MD08G1243600.v1.1
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
30893220 .. 30899744
6525 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1243600.v1.1.491

Sequence Viewer

Length: 1278 bp
ATGGCGTCTGCTGGCCTAGGGAATGGTGGAGTTGGCAGTTCAAGGTCTGTGAATGGCTTCAAGAGTTCGTCTAGTTCGGTTGATTGGCTGGGGAGGGAGATGCTCGAGATGAGGTTGCAGGACAAGCCAGATCATGATGACGAAAGAGATAGTGAACCGGATGTAATTGATGGAGTGGGTGCTGAAACAGGACACGTAATAAGAACGACTGTTGGTGGTCGAAGTGGTCAATCTAGACAGACAGTAAGCTATATTTCAGAACATGTGGTTGGAACTGGTTCTTTTGGGGTTGTTTTCCAGGCGAAATGTAGAGAAACTGGAGAGATTGTTGCTATCAAGAAGGTGCTCCAAGACAAGCGCTACAAGAACAGGGAGTTACAGATTATGCAGATGTTGGATCATCCAAACATTGTTGCCCTAAAGCATTGCTTCTTCTCAACCACAGACAAAGAAGAGGTTTACTTGAACCTTGTACTTGAATTTGTTCCTGAGACGGTTAACCGCATTGCGAGGAACTATAGTAGAATCAACCAGCGGATGCCAATAACATATGTTAAACTTTATACCTATCAGATTTGCAGGGCACTCGCTTATATACATAATTGCATTGGAATCTGTCACCGTGATATCAAGCCTCAGAACTTACTTGTGAATCCACACACACATCAGCTGAAACTTTGTGATTTTGGGAGCGCAAAAGTGTTGGTGAAAGGAGAACCAAATGTTTCTTACATCTGCTCAAGATACTATCGTGCTCCAGAATTGATATTTGGTGCCACCGAGTACACAACAGCTATTGATATATGGTCTACAGGTTGTGTGATGGCTGAATTACTTCTTGGCCAGCCCTTGTTTCCTGGTGAAAGTGGAGTTGACCAACTAGTTGAGATCATTAAGGTTTTGGGGACTCCAACCAGGGAGGAGATAAAGTGCATGAATCCGAACTATACTGAATTTAAATTCCCACAGATAAAGCCTCATCCCTGGCACAAGGTATTTCAAAAACGCTTACCCCCAGAGGCGGTAGATCTTGTTTGTAGGTTTTTCCAGTATTCGCCGAATCTGCGATGCACTGCTTTGGAAGCTTGCATTCACCCTTTCTTTGATGAATTGAGAGACCCAAATACTCGTCTTCCTAATGGTCGCCCTCTTCCTCCTCTATTTAACTTTAAACCCCAGGGAAGTTCTGAGCTTCAAGGAATTCCACATGACATAGTCAACCGACTTATTCCAGAGCATGCCCGTAAGCAGAACTTATTCATGGCTTTGCACACCTAG

Protein Analysis

426

Amino Acids

48.1

Weight (kDa)

8.19

Isoelectric Point (pI)

