Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00774

Orthogroup ID

OG0002559

Physical Location & Seq

Genomic Coordinates Reverse (-)

3612 .. 7441

Gene Structure 3830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G017340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGGAAAGAGAGGTGAGTGGGTGTCGACCAAGGGAAATTTAGTGAATTACTTGCCCCAAGATGAGGCAGTTGCCGCTGGCCTCGGCGCCGACGAAGGTGGATTGGACGCCGTGGAGTCTCAGAGAGTCGATAGTGAACCTGATATAATTGATGGTGCGGGTGCTGAAACAGGACATGTAATACGCACAACTGTTGGCAGTCGAGGTGGTCAATCTAGACAGACAGTGAGTTACATTTTAGAACATGTGGTTGGAACTGGCTCTTTTGGGGTTGTTTTCCAGGCGAAATGTAGAGAAACTGGAGAGATTGTTGCTATCAGGAAGGTTCTCCAAGACAAGCGTTACAAGAACCGGGAGTTACAGATTATGCAAATGTTGGATCATCTAAACATTGTTTCCCTAAAACATTGCTTCTTTTCAACTATAGACAAAGAAGAGATCTGTCGGGCACTTGCTTATATACATAATGGCATTGGCATCTGTCACCGTGACATCAAGCCTCAAAATTTACTTGTAAATCCACACACACATAAGCTGAAACTTTGTGATTTTGGGAGTGCAAAAGTCTTGACTACTTCTAATTTTGCTTATTTATGTGAGTTTTTCTATTTGGCTGAGATTGATTTTGTTTTGTGTTTTCCTTTT

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

215

Amino Acids

23.85

Weight (kDa)

6.24

Isoelectric Point (pI)

