Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002559

Physical Location & Seq

Genomic Coordinates Forward (+)

48047588 .. 48066457

Gene Structure 18870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG332300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGCTGGAGAAGCAAACAAGGACAGATCGAATTGGTGAACCTGATATAATTGATGGTGTAGGTGCTGAAACAGGACATGTAATACGCACAACTGTTGGCGGTCGAGGTGGTCAATCTAGACAGACAGTAAGTTATATTTCAGAACATGTGGTTGGAATTGGCTCTTTTGGGGTTGTTTTCCAGGCGAAATGTAGAGAAATTGGAGAGATTGTTGCTATCAAGAAGATTCTCCAAGACAAGCGTTACAAGAACCTGGAGTTACAGATTATGCAAATGTTGGATCATCTAAACATTGTTTCCCTAAAACATTGCTTCTTTTCAACTACAGACAGAGAAGAGGTTTACTTGAATCTTGTACTTGAATTTGTTCCTGAAACTGTTTACCGTATCCCAAGGAACTATAGCAGGATCAACCAGCAAATGCCTTTAATATATGTTAAACTTTATACCTACCAGATCTGTCGGGCACTTGCTTATATACATAATGGCTTTGGCATTTGTCATCGTGACATCAAGCCTCAAAATTTAGTTGTAAATCCACACACACATCAGCTGAAACTTTGTGATTTTGGGAGTGCAAAAGTCTTGAGTGAGCCAGACAGAATTGTTGGGGAGCTATTGCAGCCTGGGGGATATCTCAAATTGATTGAATTGGGTCTTGAAGTCTTGGTCTCCTCCGCTGCAAGACTAATGATTGAGAGATTGATGATTTGGTTCTTCAAACTGATAGTCTCCGAGATAGAGTTGATTGAAACCCGGCCAAGGATCTTTCCATTTGATTACCAAAGCTACCCAGAATCCCAGGATGATAAACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

272

Amino Acids

31.24

Weight (kDa)