35.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 85 - 368 3.3e-62 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 88 - 286 8.5e-25 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 773
AccI GTMKAC 1 cut(s) 809
AciI CCGC 3 cut(s) 502, 535, 1022
AclWI GGATC 1 cut(s) 405
AcoI YGGCCR 1 cut(s) 841
AcsI RAATTY 4 cut(s) 479, 953, 959, 1200
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 474, 785
AfeI AGCGCT 1 cut(s) 359
AfiI CCNNNNNNNGG 1 cut(s) 1021
AflIII ACRYGT 2 cut(s) 193, 262
AgsI TTSAA 6 cut(s) 42, 61, 466, 479, 1001, 1196
AhlI ACTAGT 1 cut(s) 880
AjnI CCWGG 5 cut(s) 297, 856, 914, 983, 1176
AjuI GAANNNNNNNTTGG 6 cut(s) 252, 284, 753, 785, 822, 854
AluBI AGCT 5 cut(s) 249, 670, 794, 1085, 1192
AluI AGCT 5 cut(s) 249, 670, 794, 1085, 1192
Alw21I GWGCWC 2 cut(s) 348, 757
Alw26I GTCTC 2 cut(s) 485, 1110
AlwI GGATC 1 cut(s) 405
Ama87I CYCGRG 1 cut(s) 104
Aor51HI AGCGCT 1 cut(s) 359
AoxI GGCC 2 cut(s) 13, 841
ApoI RAATTY 4 cut(s) 479, 953, 959, 1200
Asp700I GAANNNNTTC 5 cut(s) 56, 277, 483, 834, 1256
AspA2I CCTAGG 1 cut(s) 16
AspLEI GCGC 2 cut(s) 360, 695
AsuHPI GGTGA 4 cut(s) 611, 718, 872, 1085
AvaI CYCGRG 1 cut(s) 104
AvrII CCTAGG 1 cut(s) 16
BaeGI GKGCMC 1 cut(s) 586
BaeI ACNNNNGTAYC 2 cut(s) 736, 769
BalI TGGCCA 1 cut(s) 843
BanI GGYRCC 1 cut(s) 773
BbsI GAAGAC 1 cut(s) 1124
Bbv12I GWGCWC 2 cut(s) 348, 757
BccI CCATC 2 cut(s) 164, 817
BcgI CGANNNNNNTGC 2 cut(s) 568, 602
BciT130I CCWGG 5 cut(s) 299, 858, 916, 985, 1178
BcoDI GTCTC 2 cut(s) 485, 1110
BcuI ACTAGT 1 cut(s) 880
BfaI CTAG 5 cut(s) 17, 72, 234, 881, 1276
BfmI CTRYAG 2 cut(s) 517, 810
BfoI RGCGCY 1 cut(s) 361
BglII AGATCT 1 cut(s) 1027
BlnI CCTAGG 1 cut(s) 16
Bme1390I CCNGG 5 cut(s) 299, 858, 916, 985, 1178
BmeT110I CYCGRG 1 cut(s) 104
BmiI GGNNCC 1 cut(s) 775
BmrFI CCNGG 5 cut(s) 299, 858, 916, 985, 1178
BmsI GCATC 3 cut(s) 90, 528, 1058
BpiI GAAGAC 1 cut(s) 1124
BpmI CTGGAG 2 cut(s) 339, 741
BpuEI CTTGAG 1 cut(s) 724
BsaAI YACGTR 1 cut(s) 196
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 1110
BsaJI CCNNGG 5 cut(s) 16, 915, 983, 1176, 1177
BsaWI WCCGGW 1 cut(s) 157
BsaXI ACNNNNNCTCC 4 cut(s) 312, 342, 914, 944
Bsc4I CCNNNNNNNGG 1 cut(s) 1021
Bse1I ACTGG 3 cut(s) 280, 322, 1048
Bse3DI GCAATG 2 cut(s) 424, 504
BseBI CCWGG 5 cut(s) 299, 858, 916, 985, 1178
BseDI CCNNGG 5 cut(s) 16, 915, 983, 1176, 1177
BseGI GGATG 4 cut(s) 166, 400, 543, 979
BseLI CCNNNNNNNGG 1 cut(s) 1021
BseMI GCAATG 2 cut(s) 424, 504
BseMII CTCAG 3 cut(s) 480, 650, 1179
BseNI ACTGG 3 cut(s) 280, 322, 1048
BseRI GAGGAG 2 cut(s) 935, 1146
