Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002559

Physical Location & Seq

Genomic Coordinates Forward (+)

40729140 .. 40732824

Gene Structure 3685 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG332300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGCAAATGTTGGATCATCCAAACATTGTTTCCCTAAAACATTGCTTCTTTTCAACTACAGACAAAGAAGAGGTTTACCTGAATCTCGTACTTGAATTTGTTCCTGAAACTGTTTACCGTATCGCAAGGAACTATAGCAGGATCAACCAGCGGATGCCTTTAATATATGTTAAACTTTATACCTACCAGATCTGTCGGGCACTTGCTTATATACATAATGGCATTGGCATCTGTCACCGTGACATCAAGCCTCAAAATTTACTTGTAAATCCACACACACATCAGCTGAAACTTTGTGATTTTGGGAGTGCAAAAGTCTTGGTAAAAGGAGAACCCAATGTGTCTTATATCTGCTCAAGATACTATCGTGCTCCAGAACTGATATTTGGTGCCACTGAGTACACAAGTGCTATTGATATATGGTCTACAGGTTGTGTGATGGCCGAATTGCTTCTTGGACAGCCCCTGTTTCCTGGTGAAAGTGGAGTTGACCAACTAGTTGAGATCATTAAGGTTTTGGGAACTCCAACGAGGGAGGAGATAAAGTGCATGAATCCAAACTATACTGAATTTAAGTTCCCACAGATAAAGCCTCATCCATGGCACAAGGTATTTCAAAAACGCTTGCCTCCAGAAGCAGTAGATCTTGTTTGTAGGTTTTTTCAGTATTCGCCCAATTTGCGATGCACTGCTTTGGAAGCTTGCATTCACCCTTTCTTTGATGAATTGAGAGACCCAAATACCCGCCTTCCTAATGGCCGCCCTCTTCCTCCTCTGTTTAATTTCAAAACCCAAGAGCTTCAAGGAATTGCACCTGATATTGTCAATCGACTTATTCCAGAGCATGCCCGTAAGCAGAACTTATTTATGGCTTTGCATACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

294

Amino Acids

34.01

Weight (kDa)

8.47

Isoelectric Point (pI)

