211, 428, 511
AluI	AGCT	3 cut(s)	211, 428, 511
Alw21I	GWGCWC	1 cut(s)	598
Alw26I	GTCTC	3 cut(s)	149, 414, 771
Alw44I	GTGCAC	1 cut(s)	594
AlwI	GGATC	3 cut(s)	122, 502, 704
AlwNI	CAGNNNCTG	2 cut(s)	98, 821
AoxI	GGCC	2 cut(s)	18, 549
ApaI	GGGCCC	1 cut(s)	22
ApaLI	GTGCAC	1 cut(s)	594
ApeKI	GCWGC	2 cut(s)	4, 211
ApoI	RAATTY	4 cut(s)	178, 338, 661, 811
AseI	ATTAAT	1 cut(s)	705
Asp718I	GGTACC	1 cut(s)	453
AspLEI	GCGC	1 cut(s)	738
AspS9I	GGNCC	3 cut(s)	18, 19, 721
AsuHPI	GGTGA	2 cut(s)	331, 920
AvaII	GGWCC	1 cut(s)	721
BaeGI	GKGCMC	2 cut(s)	22, 598
BanI	GGYRCC	2 cut(s)	33, 453
BanII	GRGCYC	2 cut(s)	22, 300
Bbv12I	GWGCWC	1 cut(s)	598
BbvI	GCAGC	2 cut(s)	16, 198
BccI	CCATC	3 cut(s)	275, 485, 934
BcgI	CGANNNNNNTGC	2 cut(s)	749, 783
BciT130I	CCWGG	1 cut(s)	443
BclI	TGATCA	1 cut(s)	505
BcoDI	GTCTC	3 cut(s)	149, 414, 771
BfaI	CTAG	1 cut(s)	345
BfmI	CTRYAG	3 cut(s)	301, 423, 931
BfrI	CTTAAG	1 cut(s)	716
BisI	GCNGC	2 cut(s)	5, 212
BlsI	GCNGC	2 cut(s)	6, 213
Bme1390I	CCNGG	1 cut(s)	443
Bme18I	GGWCC	1 cut(s)	721
BmgBI	CACGTC	1 cut(s)	11
BmgT120I	GGNCC	3 cut(s)	18, 19, 721
BmiI	GGNNCC	4 cut(s)	20, 35, 455, 723
BmrFI	CCNGG	1 cut(s)	443
BmsI	GCATC	3 cut(s)	54, 592, 867
Bsa29I	ATCGAT	1 cut(s)	62
BsaHI	GRCGYC	1 cut(s)	730
BsaI	GGTCTC	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	725
BsaXI	ACNNNNNCTCC	2 cut(s)	846, 876
Bse1I	ACTGG	1 cut(s)	159
Bse3DI	GCAATG	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	443
BseCI	ATCGAT	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	725
BseGI	GGATG	3 cut(s)	362, 877, 926
BseMI	GCAATG	1 cut(s)	241
BseMII	CTCAG	2 cut(s)	249, 709
BseNI	ACTGG	1 cut(s)	159
BseRI	GAGGAG	3 cut(s)	450, 453, 456
BseSI	GKGCMC	2 cut(s)	22, 598
BseXI	GCAGC	2 cut(s)	16, 198
BshFI	GGCC	2 cut(s)	20, 551
BshNI	GGYRCC	2 cut(s)	33, 453
BshVI	ATCGAT	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	598
BslFI	GGGAC	2 cut(s)	572, 707
BsmAI	GTCTC	3 cut(s)	149, 414, 771
BsmFI	GGGAC	2 cut(s)	572, 707
BsnI	GGCC	2 cut(s)	20, 551
Bso31I	GGTCTC	1 cut(s)	149
Bsp120I	GGGCCC	1 cut(s)	18
Bsp1286I	GDGCHC	3 cut(s)	22, 300, 598
Bsp143I	GATC	5 cut(s)	114, 351, 494, 505, 709
BspACI	CCGC	1 cut(s)	605
BspANI	GGCC	2 cut(s)	20, 551
BspCNI	CTCAG	2 cut(s)	250, 708
BspDI	ATCGAT	1 cut(s)	62
BspLI	GGNNCC	4 cut(s)	20, 35, 455, 723
BspPI	GGATC	3 cut(s)	122, 502, 704
BspT107I	GGYRCC	2 cut(s)	33, 453
BspTI	CTTAAG	1 cut(s)	716
BspTNI	GGTCTC	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	159
BssECI	CCNNGG	1 cut(s)	725
BssMI	GATC	5 cut(s)	114, 351, 494, 505, 709
BssNI	GRCGYC	1 cut(s)	730
BssT1I	CCWWGG	1 cut(s)	725
Bst2UI	CCWGG	1 cut(s)	443
Bst4CI	ACNGT	4 cut(s)	49, 86, 755, 774
BstACI	GRCGYC	1 cut(s)	730
BstAFI	CTTAAG	1 cut(s)	716
BstAPI	GCANNNNNTGC	1 cut(s)	602