BseSI GKGCMC 1 cut(s) 586
BseYI CCCAGC 1 cut(s) 88
BshFI GGCC 2 cut(s) 15, 843
BshNI GGYRCC 1 cut(s) 773
BsiHKAI GWGCWC 2 cut(s) 348, 757
BsiHKCI CYCGRG 1 cut(s) 104
BsiSI CCGG 1 cut(s) 158
BslFI GGGAC 1 cut(s) 919
BslI CCNNNNNNNGG 1 cut(s) 1021
BsmAI GTCTC 2 cut(s) 485, 1110
BsmBI CGTCTC 1 cut(s) 485
BsmFI GGGAC 1 cut(s) 919
BsmI GAATGC 1 cut(s) 1089
BsnI GGCC 2 cut(s) 15, 843
Bso31I GGTCTC 1 cut(s) 1110
BsoBI CYCGRG 1 cut(s) 104
Bsp1286I GDGCHC 3 cut(s) 348, 586, 757
Bsp143I GATC 4 cut(s) 130, 397, 888, 1027
BspACI CCGC 3 cut(s) 502, 535, 1022
BspANI GGCC 2 cut(s) 15, 843
BspCNI CTCAG 3 cut(s) 481, 649, 1180
BspHI TCATGA 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 775
BspPI GGATC 1 cut(s) 405
BspT107I GGYRCC 1 cut(s) 773
BspTNI GGTCTC 1 cut(s) 1110
BsrDI GCAATG 2 cut(s) 424, 504
BsrI ACTGG 3 cut(s) 280, 322, 1048
BssECI CCNNGG 5 cut(s) 16, 915, 983, 1176, 1177
BssMI GATC 4 cut(s) 130, 397, 888, 1027
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 16
Bst2UI CCWGG 5 cut(s) 299, 858, 916, 985, 1178
Bst4CI ACNGT 4 cut(s) 211, 244, 496, 623
Bst6I CTCTTC 2 cut(s) 447, 1155
BstACI GRCGYC 1 cut(s) 5
BstBAI YACGTR 1 cut(s) 196
BstC8I GCNNGC 4 cut(s) 13, 845, 1087, 1239
BstDEI CTNAG 3 cut(s) 489, 636, 1188
BstF5I GGATG 4 cut(s) 166, 400, 543, 979
BstH2I RGCGCY 1 cut(s) 361
BstHHI GCGC 2 cut(s) 360, 695
BstKTI GATC 4 cut(s) 133, 400, 891, 1030
BstMAI GTCTC 2 cut(s) 485, 1110
BstMBI GATC 4 cut(s) 130, 397, 888, 1027
BstMWI GCNNNNNNNGC 3 cut(s) 124, 1063, 1082
BstNI CCWGG 5 cut(s) 299, 858, 916, 985, 1178
BstNSI RCATGY 2 cut(s) 266, 1241
BstSCI CCNGG 5 cut(s) 297, 856, 914, 983, 1176
BstSFI CTRYAG 2 cut(s) 517, 810
BstSLI GKGCMC 1 cut(s) 586
BstV2I GAAGAC 1 cut(s) 1124
BstX2I RGATCY 1 cut(s) 1027
BstYI RGATCY 1 cut(s) 1027
BsuRI GGCC 2 cut(s) 15, 843
BtgZI GCGATG 1 cut(s) 1081
BtsCI GGATG 4 cut(s) 166, 400, 543, 979
BtsI GCAGTG 1 cut(s) 1071
BtsIMutI CAGTG 1 cut(s) 1071
Cac8I GCNNGC 4 cut(s) 13, 845, 1087, 1239
CciI TCATGA 1 cut(s) 133
CfoI GCGC 2 cut(s) 360, 695
Csp6I GTAC 2 cut(s) 473, 784
CviAII CATG 6 cut(s) 134, 263, 934, 1208, 1238, 1261
CviQI GTAC 2 cut(s) 473, 784
DdeI CTNAG 3 cut(s) 489, 636, 1188
DpnI GATC 4 cut(s) 132, 399, 890, 1029
DpnII GATC 4 cut(s) 130, 397, 888, 1027
DraI TTTAAA 2 cut(s) 958, 1171
EaeI YGGCCR 1 cut(s) 841
Eam1104I CTCTTC 2 cut(s) 447, 1155
EarI CTCTTC 2 cut(s) 447, 1155
Eco130I CCWWGG 1 cut(s) 16
Eco31I GGTCTC 1 cut(s) 1110
Eco32I GATATC 1 cut(s) 628
Eco47III AGCGCT 1 cut(s) 359
Eco88I CYCGRG 1 cut(s) 104
EcoRI GAATTC 1 cut(s) 1200