32.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 240	1.7e-48	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	1 - 158	3.5e-16	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G57870 AT1G57870 AT1G57870 AT1G57870
fragaria_vesca	FvH4_5g28620 FvH4_5g28620 FvH4_5g28620 FvH4_5g28620 FvH4_5g28620 FvH4_5g28620
malus_domestica	MD08G1243600.v1.1 MD15G1437800.v1.1
prunus_persica	Prupe.1G580900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0220561
rosa_laevigata	RLG00000002217
rosa_multiflora	Rmu_sc0025016.1_g000001 Rmu_ssc0000189.1_g000031
rosa_roxburghii	Rroxscaffold_3G00239300
rosa_rugosa	Rorug07G0194800 Rorug07G0194800 Rorug07G0194900 Rorug07G0195000
rosa_samantha	Rh2AG332300 Rh7AG336000 Rh7BG327100 Rh7CG353700 Rh7DG332300
rosa_wichuraiana	Rw0G017340 Rw7G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	389
AccI	GTMKAC	1 cut(s)	425
AciI	CCGC	3 cut(s)	151, 745, 760
AclWI	GGATC	2 cut(s)	21, 149
AcoI	YGGCCR	2 cut(s)	441, 757
AcsI	RAATTY	3 cut(s)	95, 256, 569
AfaI	GTAC	2 cut(s)	90, 401
AgsI	TTSAA	5 cut(s)	54, 95, 617, 787, 803
AhlI	ACTAGT	1 cut(s)	496
AjnI	CCWGG	1 cut(s)	472
AjuI	GAANNNNNNNTTGG	6 cut(s)	13, 45, 369, 401, 438, 470
AluBI	AGCT	3 cut(s)	286, 701, 799
AluI	AGCT	3 cut(s)	286, 701, 799
Alw21I	GWGCWC	1 cut(s)	373
Alw26I	GTCTC	1 cut(s)	726
AlwI	GGATC	2 cut(s)	21, 149
AlwNI	CAGNNNCTG	1 cut(s)	466
AoxI	GGCC	2 cut(s)	441, 757
ApoI	RAATTY	3 cut(s)	95, 256, 569
Asp700I	GAANNNNTTC	2 cut(s)	99, 450
AsuHPI	GGTGA	3 cut(s)	227, 488, 701
BaeGI	GKGCMC	1 cut(s)	202
BaeI	ACNNNNGTAYC	2 cut(s)	352, 385
BanI	GGYRCC	1 cut(s)	389
Bbv12I	GWGCWC	1 cut(s)	373
BccI	CCATC	1 cut(s)	433
BciT130I	CCWGG	1 cut(s)	474
BcoDI	GTCTC	1 cut(s)	726
BcuI	ACTAGT	1 cut(s)	496
BfaI	CTAG	2 cut(s)	497, 883
BfmI	CTRYAG	3 cut(s)	57, 133, 426
BglII	AGATCT	2 cut(s)	189, 643
BisI	GCNGC	1 cut(s)	760
BlsI	GCNGC	1 cut(s)	761
Bme1390I	CCNGG	1 cut(s)	474
BmiI	GGNNCC	1 cut(s)	391
BmrFI	CCNGG	1 cut(s)	474
BmsI	GCATC	3 cut(s)	144, 237, 674
BpmI	CTGGAG	2 cut(s)	357, 615
BpuEI	CTTGAG	1 cut(s)	340
BsaI	GGTCTC	1 cut(s)	726
BsaJI	CCNNGG	1 cut(s)	599
BsaXI	ACNNNNNCTCC	2 cut(s)	530, 560
Bse3DI	GCAATG	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	1 cut(s)	599
BseGI	GGATG	3 cut(s)	16, 159, 595
BseMI	GCAATG	1 cut(s)	40
BseMII	CTCAG	1 cut(s)	387
BseRI	GAGGAG	2 cut(s)	551, 762
BseSI	GKGCMC	1 cut(s)	202
BshFI	GGCC	2 cut(s)	443, 759
BshNI	GGYRCC	1 cut(s)	389
BsiHKAI	GWGCWC	1 cut(s)	373
BsmAI	GTCTC	1 cut(s)	726
BsmI	GAATGC	1 cut(s)	705
BsnI	GGCC	2 cut(s)	443, 759
Bso31I	GGTCTC	1 cut(s)	726
Bsp1286I	GDGCHC	2 cut(s)	202, 373