28.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	79 - 138	1e-09	Protein kinase domain
Pkinase	PF00069	146 - 194	1.8e-14	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G57870 AT1G57870 AT1G57870 AT1G57870
fragaria_vesca	FvH4_5g28620 FvH4_5g28620 FvH4_5g28620 FvH4_5g28620 FvH4_5g28620 FvH4_5g28620
malus_domestica	MD08G1243600.v1.1 MD15G1437800.v1.1
prunus_persica	Prupe.1G580900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0220561
rosa_laevigata	RLG00000002217
rosa_multiflora	Rmu_sc0025016.1_g000001 Rmu_ssc0000189.1_g000031
rosa_roxburghii	Rroxscaffold_3G00239300
rosa_rugosa	Rorug07G0194800 Rorug07G0194800 Rorug07G0194900 Rorug07G0195000
rosa_samantha	Rh2AG332300 Rh7AG336000 Rh7BG327100 Rh7CG353700 Rh7DG332300
rosa_wichuraiana	Rw0G017340 Rw7G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	86
AccI	GTMKAC	1 cut(s)	26
AciI	CCGC	2 cut(s)	75, 158
AclWI	GGATC	1 cut(s)	387
AcsI	RAATTY	2 cut(s)	37, 505
AcyI	GRCGYC	2 cut(s)	87, 108
AfiI	CCNNNNNNNGG	1 cut(s)	64
AflIII	ACRYGT	2 cut(s)	175, 244
AgsI	TTSAA	1 cut(s)	420
AjnI	CCWGG	1 cut(s)	279
AjuI	GAANNNNNNNTTGG	2 cut(s)	234, 266
AluBI	AGCT	1 cut(s)	535
AluI	AGCT	1 cut(s)	535
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	1 cut(s)	387
AoxI	GGCC	1 cut(s)	79
ApoI	RAATTY	2 cut(s)	37, 505
AspLEI	GCGC	1 cut(s)	89
AsuC2I	CCSGG	1 cut(s)	353
AsuHPI	GGTGA	2 cut(s)	26, 476
BaeGI	GKGCMC	1 cut(s)	451
BanI	GGYRCC	1 cut(s)	86
BccI	CCATC	1 cut(s)	146
BceAI	ACGGC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	281
BcnI	CCSGG	1 cut(s)	353
BcoDI	GTCTC	1 cut(s)	123
BfaI	CTAG	1 cut(s)	216
BfmI	CTRYAG	1 cut(s)	423
BfoI	RGCGCY	1 cut(s)	90
BglII	AGATCT	1 cut(s)	438
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	2 cut(s)	281, 353
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	2 cut(s)	281, 353
BmsI	GCATC	1 cut(s)	486
BpmI	CTGGAG	1 cut(s)	321
BpuMI	CCSGG	1 cut(s)	353
BsaHI	GRCGYC	2 cut(s)	87, 108
BsaJI	CCNNGG	3 cut(s)	30, 82, 111
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse1I	ACTGG	2 cut(s)	262, 304
Bse3DI	GCAATG	1 cut(s)	406
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	3 cut(s)	30, 82, 111
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMI	GCAATG	1 cut(s)	406
BseMII	CTCAG	2 cut(s)	134, 606
BseNI	ACTGG	2 cut(s)	262, 304
BseSI	GKGCMC	1 cut(s)	451
BshFI	GGCC	1 cut(s)	81
BshNI	GGYRCC	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	352
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	1 cut(s)	123
BsnI	GGCC	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	451
Bsp143I	GATC	2 cut(s)	379, 438
BspACI	CCGC	2 cut(s)	75, 158
BspANI	GGCC	1 cut(s)	81
BspCNI	CTCAG	2 cut(s)	133, 607
BspLI	GGNNCC	1 cut(s)	88
BspPI	GGATC	1 cut(s)	387
BspT107I	GGYRCC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	406
BsrI	ACTGG	2 cut(s)	262, 304
BssECI	CCNNGG	3 cut(s)	30, 82, 111
BssMI	GATC	2 cut(s)	379, 438
BssNI	GRCGYC	2 cut(s)	87, 108
BssT1I	CCWWGG	1 cut(s)	30
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	3 cut(s)	193, 226, 488
Bst6I	CTCTTC	1 cut(s)	429
BstACI	GRCGYC	2 cut(s)	87, 108
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	2 cut(s)	120, 615
BstDSI	CCRYGG	1 cut(s)	111
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	2 cut(s)	382, 441
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	2 cut(s)	379, 438
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNI	CCWGG	1 cut(s)	281
BstNSI	RCATGY	2 cut(s)	179, 248
BstSCI	CCNGG	2 cut(s)	279, 351
BstSFI	CTRYAG	1 cut(s)	423
BstSLI	GKGCMC	1 cut(s)	451
BstX2I	RGATCY	1 cut(s)	438
BstYI	RGATCY	1 cut(s)	438
BsuRI	GGCC	1 cut(s)	81
BtgI	CCRYGG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	1 cut(s)	79
