Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025016.1

Orthogroup ID

OG0002559

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 702

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025016.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

gttttgggaactccaacgagggaggagataaagtgcatgaatccaaactatactgaatttaagttcccacagataaagcctcatccatggcacaaggtatttcaaaaacgcttgcctccagaagcagtagatcttgtttgtaggttttttcagtattcgcccaatttgcgatgcactgctttggaagcttgcattcaccctttctttgatgaattgagagacccaaatacccgccttcctaatggccgccctcttcctcctctgtttaatttcaaaacccaaggtgagtttgaactagcttctattgtggtaaacatgtcttctcggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

109

Amino Acids

12.75

Weight (kDa)

8.81

Isoelectric Point (pI)

52.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G57870 AT1G57870 AT1G57870 AT1G57870
fragaria_vesca	FvH4_5g28620 FvH4_5g28620 FvH4_5g28620 FvH4_5g28620 FvH4_5g28620 FvH4_5g28620
malus_domestica	MD08G1243600.v1.1 MD15G1437800.v1.1
prunus_persica	Prupe.1G580900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0220561
rosa_laevigata	RLG00000002217
rosa_multiflora	Rmu_sc0025016.1_g000001 Rmu_ssc0000189.1_g000031
rosa_roxburghii	Rroxscaffold_3G00239300
rosa_rugosa	Rorug07G0194800 Rorug07G0194800 Rorug07G0194900 Rorug07G0195000
rosa_samantha	Rh2AG332300 Rh7AG336000 Rh7BG327100 Rh7CG353700 Rh7DG332300
rosa_wichuraiana	Rw0G017340 Rw7G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	232, 247
AcoI	YGGCCR	1 cut(s)	244
AcsI	RAATTY	1 cut(s)	56
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	3 cut(s)	104, 274, 293
AluBI	AGCT	2 cut(s)	188, 299
AluI	AGCT	2 cut(s)	188, 299
Alw26I	GTCTC	1 cut(s)	213
AoxI	GGCC	1 cut(s)	244
ApoI	RAATTY	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	188, 296
BbsI	GAAGAC	1 cut(s)	312
BcoDI	GTCTC	1 cut(s)	213
BfaI	CTAG	1 cut(s)	296
BglII	AGATCT	1 cut(s)	130
BisI	GCNGC	1 cut(s)	247
BlsI	GCNGC	1 cut(s)	248
BmsI	GCATC	1 cut(s)	161
BpiI	GAAGAC	1 cut(s)	312
BpmI	CTGGAG	1 cut(s)	102
BsaI	GGTCTC	1 cut(s)	213
BsaJI	CCNNGG	2 cut(s)	86, 280
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
BseDI	CCNNGG	2 cut(s)	86, 280
BseGI	GGATG	1 cut(s)	82
BseRI	GAGGAG	2 cut(s)	38, 249
BshFI	GGCC	1 cut(s)	246
BsmAI	GTCTC	1 cut(s)	213
BsmI	GAATGC	1 cut(s)	192
BsnI	GGCC	1 cut(s)	246
Bso31I	GGTCTC	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	130
Bsp19I	CCATGG	1 cut(s)	86
BspACI	CCGC	2 cut(s)	232, 247
BspANI	GGCC	1 cut(s)	246
BspTNI	GGTCTC	1 cut(s)	213
BssECI	CCNNGG	2 cut(s)	86, 280
BssMI	GATC	1 cut(s)	130
BssT1I	CCWWGG	2 cut(s)	86, 280
Bst6I	CTCTTC	1 cut(s)	258
BstC8I	GCNNGC	2 cut(s)	113, 190
BstDSI	CCRYGG	1 cut(s)	86
BstF5I	GGATG	1 cut(s)	82
