Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002559

Physical Location & Seq

Genomic Coordinates Reverse (-)

29287420 .. 29293615

Gene Structure 6196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00239300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGCATCTGCTGGCAGTTCCAGGTCTGCGAATGGCTTCAAGAGTTCGTCGTCTAGTTCGGTTGACTGGCTCGGTAGGGAGATGCTTGAGATGCGATTGAAGGACAAGTCGGATCATCATCACGATGAGGATAGAGATAGTGAACCTGATATAATTGATGGTGCCGGTGCTGAAACAGGACATGTAATACGCACAACTGTTGGCGGTCGAGGTGGTCAATCTAGACAGACAGTGAGTTATATTTCAGAACATGTGGTTGGAACTGGCTCTTTTGGGGTTGTTTTCCAGGCGAAATGTAGAGAAACTGGAGAGATTGTTGCTATCAAGAAGGTTCTCCAAGACAAGCGTTACAAGAACCGGGAGTTACAGATTATGCAAATGTTGGATCATCCAAACATTGTTTCCCTAAAACATTGCTTCTTTTCAACTACAGACAAAGAAGAGGTTTACCTGAATCTCGTACTTGAATTTGTTCCTGAAACTGTTTACCGTATCGCAAGGAACTATAGCAGGATCAACCAGCGGATGCCTTTAATATATGTTAAACTTTATACCTACCAGATCTGTCGGGCACTTGCTTATATACATAATGGCATTGGCATCTGTCACCGTGACATCAAGCCACAAAATTTACTTGTAAATCCACACACACATCAGCTGAAACTTTGTGATTTTGGGAGTGCAAAAGTCTTGGTAAAAGGAGAACCCAATGTGTCTTATATCTGCTCAAGATACTATCGTGCTCCAGAACTGATATTTGGTGCCACTGAGTACACAAGTGCTATTGATATTTGGTCTACAGGTTGTGTGATGGCTGAATTGCTTCTTGGACAGCCCCTGTTTCCTGGTGAAAGTGGAGTTGACCAACTAGTTGAGATCATTAAGGTTTTGGGAACTCCAACGAGGGAGGAGATAAAGTGCATGAATCCAAACTATACTGAATTTAAGTTCCCACAGATAAAGCCTCATCCATGGCACAAGGTATTTCAAAAACGCTTGCCCCCAGAAGCAGTAGATCTTGTTTGTAGGTTTTTTCAGTATTCGCCCAATTTGCGATGCACTGCTTTGGAAGCTTGCATTCACCCTTTCTTTGATGAATTGAGAGACCCAAATACCCGCCTTCCTAATGGCCGCCCTCTCCCTCCTCTGTTTAATTTCAAAACCCAAGAGCTGCAAGGAATTGCACCTGATATTGTCAATCGACTTATTCCAGAGCATGCCCGTAAGCAGAACTTATTTATGGCTTTGCATACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

418

Amino Acids

47.55

Weight (kDa)

8.39

Isoelectric Point (pI)