Bsp143I	GATC	5 cut(s)	13, 141, 189, 504, 643
Bsp19I	CCATGG	1 cut(s)	599
BspACI	CCGC	3 cut(s)	151, 745, 760
BspANI	GGCC	2 cut(s)	443, 759
BspCNI	CTCAG	1 cut(s)	388
BspLI	GGNNCC	1 cut(s)	391
BspPI	GGATC	2 cut(s)	21, 149
BspT107I	GGYRCC	1 cut(s)	389
BspTNI	GGTCTC	1 cut(s)	726
BsrDI	GCAATG	1 cut(s)	40
BssECI	CCNNGG	1 cut(s)	599
BssMI	GATC	5 cut(s)	13, 141, 189, 504, 643
BssT1I	CCWWGG	1 cut(s)	599
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	3 cut(s)	112, 119, 239
Bst6I	CTCTTC	2 cut(s)	63, 771
BstC8I	GCNNGC	3 cut(s)	626, 703, 846
BstDEI	CTNAG	1 cut(s)	396
BstDSI	CCRYGG	1 cut(s)	599
BstF5I	GGATG	3 cut(s)	16, 159, 595
BstKTI	GATC	5 cut(s)	16, 144, 192, 507, 646
BstMAI	GTCTC	1 cut(s)	726
BstMBI	GATC	5 cut(s)	13, 141, 189, 504, 643
BstMWI	GCNNNNNNNGC	2 cut(s)	679, 698
BstNI	CCWGG	1 cut(s)	474
BstNSI	RCATGY	1 cut(s)	848
BstSCI	CCNGG	1 cut(s)	472
BstSFI	CTRYAG	3 cut(s)	57, 133, 426
BstSLI	GKGCMC	1 cut(s)	202
BstX2I	RGATCY	2 cut(s)	189, 643
BstYI	RGATCY	2 cut(s)	189, 643
BsuRI	GGCC	2 cut(s)	443, 759
BtgI	CCRYGG	1 cut(s)	599
BtgZI	GCGATG	1 cut(s)	697
BtsCI	GGATG	3 cut(s)	16, 159, 595
BtsI	GCAGTG	1 cut(s)	687
BtsIMutI	CAGTG	2 cut(s)	393, 687
Cac8I	GCNNGC	3 cut(s)	626, 703, 846
CaiI	CAGNNNCTG	1 cut(s)	466
Csp6I	GTAC	2 cut(s)	89, 400
CviAII	CATG	3 cut(s)	550, 600, 845
CviJI	RGCY	9 cut(s)	250, 286, 443, 463, 592, 701, 759, 799, 872
CviKI_1	RGCY	9 cut(s)	250, 286, 443, 463, 592, 701, 759, 799, 872
CviQI	GTAC	2 cut(s)	89, 400
DdeI	CTNAG	1 cut(s)	396
DpnI	GATC	5 cut(s)	15, 143, 191, 506, 645
DpnII	GATC	5 cut(s)	13, 141, 189, 504, 643
EaeI	YGGCCR	2 cut(s)	441, 757
Eam1104I	CTCTTC	2 cut(s)	63, 771
EarI	CTCTTC	2 cut(s)	63, 771
Eco130I	CCWWGG	1 cut(s)	599
Eco31I	GGTCTC	1 cut(s)	726
EcoRII	CCWGG	1 cut(s)	472
EcoT14I	CCWWGG	1 cut(s)	599
ErhI	CCWWGG	1 cut(s)	599
FaeI	CATG	3 cut(s)	553, 603, 848
FalI	AAGNNNNNCTT	2 cut(s)	845, 877
FatI	CATG	3 cut(s)	549, 599, 844
FauI	CCCGC	1 cut(s)	752
FblI	GTMKAC	1 cut(s)	425
Fnu4HI	GCNGC	1 cut(s)	760
FokI	GGATG	3 cut(s)	3, 166, 582
Fsp4HI	GCNGC	1 cut(s)	760
FspBI	CTAG	2 cut(s)	497, 883
GluI	GCNGC	1 cut(s)	760
GsuI	CTGGAG	2 cut(s)	357, 615
HaeIII	GGCC	2 cut(s)	443, 759
Hin1II	CATG	3 cut(s)	553, 603, 848
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HindIII	AAGCTT	1 cut(s)	699
HinfI	GANTC	2 cut(s)	82, 553
HphI	GGTGA	3 cut(s)	227, 488, 701
Hpy166II	GTNNAC	5 cut(s)	76, 115, 402, 426, 490
Hpy188III	TCNNGA	5 cut(s)	104, 357, 374, 632, 839
Hpy8I	GTNNAC	5 cut(s)	76, 115, 402, 426, 490
HpyAV	CCTTC	1 cut(s)	758
HpyCH4III	ACNGT	3 cut(s)	112, 119, 239