EcoRII CCWGG 5 cut(s) 297, 856, 914, 983, 1176
EcoRV GATATC 1 cut(s) 628
EcoT14I CCWWGG 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 16
Esp3I CGTCTC 1 cut(s) 485
FaeI CATG 6 cut(s) 137, 266, 937, 1211, 1241, 1264
FalI AAGNNNNNCTT 4 cut(s) 413, 445, 1238, 1270
FaqI GGGAC 1 cut(s) 919
FatI CATG 6 cut(s) 133, 262, 933, 1207, 1237, 1260
FauNDI CATATG 1 cut(s) 550
FblI GTMKAC 1 cut(s) 809
FokI GGATG 4 cut(s) 173, 387, 550, 966
FspBI CTAG 5 cut(s) 17, 72, 234, 881, 1276
GlaI GCGC 2 cut(s) 359, 694
GsaI CCCAGC 1 cut(s) 92
GsuI CTGGAG 2 cut(s) 339, 741
HaeII RGCGCY 1 cut(s) 361
HaeIII GGCC 2 cut(s) 15, 843
HapII CCGG 1 cut(s) 158
HhaI GCGC 2 cut(s) 360, 695
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 6 cut(s) 137, 266, 937, 1211, 1241, 1264
Hin6I GCGC 2 cut(s) 358, 693
HinP1I GCGC 2 cut(s) 358, 693
HincII GTYRAC 3 cut(s) 499, 874, 1219
HindII GTYRAC 3 cut(s) 499, 874, 1219
HindIII AAGCTT 1 cut(s) 1083
HinfI GANTC 6 cut(s) 525, 612, 652, 907, 937, 1060
HpaI GTTAAC 1 cut(s) 499
HpaII CCGG 1 cut(s) 158
HphI GGTGA 4 cut(s) 611, 718, 872, 1085
Hpy166II GTNNAC 7 cut(s) 155, 460, 499, 786, 810, 874, 1219
Hpy188I TCNGA 5 cut(s) 259, 573, 639, 942, 1189
Hpy188III TCNNGA 9 cut(s) 61, 106, 134, 234, 337, 488, 741, 758, 1232
Hpy8I GTNNAC 7 cut(s) 155, 460, 499, 786, 810, 874, 1219
HpyAV CCTTC 1 cut(s) 334
HpyCH4III ACNGT 4 cut(s) 211, 244, 496, 623
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 8 cut(s) 118, 388, 579, 606, 933, 1071, 1089, 1270
HpyF10VI GCNNNNNNNGC 3 cut(s) 124, 1063, 1082
HpyF3I CTNAG 3 cut(s) 489, 636, 1188
HpySE526I ACGT 1 cut(s) 195
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 6 cut(s) 137, 266, 937, 1211, 1241, 1264
HspAI GCGC 2 cut(s) 358, 693
KspAI GTTAAC 1 cut(s) 499
Kzo9I GATC 4 cut(s) 130, 397, 888, 1027
LmnI GCTCC 3 cut(s) 351, 690, 760
LweI GCATC 3 cut(s) 90, 528, 1058
MaeI CTAG 5 cut(s) 17, 72, 234, 881, 1276
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 2 cut(s) 375, 617
MalI GATC 4 cut(s) 132, 399, 890, 1029
MboI GATC 4 cut(s) 130, 397, 888, 1027
MboII GAAGA 4 cut(s) 424, 464, 1124, 1142
MflI RGATCY 1 cut(s) 1027
MhlI GDGCHC 3 cut(s) 348, 586, 757
MlsI TGGCCA 1 cut(s) 843
MluCI AATT 9 cut(s) 165, 479, 601, 761, 830, 953, 959, 1109, 1200
MluNI TGGCCA 1 cut(s) 843
MlyI GAGTC 1 cut(s) 901
MmeI TCCRAC 3 cut(s) 250, 375, 935
Mox20I TGGCCA 1 cut(s) 843
MroXI GAANNNNTTC 5 cut(s) 56, 277, 483, 834, 1256
MscI TGGCCA 1 cut(s) 843
MseI TTAA 6 cut(s) 498, 555, 894, 957, 1164, 1170
Msp20I TGGCCA 1 cut(s) 843
MspA1I CMGCKG 2 cut(s) 535, 670
MspI CCGG 1 cut(s) 158