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	3 cut(s)	207, 258, 695
BstEII	GGTNACC	1 cut(s)	319
BstF5I	GGATG	3 cut(s)	362, 877, 926
BstHHI	GCGC	1 cut(s)	738
BstKTI	GATC	5 cut(s)	117, 354, 497, 508, 712
BstMAI	GTCTC	3 cut(s)	149, 414, 771
BstMBI	GATC	5 cut(s)	114, 351, 494, 505, 709
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 42, 602
BstNI	CCWGG	1 cut(s)	443
BstPI	GGTNACC	1 cut(s)	319
BstSCI	CCNGG	1 cut(s)	441
BstSFI	CTRYAG	3 cut(s)	301, 423, 931
BstSLI	GKGCMC	2 cut(s)	22, 598
BstV1I	GCAGC	2 cut(s)	16, 198
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
Bsu15I	ATCGAT	1 cut(s)	62
BsuRI	GGCC	2 cut(s)	20, 551
BsuTUI	ATCGAT	1 cut(s)	62
BtrI	CACGTC	1 cut(s)	11
BtsCI	GGATG	3 cut(s)	362, 877, 926
BtsIMutI	CAGTG	2 cut(s)	166, 822
Cac8I	GCNNGC	1 cut(s)	100
CaiI	CAGNNNCTG	2 cut(s)	98, 821
CfoI	GCGC	1 cut(s)	738
Cfr13I	GGNCC	3 cut(s)	18, 19, 721
ClaI	ATCGAT	1 cut(s)	62
CseI	GACGC	2 cut(s)	238, 719
Csp6I	GTAC	1 cut(s)	454
CviAII	CATG	3 cut(s)	278, 503, 851
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	3 cut(s)	207, 258, 695
DpnI	GATC	5 cut(s)	116, 353, 496, 507, 711
DpnII	GATC	5 cut(s)	114, 351, 494, 505, 709
DraI	TTTAAA	2 cut(s)	310, 648
Eco130I	CCWWGG	1 cut(s)	725
Eco147I	AGGCCT	1 cut(s)	551
Eco24I	GRGCYC	2 cut(s)	22, 300
Eco31I	GGTCTC	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	721
Eco57I	CTGAAG	1 cut(s)	497
Eco91I	GGTNACC	1 cut(s)	319
EcoO109I	RGGNCCY	3 cut(s)	18, 19, 721
EcoO65I	GGTNACC	1 cut(s)	319
EcoRI	GAATTC	1 cut(s)	811
EcoRII	CCWGG	1 cut(s)	441
EcoT14I	CCWWGG	1 cut(s)	725
EcoT38I	GRGCYC	2 cut(s)	22, 300
ErhI	CCWWGG	1 cut(s)	725
FaeI	CATG	3 cut(s)	281, 506, 854
FaqI	GGGAC	2 cut(s)	572, 707
FatI	CATG	3 cut(s)	277, 502, 850
FauNDI	CATATG	2 cut(s)	104, 762
FbaI	TGATCA	1 cut(s)	505
Fnu4HI	GCNGC	2 cut(s)	5, 212
FokI	GGATG	3 cut(s)	349, 884, 913
FriOI	GRGCYC	2 cut(s)	22, 300
Fsp4HI	GCNGC	2 cut(s)	5, 212
FspBI	CTAG	1 cut(s)	345
FspI	TGCGCA	1 cut(s)	737
GlaI	GCGC	1 cut(s)	737
GluI	GCNGC	2 cut(s)	5, 212
HaeIII	GGCC	2 cut(s)	20, 551
HgaI	GACGC	2 cut(s)	238, 719
HhaI	GCGC	1 cut(s)	738
Hin1I	GRCGYC	1 cut(s)	730
Hin1II	CATG	3 cut(s)	281, 506, 854
Hin6I	GCGC	1 cut(s)	736
HinP1I	GCGC	1 cut(s)	736
HinfI	GANTC	4 cut(s)	59, 680, 688, 857
HphI	GGTGA	2 cut(s)	331, 920
Hpy166II	GTNNAC	2 cut(s)	82, 596
Hpy188I	TCNGA	1 cut(s)	432
Hpy188III	TCNNGA	3 cut(s)	173, 253, 768
Hpy8I	GTNNAC	2 cut(s)	82, 596
Hpy99I	CGWCG	1 cut(s)	12
HpyCH4III	ACNGT	4 cut(s)	49, 86, 755, 774
HpyCH4IV	ACGT	1 cut(s)	10
HpyCH4V	TGCA	8 cut(s)	4, 45, 67, 234, 596, 760, 850, 892
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 42, 602
HpyF3I	CTNAG	3 cut(s)	207, 258, 695
HpySE526I	ACGT	1 cut(s)	10
Hsp92I	GRCGYC	1 cut(s)	730
Hsp92II	CATG	3 cut(s)	281, 506, 854