33.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	81 - 364	2e-61	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	84 - 282	1.9e-24	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G57870 AT1G57870 AT1G57870 AT1G57870
fragaria_vesca	FvH4_5g28620 FvH4_5g28620 FvH4_5g28620 FvH4_5g28620 FvH4_5g28620 FvH4_5g28620
malus_domestica	MD08G1243600.v1.1 MD15G1437800.v1.1
prunus_persica	Prupe.1G580900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0220561
rosa_laevigata	RLG00000002217
rosa_multiflora	Rmu_sc0025016.1_g000001 Rmu_ssc0000189.1_g000031
rosa_roxburghii	Rroxscaffold_3G00239300
rosa_rugosa	Rorug07G0194800 Rorug07G0194800 Rorug07G0194900 Rorug07G0195000
rosa_samantha	Rh2AG332300 Rh7AG336000 Rh7BG327100 Rh7CG353700 Rh7DG332300
rosa_wichuraiana	Rw0G017340 Rw7G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	161, 761
AccI	GTMKAC	1 cut(s)	797
AciI	CCGC	4 cut(s)	204, 523, 1117, 1132
AclWI	GGATC	3 cut(s)	120, 393, 521
AcoI	YGGCCR	1 cut(s)	1129
AcsI	RAATTY	3 cut(s)	467, 628, 941
AfaI	GTAC	2 cut(s)	462, 773
AflIII	ACRYGT	2 cut(s)	181, 250
AgsI	TTSAA	6 cut(s)	40, 100, 426, 467, 989, 1159
AhlI	ACTAGT	1 cut(s)	868
AjnI	CCWGG	3 cut(s)	20, 285, 844
AjuI	GAANNNNNNNTTGG	8 cut(s)	240, 272, 385, 417, 741, 773, 810, 842
AluBI	AGCT	3 cut(s)	658, 1073, 1171
AluI	AGCT	3 cut(s)	658, 1073, 1171
Alw21I	GWGCWC	1 cut(s)	745
Alw26I	GTCTC	1 cut(s)	1098
AlwI	GGATC	3 cut(s)	120, 393, 521
AlwNI	CAGNNNCTG	1 cut(s)	838
AoxI	GGCC	1 cut(s)	1129
ApeKI	GCWGC	1 cut(s)	1171
ApoI	RAATTY	3 cut(s)	467, 628, 941
Asp700I	GAANNNNTTC	3 cut(s)	35, 471, 822
AsuC2I	CCSGG	1 cut(s)	359
AsuHPI	GGTGA	3 cut(s)	599, 860, 1073
BaeGI	GKGCMC	1 cut(s)	574
BaeI	ACNNNNGTAYC	2 cut(s)	724, 757
BanI	GGYRCC	2 cut(s)	161, 761
Bbv12I	GWGCWC	1 cut(s)	745
BbvI	GCAGC	1 cut(s)	1158
BccI	CCATC	2 cut(s)	152, 805
BciT130I	CCWGG	3 cut(s)	22, 287, 846
BcnI	CCSGG	1 cut(s)	359
BcoDI	GTCTC	1 cut(s)	1098
BcuI	ACTAGT	1 cut(s)	868
BfaI	CTAG	4 cut(s)	54, 222, 869, 1255
BfmI	CTRYAG	3 cut(s)	429, 505, 798
BglII	AGATCT	2 cut(s)	561, 1015
BisI	GCNGC	2 cut(s)	1132, 1172
BlsI	GCNGC	2 cut(s)	1133, 1173
Bme1390I	CCNGG	4 cut(s)	22, 287, 359, 846
BmiI	GGNNCC	2 cut(s)	163, 763
BmrFI	CCNGG	4 cut(s)	22, 287, 359, 846
BmsI	GCATC	6 cut(s)	14, 72, 81, 516, 609, 1046
BpmI	CTGGAG	2 cut(s)	327, 729
BpuEI	CTTGAG	2 cut(s)	107, 712
BpuMI	CCSGG	1 cut(s)	359