MspR9I CCNGG 5 cut(s) 299, 858, 916, 985, 1178
Mva1269I GAATGC 1 cut(s) 1089
MvaI CCWGG 5 cut(s) 299, 858, 916, 985, 1178
MwoI GCNNNNNNNGC 3 cut(s) 124, 1063, 1082
NdeI CATATG 1 cut(s) 550
NdeII GATC 4 cut(s) 130, 397, 888, 1027
NlaIII CATG 6 cut(s) 137, 266, 937, 1211, 1241, 1264
NlaIV GGNNCC 1 cut(s) 775
NmuCI GTSAC 1 cut(s) 617
NspI RCATGY 2 cut(s) 266, 1241
PaeI GCATGC 1 cut(s) 1241
PaeR7I CTCGAG 1 cut(s) 104
PagI TCATGA 1 cut(s) 133
PasI CCCWGGG 1 cut(s) 1177
PciI ACATGT 1 cut(s) 262
PctI GAATGC 1 cut(s) 1089
PdmI GAANNNNTTC 5 cut(s) 56, 277, 483, 834, 1256
PfeI GAWTC 5 cut(s) 525, 612, 652, 937, 1060
PflFI GACNNNGTC 1 cut(s) 1214
PleI GAGTC 1 cut(s) 901
PpsI GAGTC 1 cut(s) 901
Ppu21I YACGTR 1 cut(s) 196
PscI ACATGT 1 cut(s) 262
Psp6I CCWGG 5 cut(s) 297, 856, 914, 983, 1176
PspFI CCCAGC 1 cut(s) 88
PspGI CCWGG 5 cut(s) 297, 856, 914, 983, 1176
PspN4I GGNNCC 1 cut(s) 775
PsuI RGATCY 1 cut(s) 1027
PsyI GACNNNGTC 1 cut(s) 1214
PvuII CAGCTG 1 cut(s) 670
RsaI GTAC 2 cut(s) 474, 785
RsaNI GTAC 2 cut(s) 473, 784
SaqAI TTAA 6 cut(s) 498, 555, 894, 957, 1164, 1170
Sau3AI GATC 4 cut(s) 130, 397, 888, 1027
SchI GAGTC 1 cut(s) 901
ScrFI CCNGG 5 cut(s) 299, 858, 916, 985, 1178
SduI GDGCHC 3 cut(s) 348, 586, 757
SfaNI GCATC 3 cut(s) 90, 528, 1058
SfcI CTRYAG 2 cut(s) 517, 810
Sfr274I CTCGAG 1 cut(s) 104
SlaI CTCGAG 1 cut(s) 104
SmiI ATTTAAAT 1 cut(s) 958
SmlI CTYRAG 2 cut(s) 104, 739
SmoI CTYRAG 2 cut(s) 104, 739
SpeI ACTAGT 1 cut(s) 880
SphI GCATGC 1 cut(s) 1241
Sse9I AATT 9 cut(s) 165, 479, 601, 761, 830, 953, 959, 1109, 1200
SsiI CCGC 3 cut(s) 502, 535, 1022
SspMI CTAG 5 cut(s) 17, 72, 234, 881, 1276
StyD4I CCNGG 5 cut(s) 297, 856, 914, 983, 1176
StyI CCWWGG 1 cut(s) 16
SwaI ATTTAAAT 1 cut(s) 958
TaaI ACNGT 4 cut(s) 211, 244, 496, 623
TaiI ACGT 1 cut(s) 198
TaqI TCGA 2 cut(s) 105, 220
TasI AATT 9 cut(s) 165, 479, 601, 761, 830, 953, 959, 1109, 1200
TatI WGTACW 2 cut(s) 472, 783
TfiI GAWTC 5 cut(s) 525, 612, 652, 937, 1060
Tru1I TTAA 6 cut(s) 498, 555, 894, 957, 1164, 1170
Tru9I TTAA 6 cut(s) 498, 555, 894, 957, 1164, 1170
TscAI CASTG 1 cut(s) 1078
TseFI GTSAC 1 cut(s) 617
Tsp45I GTSAC 1 cut(s) 617
TspDTI ATGAA 3 cut(s) 950, 1122, 1249
TspRI CASTG 1 cut(s) 1078
Tth111I GACNNNGTC 1 cut(s) 1214
XapI RAATTY 4 cut(s) 479, 953, 959, 1200
XbaI TCTAGA 1 cut(s) 233
XceI RCATGY 2 cut(s) 266, 1241
XhoI CTCGAG 1 cut(s) 104
XmaJI CCTAGG 1 cut(s) 16
XmiI GTMKAC 1 cut(s) 809
XmnI GAANNNNTTC 5 cut(s) 56, 277, 483, 834, 1256
XspI CTAG 5 cut(s) 17, 72, 234, 881, 1276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.