HspAI	GCGC	1 cut(s)	736
KpnI	GGTACC	1 cut(s)	457
Ksp22I	TGATCA	1 cut(s)	505
Kzo9I	GATC	5 cut(s)	114, 351, 494, 505, 709
LmnI	GCTCC	2 cut(s)	376, 433
Lsp1109I	GCAGC	2 cut(s)	16, 198
LweI	GCATC	3 cut(s)	54, 592, 867
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	1 cut(s)	10
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	5 cut(s)	116, 353, 496, 507, 711
MboI	GATC	5 cut(s)	114, 351, 494, 505, 709
MboII	GAAGA	2 cut(s)	109, 760
MfeI	CAATTG	1 cut(s)	413
MflI	RGATCY	1 cut(s)	114
MhlI	GDGCHC	3 cut(s)	22, 300, 598
MmeI	TCCRAC	1 cut(s)	170
MseI	TTAA	8 cut(s)	141, 182, 309, 477, 647, 705, 717, 943
MspCI	CTTAAG	1 cut(s)	716
MspR9I	CCNGG	1 cut(s)	443
MssI	GTTTAAAC	1 cut(s)	310
MunI	CAATTG	1 cut(s)	413
MvaI	CCWGG	1 cut(s)	443
MwoI	GCNNNNNNNGC	3 cut(s)	33, 42, 602
NdeI	CATATG	2 cut(s)	104, 762
NdeII	GATC	5 cut(s)	114, 351, 494, 505, 709
NlaIII	CATG	3 cut(s)	281, 506, 854
NlaIV	GGNNCC	4 cut(s)	20, 35, 455, 723
NmuCI	GTSAC	1 cut(s)	319
NsbI	TGCGCA	1 cut(s)	737
PceI	AGGCCT	1 cut(s)	551
PfeI	GAWTC	4 cut(s)	59, 680, 688, 857
PkrI	GCNGC	2 cut(s)	6, 213
PmeI	GTTTAAAC	1 cut(s)	310
PpuMI	RGGWCCY	1 cut(s)	721
PshBI	ATTAAT	1 cut(s)	705
Psp5II	RGGWCCY	1 cut(s)	721
Psp6I	CCWGG	1 cut(s)	441
PspEI	GGTNACC	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	441
PspN4I	GGNNCC	4 cut(s)	20, 35, 455, 723
PspOMI	GGGCCC	1 cut(s)	18
PspPI	GGNCC	3 cut(s)	18, 19, 721
PspPPI	RGGWCCY	1 cut(s)	721
PstNI	CAGNNNCTG	2 cut(s)	98, 821
PsuI	RGATCY	1 cut(s)	114
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
SaqAI	TTAA	8 cut(s)	141, 182, 309, 477, 647, 705, 717, 943
SatI	GCNGC	2 cut(s)	5, 212
Sau3AI	GATC	5 cut(s)	114, 351, 494, 505, 709
Sau96I	GGNCC	3 cut(s)	18, 19, 721
ScrFI	CCNGG	1 cut(s)	443
SduI	GDGCHC	3 cut(s)	22, 300, 598
SfaNI	GCATC	3 cut(s)	54, 592, 867
SfcI	CTRYAG	3 cut(s)	301, 423, 931
SinI	GGWCC	1 cut(s)	721
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
SseBI	AGGCCT	1 cut(s)	551
SsiI	CCGC	1 cut(s)	605
SspI	AATATT	1 cut(s)	781
SspMI	CTAG	1 cut(s)	345
StuI	AGGCCT	1 cut(s)	551
StyD4I	CCNGG	1 cut(s)	441
StyI	CCWWGG	1 cut(s)	725
TaaI	ACNGT	4 cut(s)	49, 86, 755, 774
TaiI	ACGT	1 cut(s)	13
TaqI	TCGA	2 cut(s)	62, 769
TfiI	GAWTC	4 cut(s)	59, 680, 688, 857
Tru1I	TTAA	8 cut(s)	141, 182, 309, 477, 647, 705, 717, 943
Tru9I	TTAA	8 cut(s)	141, 182, 309, 477, 647, 705, 717, 943
TscAI	CASTG	2 cut(s)	166, 822
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	2 cut(s)	4, 211
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	2 cut(s)	351, 773
TspRI	CASTG	2 cut(s)	166, 822
Vha464I	CTTAAG	1 cut(s)	716
VneI	GTGCAC	1 cut(s)	594
VpaK11BI	GGWCC	1 cut(s)	721
VspI	ATTAAT	1 cut(s)	705
XapI	RAATTY	4 cut(s)	178, 338, 661, 811
XspI	CTAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.