BstKTI	GATC	1 cut(s)	133
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 185
BstNSI	RCATGY	1 cut(s)	319
BstV2I	GAAGAC	1 cut(s)	312
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BsuRI	GGCC	1 cut(s)	246
BtgI	CCRYGG	1 cut(s)	86
BtgZI	GCGATG	1 cut(s)	184
BtsCI	GGATG	1 cut(s)	82
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	2 cut(s)	113, 190
CviAII	CATG	3 cut(s)	37, 87, 316
CviJI	RGCY	4 cut(s)	79, 188, 246, 299
CviKI_1	RGCY	4 cut(s)	79, 188, 246, 299
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
EaeI	YGGCCR	1 cut(s)	244
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco130I	CCWWGG	2 cut(s)	86, 280
Eco31I	GGTCTC	1 cut(s)	213
EcoT14I	CCWWGG	2 cut(s)	86, 280
ErhI	CCWWGG	2 cut(s)	86, 280
FaeI	CATG	3 cut(s)	40, 90, 319
FaiI	YATR	4 cut(s)	38, 51, 88, 317
FatI	CATG	3 cut(s)	36, 86, 315
FauI	CCCGC	1 cut(s)	239
Fnu4HI	GCNGC	1 cut(s)	247
FokI	GGATG	1 cut(s)	69
Fsp4HI	GCNGC	1 cut(s)	247
FspBI	CTAG	1 cut(s)	296
GluI	GCNGC	1 cut(s)	247
GsuI	CTGGAG	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	246
Hin1II	CATG	3 cut(s)	40, 90, 319
HindIII	AAGCTT	1 cut(s)	186
HinfI	GANTC	1 cut(s)	40
HphI	GGTGA	2 cut(s)	188, 296
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	1 cut(s)	245
HpyCH4V	TGCA	3 cut(s)	36, 174, 192
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 185
Hsp92II	CATG	3 cut(s)	40, 90, 319
Kzo9I	GATC	1 cut(s)	130
LpnPI	CCDG	1 cut(s)	132
LweI	GCATC	1 cut(s)	161
MaeI	CTAG	1 cut(s)	296
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	2 cut(s)	245, 312
MflI	RGATCY	1 cut(s)	130
MluCI	AATT	4 cut(s)	56, 163, 212, 268
MmeI	TCCRAC	1 cut(s)	38
MnlI	CCTC	7 cut(s)	12, 16, 90, 126, 261, 267, 270
MseI	TTAA	2 cut(s)	60, 267
Mva1269I	GAATGC	1 cut(s)	192
MwoI	GCNNNNNNNGC	2 cut(s)	166, 185
NcoI	CCATGG	1 cut(s)	86
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	3 cut(s)	40, 90, 319
NspI	RCATGY	1 cut(s)	319
PciI	ACATGT	1 cut(s)	315
PctI	GAATGC	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	40
PkrI	GCNGC	1 cut(s)	248
PscI	ACATGT	1 cut(s)	315
PsuI	RGATCY	1 cut(s)	130
SaqAI	TTAA	2 cut(s)	60, 267
SatI	GCNGC	1 cut(s)	247
Sau3AI	GATC	1 cut(s)	130
SetI	ASST	5 cut(s)	99, 146, 190, 286, 301
SfaNI	GCATC	1 cut(s)	161
Sse9I	AATT	4 cut(s)	56, 163, 212, 268
SsiI	CCGC	2 cut(s)	232, 247
SspMI	CTAG	1 cut(s)	296
StyI	CCWWGG	2 cut(s)	86, 280
TasI	AATT	4 cut(s)	56, 163, 212, 268
TauI	GCSGC	1 cut(s)	249
TfiI	GAWTC	1 cut(s)	40
Tru1I	TTAA	2 cut(s)	60, 267
Tru9I	TTAA	2 cut(s)	60, 267
TscAI	CASTG	1 cut(s)	181
TspDTI	ATGAA	2 cut(s)	53, 225
TspRI	CASTG	1 cut(s)	181
XapI	RAATTY	1 cut(s)	56
XceI	RCATGY	1 cut(s)	319
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.