7.08

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	46 - 199	4e-32	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	49 - 198	4.4e-15	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G09840 AT1G57870 AT1G57870 AT1G57870 AT1G57870
fragaria_vesca	FvH4_5g28620 FvH4_5g28620 FvH4_5g28620 FvH4_5g28620 FvH4_5g28620 FvH4_5g28620
malus_domestica	MD08G1243600.v1.1 MD15G1437800.v1.1
prunus_persica	Prupe.1G580900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0220561
rosa_laevigata	RLG00000002217
rosa_multiflora	Rmu_sc0025016.1_g000001 Rmu_ssc0000189.1_g000031
rosa_roxburghii	Rroxscaffold_3G00239300
rosa_rugosa	Rorug07G0194800 Rorug07G0194800 Rorug07G0194900 Rorug07G0195000
rosa_samantha	Rh2AG332300 Rh7AG336000 Rh7BG327100 Rh7CG353700 Rh7DG332300
rosa_wichuraiana	Rw0G017340 Rw7G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	99, 678
AclWI	GGATC	3 cut(s)	288, 416, 773
AcoI	YGGCCR	1 cut(s)	758
AcsI	RAATTY	2 cut(s)	362, 523
AfaI	GTAC	1 cut(s)	357
AfiI	CCNNNNNNNGG	1 cut(s)	762
AflIII	ACRYGT	2 cut(s)	76, 145
AgsI	TTSAA	7 cut(s)	321, 349, 362, 650, 662, 721, 752
AjnI	CCWGG	4 cut(s)	180, 252, 625, 801
AjuI	GAANNNNNNNTTGG	2 cut(s)	135, 167
AluBI	AGCT	3 cut(s)	553, 616, 789
AluI	AGCT	3 cut(s)	553, 616, 789
Alw26I	GTCTC	2 cut(s)	676, 736
AlwI	GGATC	3 cut(s)	288, 416, 773
AoxI	GGCC	1 cut(s)	758
ApeKI	GCWGC	2 cut(s)	622, 680
ApoI	RAATTY	2 cut(s)	362, 523
ArsI	GACNNNNNNTTYG	2 cut(s)	714, 746
Asp700I	GAANNNNTTC	1 cut(s)	366
AsuC2I	CCSGG	1 cut(s)	757
AsuHPI	GGTGA	1 cut(s)	47
BaeGI	GKGCMC	1 cut(s)	469
BbvI	GCAGC	2 cut(s)	634, 667
BccI	CCATC	1 cut(s)	47
BciT130I	CCWGG	4 cut(s)	182, 254, 627, 803
BciVI	GTATCC	1 cut(s)	398
BcnI	CCSGG	1 cut(s)	757
BcoDI	GTCTC	2 cut(s)	676, 736
BfaI	CTAG	2 cut(s)	117, 817
BfmI	CTRYAG	2 cut(s)	324, 400
BfuI	GTATCC	1 cut(s)	398
BglII	AGATCT	1 cut(s)	456
BisI	GCNGC	2 cut(s)	623, 681
BlsI	GCNGC	2 cut(s)	624, 682
Bme1390I	CCNGG	5 cut(s)	182, 254, 627, 757, 803
BmrFI	CCNGG	5 cut(s)	182, 254, 627, 757, 803
BpmI	CTGGAG	2 cut(s)	26, 275
BpuEI	CTTGAG	1 cut(s)	607
BpuMI	CCSGG	1 cut(s)	757
BsaI	GGTCTC	1 cut(s)	676
BsaJI	CCNNGG	4 cut(s)	392, 626, 761, 801
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bsc4I	CCNNNNNNNGG	1 cut(s)	762
Bse3DI	GCAATG	1 cut(s)	307
BseBI	CCWGG	4 cut(s)	182, 254, 627, 803
BseDI	CCNNGG	4 cut(s)	392, 626, 761, 801
BseGI	GGATG	1 cut(s)	811
BseLI	CCNNNNNNNGG	1 cut(s)	762
BseMI	GCAATG	1 cut(s)	307
BseRI	GAGGAG	1 cut(s)	664
BseSI	GKGCMC	1 cut(s)	469
BseXI	GCAGC	2 cut(s)	634, 667
Bsh1285I	CGRYCG	1 cut(s)	103
BshFI	GGCC	1 cut(s)	760
BsiEI	CGRYCG	1 cut(s)	103
BsiSI	CCGG	1 cut(s)	757
BslI	CCNNNNNNNGG	1 cut(s)	762
BsmAI	GTCTC	2 cut(s)	676, 736
BsnI	GGCC	1 cut(s)	760
Bso31I	GGTCTC	1 cut(s)	676
Bsp1286I	GDGCHC	1 cut(s)	469
Bsp143I	GATC	5 cut(s)	25, 280, 408, 456, 765
BspACI	CCGC	2 cut(s)	99, 678
BspANI	GGCC	1 cut(s)	760
BspPI	GGATC	3 cut(s)	288, 416, 773
BspTNI	GGTCTC	1 cut(s)	676
BsrDI	GCAATG	1 cut(s)	307
BssECI	CCNNGG	4 cut(s)	392, 626, 761, 801
BssMI	GATC	5 cut(s)	25, 280, 408, 456, 765
BssT1I	CCWWGG	2 cut(s)	392, 761
Bst2UI	CCWGG	4 cut(s)	182, 254, 627, 803
Bst4CI	ACNGT	4 cut(s)	94, 127, 379, 386
Bst6I	CTCTTC	1 cut(s)	330
BstF5I	GGATG	1 cut(s)	811
BstKTI	GATC	5 cut(s)	28, 283, 411, 459, 768
BstMAI	GTCTC	2 cut(s)	676, 736
BstMBI	GATC	5 cut(s)	25, 280, 408, 456, 765
BstMCI	CGRYCG	1 cut(s)	103
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 622
BstNI	CCWGG	4 cut(s)	182, 254, 627, 803
BstNSI	RCATGY	2 cut(s)	80, 149
BstSCI	CCNGG	5 cut(s)	180, 252, 625, 755, 801
BstSFI	CTRYAG	2 cut(s)	324, 400
BstSLI	GKGCMC	1 cut(s)	469
BstV1I	GCAGC	2 cut(s)	634, 667
BstX2I	RGATCY	2 cut(s)	456, 765