BsaBI	GATNNNNATC	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	1098
BsaJI	CCNNGG	1 cut(s)	971
BsaXI	ACNNNNNCTCC	4 cut(s)	300, 330, 902, 932
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	3 cut(s)	71, 268, 310
Bse3DI	GCAATG	1 cut(s)	412
Bse8I	GATNNNNATC	1 cut(s)	117
BseBI	CCWGG	3 cut(s)	22, 287, 846
BseDI	CCNNGG	1 cut(s)	971
BseGI	GGATG	3 cut(s)	388, 531, 967
BseJI	GATNNNNATC	1 cut(s)	117
BseMI	GCAATG	1 cut(s)	412
BseMII	CTCAG	1 cut(s)	759
BseNI	ACTGG	3 cut(s)	71, 268, 310
BseRI	GAGGAG	2 cut(s)	923, 1134
BseSI	GKGCMC	1 cut(s)	574
BseXI	GCAGC	1 cut(s)	1158
Bsh1285I	CGRYCG	1 cut(s)	208
BshFI	GGCC	1 cut(s)	1131
BshNI	GGYRCC	2 cut(s)	161, 761
BsiEI	CGRYCG	1 cut(s)	208
BsiHKAI	GWGCWC	1 cut(s)	745
BsiSI	CCGG	2 cut(s)	165, 358
BsmAI	GTCTC	1 cut(s)	1098
BsmI	GAATGC	1 cut(s)	1077
BsnI	GGCC	1 cut(s)	1131
Bso31I	GGTCTC	1 cut(s)	1098
Bsp1286I	GDGCHC	2 cut(s)	574, 745
Bsp143I	GATC	6 cut(s)	112, 385, 513, 561, 876, 1015
Bsp19I	CCATGG	1 cut(s)	971
BspACI	CCGC	4 cut(s)	204, 523, 1117, 1132
BspANI	GGCC	1 cut(s)	1131
BspCNI	CTCAG	1 cut(s)	760
BspLI	GGNNCC	2 cut(s)	163, 763
BspPI	GGATC	3 cut(s)	120, 393, 521
BspT107I	GGYRCC	2 cut(s)	161, 761
BspTNI	GGTCTC	1 cut(s)	1098
BsrDI	GCAATG	1 cut(s)	412
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	3 cut(s)	71, 268, 310
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	971
BssMI	GATC	6 cut(s)	112, 385, 513, 561, 876, 1015
BssT1I	CCWWGG	1 cut(s)	971
Bst2UI	CCWGG	3 cut(s)	22, 287, 846
Bst4CI	ACNGT	5 cut(s)	199, 232, 484, 491, 611
Bst6I	CTCTTC	1 cut(s)	435
BstC8I	GCNNGC	4 cut(s)	13, 998, 1075, 1218
BstDEI	CTNAG	1 cut(s)	768
BstDSI	CCRYGG	1 cut(s)	971
BstF5I	GGATG	3 cut(s)	388, 531, 967
BstKTI	GATC	6 cut(s)	115, 388, 516, 564, 879, 1018
BstMAI	GTCTC	1 cut(s)	1098
BstMBI	GATC	6 cut(s)	112, 385, 513, 561, 876, 1015
BstMCI	CGRYCG	1 cut(s)	208
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 1051, 1070
BstNI	CCWGG	3 cut(s)	22, 287, 846
BstNSI	RCATGY	3 cut(s)	185, 254, 1220
BstSCI	CCNGG	4 cut(s)	20, 285, 357, 844
BstSFI	CTRYAG	3 cut(s)	429, 505, 798
BstSLI	GKGCMC	1 cut(s)	574
BstV1I	GCAGC	1 cut(s)	1158
BstX2I	RGATCY	2 cut(s)	561, 1015
BstYI	RGATCY	2 cut(s)	561, 1015
BsuRI	GGCC	1 cut(s)	1131
BtgI	CCRYGG	1 cut(s)	971
BtgZI	GCGATG	1 cut(s)	1069
BtsCI	GGATG	3 cut(s)	388, 531, 967
BtsI	GCAGTG	1 cut(s)	1059
BtsIMutI	CAGTG	3 cut(s)	237, 765, 1059
Cac8I	GCNNGC	4 cut(s)	13, 998, 1075, 1218
CaiI	CAGNNNCTG	1 cut(s)	838