CfoI	GCGC	1 cut(s)	89
CseI	GACGC	1 cut(s)	116
CviAII	CATG	2 cut(s)	176, 245
CviJI	RGCY	5 cut(s)	81, 261, 499, 535, 614
CviKI_1	RGCY	5 cut(s)	81, 261, 499, 535, 614
DdeI	CTNAG	2 cut(s)	120, 615
DinI	GGCGCC	1 cut(s)	88
DpnI	GATC	2 cut(s)	381, 440
DpnII	GATC	2 cut(s)	379, 438
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Eco130I	CCWWGG	1 cut(s)	30
EcoRII	CCWGG	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	30
EgeI	GGCGCC	1 cut(s)	88
EheI	GGCGCC	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	2 cut(s)	179, 248
FatI	CATG	2 cut(s)	175, 244
FauI	CCCGC	1 cut(s)	151
FblI	GTMKAC	1 cut(s)	26
Fnu4HI	GCNGC	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	75
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	1 cut(s)	75
GsuI	CTGGAG	1 cut(s)	321
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	81
HapII	CCGG	1 cut(s)	352
HgaI	GACGC	1 cut(s)	116
HhaI	GCGC	1 cut(s)	89
Hin1I	GRCGYC	2 cut(s)	87, 108
Hin1II	CATG	2 cut(s)	179, 248
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HinfI	GANTC	2 cut(s)	116, 126
HpaII	CCGG	1 cut(s)	352
HphI	GGTGA	2 cut(s)	26, 476
Hpy166II	GTNNAC	2 cut(s)	27, 137
Hpy188I	TCNGA	1 cut(s)	123
Hpy188III	TCNNGA	3 cut(s)	216, 319, 568
Hpy8I	GTNNAC	2 cut(s)	27, 137
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	89, 316
HpyCH4III	ACNGT	3 cut(s)	193, 226, 488
HpyCH4V	TGCA	2 cut(s)	370, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	2 cut(s)	120, 615
Hsp92I	GRCGYC	2 cut(s)	87, 108
Hsp92II	CATG	2 cut(s)	179, 248
HspAI	GCGC	1 cut(s)	87
KasI	GGCGCC	1 cut(s)	86
Kzo9I	GATC	2 cut(s)	379, 438
LpnPI	CCDG	9 cut(s)	63, 153, 156, 243, 266, 285, 293, 304, 365
LweI	GCATC	1 cut(s)	486
MaeI	CTAG	1 cut(s)	216
MaeIII	GTNAC	5 cut(s)	230, 341, 357, 482, 488
MalI	GATC	2 cut(s)	381, 440
MboI	GATC	2 cut(s)	379, 438
MboII	GAAGA	1 cut(s)	446
MflI	RGATCY	1 cut(s)	438
MhlI	GDGCHC	1 cut(s)	451
MluCI	AATT	5 cut(s)	37, 46, 147, 505, 580
Mly113I	GGCGCC	1 cut(s)	87
MlyI	GAGTC	2 cut(s)	125, 135
MmeI	TCCRAC	2 cut(s)	232, 357
MnlI	CCTC	5 cut(s)	5, 58, 92, 197, 510
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	1 cut(s)	352
MspR9I	CCNGG	2 cut(s)	281, 353
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	1 cut(s)	74
NarI	GGCGCC	1 cut(s)	87
NciI	CCSGG	1 cut(s)	353
NdeII	GATC	2 cut(s)	379, 438
NlaIII	CATG	2 cut(s)	179, 248
NlaIV	GGNNCC	1 cut(s)	88
NmeAIII	GCCGAG	1 cut(s)	63
NmuCI	GTSAC	2 cut(s)	482, 488
NspI	RCATGY	2 cut(s)	179, 248
PciI	ACATGT	2 cut(s)	175, 244
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PkrI	GCNGC	1 cut(s)	76
PleI	GAGTC	2 cut(s)	124, 134
PluTI	GGCGCC	1 cut(s)	90
PpsI	GAGTC	2 cut(s)	124, 134
PscI	ACATGT	2 cut(s)	175, 244
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	438
SalI	GTCGAC	1 cut(s)	25
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	2 cut(s)	379, 438
SchI	GAGTC	2 cut(s)	125, 135
ScrFI	CCNGG	2 cut(s)	281, 353
SduI	GDGCHC	1 cut(s)	451
SetI	ASST	6 cut(s)	16, 100, 142, 208, 327, 537
SfaNI	GCATC	1 cut(s)	486
SfcI	CTRYAG	1 cut(s)	423
SfoI	GGCGCC	1 cut(s)	88
Sse9I	AATT	5 cut(s)	37, 46, 147, 505, 580
SsiI	CCGC	2 cut(s)	75, 158
SspDI	GGCGCC	1 cut(s)	86
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	2 cut(s)	279, 351
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	3 cut(s)	193, 226, 488
TaqI	TCGA	3 cut(s)	26, 129, 202
TasI	AATT	5 cut(s)	37, 46, 147, 505, 580
TauI	GCSGC	1 cut(s)	77
TscAI	CASTG	1 cut(s)	231
TseFI	GTSAC	2 cut(s)	482, 488
Tsp45I	GTSAC	2 cut(s)	482, 488
TspRI	CASTG	1 cut(s)	231
XapI	RAATTY	2 cut(s)	37, 505
XbaI	TCTAGA	1 cut(s)	215
XceI	RCATGY	2 cut(s)	179, 248
XmiI	GTMKAC	1 cut(s)	26
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.