BstYI	RGATCY	2 cut(s)	456, 765
BsuI	GTATCC	1 cut(s)	398
BsuRI	GGCC	1 cut(s)	760
BtsCI	GGATG	1 cut(s)	811
Csp6I	GTAC	1 cut(s)	356
CviAII	CATG	2 cut(s)	77, 146
CviJI	RGCY	9 cut(s)	162, 489, 517, 553, 595, 616, 625, 760, 789
CviKI_1	RGCY	9 cut(s)	162, 489, 517, 553, 595, 616, 625, 760, 789
CviQI	GTAC	1 cut(s)	356
DpnI	GATC	5 cut(s)	27, 282, 410, 458, 767
DpnII	GATC	5 cut(s)	25, 280, 408, 456, 765
EaeI	YGGCCR	1 cut(s)	758
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco130I	CCWWGG	2 cut(s)	392, 761
Eco31I	GGTCTC	1 cut(s)	676
Eco32I	GATATC	1 cut(s)	635
EcoRII	CCWGG	4 cut(s)	180, 252, 625, 801
EcoRV	GATATC	1 cut(s)	635
EcoT14I	CCWWGG	2 cut(s)	392, 761
ErhI	CCWWGG	2 cut(s)	392, 761
FaeI	CATG	2 cut(s)	80, 149
FatI	CATG	2 cut(s)	76, 145
Fnu4HI	GCNGC	2 cut(s)	623, 681
Fsp4HI	GCNGC	2 cut(s)	623, 681
FspBI	CTAG	2 cut(s)	117, 817
GluI	GCNGC	2 cut(s)	623, 681
GsuI	CTGGAG	2 cut(s)	26, 275
HaeIII	GGCC	1 cut(s)	760
HapII	CCGG	1 cut(s)	757
Hin1II	CATG	2 cut(s)	80, 149
HinfI	GANTC	3 cut(s)	226, 349, 797
HpaII	CCGG	1 cut(s)	757
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	3 cut(s)	38, 343, 382
Hpy188I	TCNGA	2 cut(s)	142, 736
Hpy188III	TCNNGA	6 cut(s)	117, 220, 371, 506, 586, 659
Hpy8I	GTNNAC	3 cut(s)	38, 343, 382
HpyCH4III	ACNGT	4 cut(s)	94, 127, 379, 386
HpyCH4V	TGCA	4 cut(s)	271, 578, 622, 683
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 622
Hsp92II	CATG	2 cut(s)	80, 149
Kzo9I	GATC	5 cut(s)	25, 280, 408, 456, 765
LmnI	GCTCC	1 cut(s)	613
Lsp1109I	GCAGC	2 cut(s)	634, 667
MaeI	CTAG	2 cut(s)	117, 817
MaeIII	GTNAC	3 cut(s)	242, 258, 506
MalI	GATC	5 cut(s)	27, 282, 410, 458, 767
MboI	GATC	5 cut(s)	25, 280, 408, 456, 765
MboII	GAAGA	3 cut(s)	235, 347, 709
MflI	RGATCY	2 cut(s)	456, 765
MhlI	GDGCHC	1 cut(s)	469
MluCI	AATT	9 cut(s)	30, 48, 156, 198, 362, 523, 603, 641, 650
MmeI	TCCRAC	2 cut(s)	133, 258
MnlI	CCTC	4 cut(s)	98, 331, 528, 685
MroXI	GAANNNNTTC	1 cut(s)	366
MseI	TTAA	2 cut(s)	428, 438
MspA1I	CMGCKG	2 cut(s)	553, 680
MspI	CCGG	1 cut(s)	757
MspR9I	CCNGG	5 cut(s)	182, 254, 627, 757, 803
MvaI	CCWGG	4 cut(s)	182, 254, 627, 803
MwoI	GCNNNNNNNGC	2 cut(s)	10, 622
NciI	CCSGG	1 cut(s)	757
NdeII	GATC	5 cut(s)	25, 280, 408, 456, 765
NlaIII	CATG	2 cut(s)	80, 149
NmuCI	GTSAC	1 cut(s)	506
NspI	RCATGY	2 cut(s)	80, 149
PciI	ACATGT	2 cut(s)	76, 145
PdmI	GAANNNNTTC	1 cut(s)	366
PfeI	GAWTC	3 cut(s)	226, 349, 797
PkrI	GCNGC	2 cut(s)	624, 682
PscI	ACATGT	2 cut(s)	76, 145
Psp6I	CCWGG	4 cut(s)	180, 252, 625, 801
PspGI	CCWGG	4 cut(s)	180, 252, 625, 801
PsuI	RGATCY	2 cut(s)	456, 765
PvuII	CAGCTG	1 cut(s)	553
RsaI	GTAC	1 cut(s)	357
RsaNI	GTAC	1 cut(s)	356
SaqAI	TTAA	2 cut(s)	428, 438
SatI	GCNGC	2 cut(s)	623, 681
Sau3AI	GATC	5 cut(s)	25, 280, 408, 456, 765
ScrFI	CCNGG	5 cut(s)	182, 254, 627, 757, 803
SduI	GDGCHC	1 cut(s)	469
SetI	ASST	9 cut(s)	43, 64, 109, 255, 342, 452, 555, 618, 791
SfcI	CTRYAG	2 cut(s)	324, 400
SmlI	CTYRAG	1 cut(s)	586
SmoI	CTYRAG	1 cut(s)	586
Sse9I	AATT	9 cut(s)	30, 48, 156, 198, 362, 523, 603, 641, 650
SsiI	CCGC	2 cut(s)	99, 678
SspMI	CTAG	2 cut(s)	117, 817
StyD4I	CCNGG	5 cut(s)	180, 252, 625, 755, 801
StyI	CCWWGG	2 cut(s)	392, 761
TaaI	ACNGT	4 cut(s)	94, 127, 379, 386
TaqI	TCGA	2 cut(s)	28, 103
TasI	AATT	9 cut(s)	30, 48, 156, 198, 362, 523, 603, 641, 650
TatI	WGTACW	1 cut(s)	355
TfiI	GAWTC	3 cut(s)	226, 349, 797
Tru1I	TTAA	2 cut(s)	428, 438
Tru9I	TTAA	2 cut(s)	428, 438
TseFI	GTSAC	1 cut(s)	506
TseI	GCWGC	2 cut(s)	622, 680
Tsp45I	GTSAC	1 cut(s)	506
XapI	RAATTY	2 cut(s)	362, 523
XbaI	TCTAGA	1 cut(s)	116
XceI	RCATGY	2 cut(s)	80, 149
XmnI	GAANNNNTTC	1 cut(s)	366
XspI	CTAG	2 cut(s)	117, 817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.