Cfr10I	RCCGGY	1 cut(s)	164
Csp6I	GTAC	2 cut(s)	461, 772
CviAII	CATG	5 cut(s)	182, 251, 922, 972, 1217
CviQI	GTAC	2 cut(s)	461, 772
DdeI	CTNAG	1 cut(s)	768
DpnI	GATC	6 cut(s)	114, 387, 515, 563, 878, 1017
DpnII	GATC	6 cut(s)	112, 385, 513, 561, 876, 1015
EaeI	YGGCCR	1 cut(s)	1129
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
Eco130I	CCWWGG	1 cut(s)	971
Eco31I	GGTCTC	1 cut(s)	1098
EcoRII	CCWGG	3 cut(s)	20, 285, 844
EcoT14I	CCWWGG	1 cut(s)	971
ErhI	CCWWGG	1 cut(s)	971
FaeI	CATG	5 cut(s)	185, 254, 925, 975, 1220
FalI	AAGNNNNNCTT	2 cut(s)	1217, 1249
FatI	CATG	5 cut(s)	181, 250, 921, 971, 1216
FauI	CCCGC	1 cut(s)	1124
FblI	GTMKAC	1 cut(s)	797
Fnu4HI	GCNGC	2 cut(s)	1132, 1172
FokI	GGATG	3 cut(s)	375, 538, 954
Fsp4HI	GCNGC	2 cut(s)	1132, 1172
FspBI	CTAG	4 cut(s)	54, 222, 869, 1255
GluI	GCNGC	2 cut(s)	1132, 1172
GsuI	CTGGAG	2 cut(s)	327, 729
HaeIII	GGCC	1 cut(s)	1131
HapII	CCGG	2 cut(s)	165, 358
Hin1II	CATG	5 cut(s)	185, 254, 925, 975, 1220
HincII	GTYRAC	2 cut(s)	64, 862
HindII	GTYRAC	2 cut(s)	64, 862
HindIII	AAGCTT	1 cut(s)	1071
HinfI	GANTC	2 cut(s)	454, 925
HpaII	CCGG	2 cut(s)	165, 358
HphI	GGTGA	3 cut(s)	599, 860, 1073
Hpy166II	GTNNAC	7 cut(s)	64, 143, 448, 487, 774, 798, 862
Hpy188I	TCNGA	2 cut(s)	112, 247
Hpy188III	TCNNGA	8 cut(s)	40, 122, 222, 325, 476, 729, 746, 1211
Hpy8I	GTNNAC	7 cut(s)	64, 143, 448, 487, 774, 798, 862
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	3 cut(s)	94, 322, 1130
HpyCH4III	ACNGT	5 cut(s)	199, 232, 484, 491, 611
HpyCH4V	TGCA	8 cut(s)	376, 683, 921, 1059, 1077, 1174, 1184, 1249
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 1051, 1070
HpyF3I	CTNAG	1 cut(s)	768
Hsp92II	CATG	5 cut(s)	185, 254, 925, 975, 1220
Kzo9I	GATC	6 cut(s)	112, 385, 513, 561, 876, 1015
LmnI	GCTCC	1 cut(s)	748
Lsp1109I	GCAGC	1 cut(s)	1158
LweI	GCATC	6 cut(s)	14, 72, 81, 516, 609, 1046
MaeI	CTAG	4 cut(s)	54, 222, 869, 1255
MaeIII	GTNAC	4 cut(s)	347, 363, 605, 611
MalI	GATC	6 cut(s)	114, 387, 515, 563, 878, 1017
MboI	GATC	6 cut(s)	112, 385, 513, 561, 876, 1015
MboII	GAAGA	1 cut(s)	452
MflI	RGATCY	2 cut(s)	561, 1015
MhlI	GDGCHC	2 cut(s)	574, 745
MluCI	AATT	9 cut(s)	153, 467, 628, 818, 941, 1048, 1097, 1153, 1179
MmeI	TCCRAC	4 cut(s)	90, 238, 363, 923
MnlI	CCTC	9 cut(s)	121, 203, 436, 897, 901, 975, 1146, 1152, 1155
MroXI	GAANNNNTTC	3 cut(s)	35, 471, 822
MseI	TTAA	5 cut(s)	533, 543, 882, 945, 1152