HpyCH4V	TGCA	7 cut(s)	4, 311, 549, 687, 705, 812, 877
HpyF10VI	GCNNNNNNNGC	2 cut(s)	679, 698
HpyF3I	CTNAG	1 cut(s)	396
Hsp92II	CATG	3 cut(s)	553, 603, 848
Kzo9I	GATC	5 cut(s)	13, 141, 189, 504, 643
LmnI	GCTCC	1 cut(s)	376
LweI	GCATC	3 cut(s)	144, 237, 674
MaeI	CTAG	2 cut(s)	497, 883
MaeIII	GTNAC	2 cut(s)	233, 239
MalI	GATC	5 cut(s)	15, 143, 191, 506, 645
MboI	GATC	5 cut(s)	13, 141, 189, 504, 643
MboII	GAAGA	2 cut(s)	80, 758
MflI	RGATCY	2 cut(s)	189, 643
MhlI	GDGCHC	2 cut(s)	202, 373
MluCI	AATT	8 cut(s)	95, 256, 446, 569, 676, 725, 781, 807
MmeI	TCCRAC	1 cut(s)	551
MnlI	CCTC	9 cut(s)	64, 261, 525, 529, 603, 639, 774, 780, 783
MroXI	GAANNNNTTC	2 cut(s)	99, 450
MseI	TTAA	5 cut(s)	161, 171, 510, 573, 780
MspA1I	CMGCKG	2 cut(s)	151, 286
MspR9I	CCNGG	1 cut(s)	474
Mva1269I	GAATGC	1 cut(s)	705
MvaI	CCWGG	1 cut(s)	474
MwoI	GCNNNNNNNGC	2 cut(s)	679, 698
NcoI	CCATGG	1 cut(s)	599
NdeII	GATC	5 cut(s)	13, 141, 189, 504, 643
NlaIII	CATG	3 cut(s)	553, 603, 848
NlaIV	GGNNCC	1 cut(s)	391
NmuCI	GTSAC	2 cut(s)	233, 239
NspI	RCATGY	1 cut(s)	848
PaeI	GCATGC	1 cut(s)	848
PctI	GAATGC	1 cut(s)	705
PdmI	GAANNNNTTC	2 cut(s)	99, 450
PfeI	GAWTC	2 cut(s)	82, 553
PkrI	GCNGC	1 cut(s)	761
Psp6I	CCWGG	1 cut(s)	472
PspGI	CCWGG	1 cut(s)	472
PspN4I	GGNNCC	1 cut(s)	391
PstNI	CAGNNNCTG	1 cut(s)	466
PsuI	RGATCY	2 cut(s)	189, 643
PvuII	CAGCTG	1 cut(s)	286
RsaI	GTAC	2 cut(s)	90, 401
RsaNI	GTAC	2 cut(s)	89, 400
SaqAI	TTAA	5 cut(s)	161, 171, 510, 573, 780
SatI	GCNGC	1 cut(s)	760
Sau3AI	GATC	5 cut(s)	13, 141, 189, 504, 643
ScrFI	CCNGG	1 cut(s)	474
SduI	GDGCHC	2 cut(s)	202, 373
SfaNI	GCATC	3 cut(s)	144, 237, 674
SfcI	CTRYAG	3 cut(s)	57, 133, 426
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
SpeI	ACTAGT	1 cut(s)	496
SphI	GCATGC	1 cut(s)	848
Sse9I	AATT	8 cut(s)	95, 256, 446, 569, 676, 725, 781, 807
SsiI	CCGC	3 cut(s)	151, 745, 760
SspMI	CTAG	2 cut(s)	497, 883
StyD4I	CCNGG	1 cut(s)	472
StyI	CCWWGG	1 cut(s)	599
TaaI	ACNGT	3 cut(s)	112, 119, 239
TaqI	TCGA	1 cut(s)	829
TasI	AATT	8 cut(s)	95, 256, 446, 569, 676, 725, 781, 807
TatI	WGTACW	1 cut(s)	399
TauI	GCSGC	1 cut(s)	762
TfiI	GAWTC	2 cut(s)	82, 553
Tru1I	TTAA	5 cut(s)	161, 171, 510, 573, 780
Tru9I	TTAA	5 cut(s)	161, 171, 510, 573, 780
TscAI	CASTG	2 cut(s)	400, 694
TseFI	GTSAC	2 cut(s)	233, 239
Tsp45I	GTSAC	2 cut(s)	233, 239
TspDTI	ATGAA	2 cut(s)	566, 738
TspRI	CASTG	2 cut(s)	400, 694
XapI	RAATTY	3 cut(s)	95, 256, 569
XceI	RCATGY	1 cut(s)	848
XmiI	GTMKAC	1 cut(s)	425
XmnI	GAANNNNTTC	2 cut(s)	99, 450
XspI	CTAG	2 cut(s)	497, 883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.