MslI	CAYNNNNRTG	1 cut(s)	123
MspA1I	CMGCKG	2 cut(s)	523, 658
MspI	CCGG	2 cut(s)	165, 358
MspR9I	CCNGG	4 cut(s)	22, 287, 359, 846
Mva1269I	GAATGC	1 cut(s)	1077
MvaI	CCWGG	3 cut(s)	22, 287, 846
MwoI	GCNNNNNNNGC	3 cut(s)	91, 1051, 1070
NciI	CCSGG	1 cut(s)	359
NcoI	CCATGG	1 cut(s)	971
NdeII	GATC	6 cut(s)	112, 385, 513, 561, 876, 1015
NlaIII	CATG	5 cut(s)	185, 254, 925, 975, 1220
NlaIV	GGNNCC	2 cut(s)	163, 763
NmuCI	GTSAC	2 cut(s)	605, 611
NspI	RCATGY	3 cut(s)	185, 254, 1220
PaeI	GCATGC	1 cut(s)	1220
PciI	ACATGT	2 cut(s)	181, 250
PctI	GAATGC	1 cut(s)	1077
PdmI	GAANNNNTTC	3 cut(s)	35, 471, 822
PfeI	GAWTC	2 cut(s)	454, 925
PkrI	GCNGC	2 cut(s)	1133, 1173
PscI	ACATGT	2 cut(s)	181, 250
Psp6I	CCWGG	3 cut(s)	20, 285, 844
PspGI	CCWGG	3 cut(s)	20, 285, 844
PspN4I	GGNNCC	2 cut(s)	163, 763
PstNI	CAGNNNCTG	1 cut(s)	838
PsuI	RGATCY	2 cut(s)	561, 1015
PvuII	CAGCTG	1 cut(s)	658
RsaI	GTAC	2 cut(s)	462, 773
RsaNI	GTAC	2 cut(s)	461, 772
RseI	CAYNNNNRTG	1 cut(s)	123
SaqAI	TTAA	5 cut(s)	533, 543, 882, 945, 1152
SatI	GCNGC	2 cut(s)	1132, 1172
Sau3AI	GATC	6 cut(s)	112, 385, 513, 561, 876, 1015
ScrFI	CCNGG	4 cut(s)	22, 287, 359, 846
SduI	GDGCHC	2 cut(s)	574, 745
SfaNI	GCATC	6 cut(s)	14, 72, 81, 516, 609, 1046
SfcI	CTRYAG	3 cut(s)	429, 505, 798
SmiMI	CAYNNNNRTG	1 cut(s)	123
SmlI	CTYRAG	2 cut(s)	86, 727
SmoI	CTYRAG	2 cut(s)	86, 727
SpeI	ACTAGT	1 cut(s)	868
SphI	GCATGC	1 cut(s)	1220
Sse9I	AATT	9 cut(s)	153, 467, 628, 818, 941, 1048, 1097, 1153, 1179
SsiI	CCGC	4 cut(s)	204, 523, 1117, 1132
SspMI	CTAG	4 cut(s)	54, 222, 869, 1255
StyD4I	CCNGG	4 cut(s)	20, 285, 357, 844
StyI	CCWWGG	1 cut(s)	971
TaaI	ACNGT	5 cut(s)	199, 232, 484, 491, 611
TaqI	TCGA	2 cut(s)	208, 1201
TasI	AATT	9 cut(s)	153, 467, 628, 818, 941, 1048, 1097, 1153, 1179
TatI	WGTACW	1 cut(s)	771
TauI	GCSGC	1 cut(s)	1134
TfiI	GAWTC	2 cut(s)	454, 925
Tru1I	TTAA	5 cut(s)	533, 543, 882, 945, 1152
Tru9I	TTAA	5 cut(s)	533, 543, 882, 945, 1152
TscAI	CASTG	3 cut(s)	237, 772, 1066
TseFI	GTSAC	2 cut(s)	605, 611
TseI	GCWGC	1 cut(s)	1171
Tsp45I	GTSAC	2 cut(s)	605, 611
TspDTI	ATGAA	2 cut(s)	938, 1110
TspRI	CASTG	3 cut(s)	237, 772, 1066
XapI	RAATTY	3 cut(s)	467, 628, 941
XbaI	TCTAGA	1 cut(s)	221
XceI	RCATGY	3 cut(s)	185, 254, 1220
XmiI	GTMKAC	1 cut(s)	797
XmnI	GAANNNNTTC	3 cut(s)	35, 471, 822
XspI	CTAG	4 cut(s)	54, 222, 869, 1255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.