Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006983

Physical Location & Seq

Genomic Coordinates Reverse (-)

3655673 .. 3658612

Gene Structure 2940 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G10940.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGACAAGTACGAGCTGGTGAAAGACATAGGTGCTGGGAATTTTGGAGTTGCCAGGCTCATGAAGGTCAAAAACTCTAAGGAACTTGTTGCCATGAAGTACATCGAGCGTGGTCCTAAGATTGATGAGAATGTGGCAAGAGAGATCATTAATCACAGATCACTTCGCCATCCGAATATAATCCGGTTCAAGGAGGTGGTGTTGACTCCAACCCATCTTGCCATTGCCATGGAATATGCTGCTGGTGGTGAACTATTCGAGCGTATATGCAGTGCTGGAAGATTTAGTGAGGATGAGGCGAGATATTTCTTCCAGCAGCTTATATCAGGTGTTAGCTATTGCCATGCTATGCAAATATGCCATAGAGATCTGAAGCTCGAGAATACGCTCTTGGATGGAAGTCCTGCTCCACGTCTGAAAATCTGTGATTTTGGTTATTCCAAGTCCTCTCTGCTGCACTCTAGGCCCAAATCAACAGTTGGAACTCCAGCATATATTGCACCTGAGGTCCTTTCTCGAAGAGAATATGATGGCAAGATGGCTGATGTATGGTCTTGTGGTGTGACTCTTTATGTCATGCTGGTTGGAGCATACCCATTTGAAGACCAGGAAGACCCCAAGAACTTCAGGAAAACAATACAAAAAATAATGGCTGTCCAGTACAAGATCCCGGACTACGTCCATATCTCACAGGATTGTAAAAATCTCCTTTCCCGTATATTTGTCGCCAATTCACTCAAGAGGATCACCATTGCAGAAATCAAGAAACATTCATGGTTCCTAAAGAATTTGCCAAGGGAACTCACAGAGACAGCTCAAGCTGCATATTTCAAGAAAGAGAACCCAACCTTCTCCCTTCAGACCGTTGAAGAGATCATGAAGATAGTGGCTGACGCCAAAACACCGCCTCCTGTTTCCCGATCCATCGGAGGTTTTGGCTGGGGAGGAAATGGGGATGCAGATGGAAAAGAGGAAGATGCAGAAGACGTGGAGGAGGAAGAGGAGGAGGTGGAAGAAGAGGAAGACGATGAGGATGAATACGATAAGACTGTAAAGGAAGTACACGCAAGTGGAGAAGTGAGAATAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009791 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022622 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0042742 GO:0043167 GO:0043168 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070300 GO:0071704 GO:0090696 GO:0098542 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase

Protein Analysis

363

Amino Acids

41.17

Weight (kDa)

5.4

Isoelectric Point (pI)

44.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 268	4.4e-67	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	5 - 264	3.9e-30	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10940 AT1G10940 AT1G60940 AT1G60940 AT5G08590 AT5G08590 AT5G63650
fragaria_vesca	FvH4_5g28850 FvH4_5g28850 FvH4_5g28850 FvH4_5g28850 FvH4_5g28850
malus_domestica	MD08G1236500.v1.1 MD15G1428500.v1.1
prunus_persica	Prupe.1G573300_v2.0.a1 Prupe.1G573300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0221191
rosa_laevigata	RLG00000002171
rosa_multiflora	Rmu_sc0000324.1_g000005
rosa_roxburghii	Rroxscaffold_3G00238620
rosa_rugosa	Rorug07G0201000
rosa_samantha	Rh7BG331000 Rh7CG357900 Rh7DG338600
rosa_wichuraiana	Rw7G028930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	905
AclWI	GGATC	3 cut(s)	661, 752, 915
AcsI	RAATTY	2 cut(s)	40, 787
AcuI	CTGAAG	3 cut(s)	392, 610, 842
AcyI	GRCGYC	1 cut(s)	894
AfaI	GTAC	4 cut(s)	11, 101, 662, 1062
AfiI	CCNNNNNNNGG	1 cut(s)	190
AgsI	TTSAA	4 cut(s)	190, 602, 832, 869
AjiI	CACGTC	2 cut(s)	413, 988
AjnI	CCWGG	2 cut(s)	53, 606
AjuI	GAANNNNNNNTTGG	2 cut(s)	374, 406
AleI	CACNNNNGTG	1 cut(s)	1068
AluBI	AGCT	6 cut(s)	16, 319, 336, 376, 815, 821
AluI	AGCT	6 cut(s)	16, 319, 336, 376, 815, 821
Alw26I	GTCTC	1 cut(s)	803
AlwI	GGATC	3 cut(s)	661, 752, 915
Ama87I	CYCGRG	1 cut(s)	377
AoxI	GGCC	1 cut(s)	464
ApeKI	GCWGC	4 cut(s)	239, 316, 454, 821
ApoI	RAATTY	2 cut(s)	40, 787
AseI	ATTAAT	1 cut(s)	150
AspS9I	GGNCC	3 cut(s)	113, 465, 508
AsuC2I	CCSGG	1 cut(s)	671
AsuHPI	GGTGA	3 cut(s)	31, 260, 739
AvaI	CYCGRG	1 cut(s)	377
AvaII	GGWCC	2 cut(s)	113, 508
AxyI	CCTNAGG	1 cut(s)	504
BbsI	GAAGAC	4 cut(s)	609, 618, 990, 1029
BbvI	GCAGC	4 cut(s)	226, 328, 441, 808
BccI	CCATC	7 cut(s)	177, 222, 389, 524, 532, 932, 956
BciT130I	CCWGG	2 cut(s)	55, 608
BcnI	CCSGG	1 cut(s)	671
BcoDI	GTCTC	1 cut(s)	803
BfaI	CTAG	1 cut(s)	462
BglII	AGATCT	1 cut(s)	367
BisI	GCNGC	4 cut(s)	240, 317, 455, 822
BlsI	GCNGC	4 cut(s)	241, 318, 456, 823
Bme1390I	CCNGG	3 cut(s)	55, 608, 671
Bme18I	GGWCC	2 cut(s)	113, 508
BmeT110I	CYCGRG	1 cut(s)	377
BmgBI	CACGTC	2 cut(s)	413, 988
BmgT120I	GGNCC	3 cut(s)	113, 465, 508
BmiI	GGNNCC	1 cut(s)	779
BmrFI	CCNGG	3 cut(s)	55, 608, 671
BmsI	GCATC	2 cut(s)	946, 967
BpiI	GAAGAC	4 cut(s)	609, 618, 990, 1029
BpmI	CTGGAG	1 cut(s)	471
BpuEI	CTTGAG	2 cut(s)	722, 801
BpuMI	CCSGG	1 cut(s)	671
BsaHI	GRCGYC	1 cut(s)	894
BsaJI	CCNNGG	2 cut(s)	228, 794
BsaWI	WCCGGW	1 cut(s)	183
BsaXI	ACNNNNNCTCC	4 cut(s)	185, 215, 892, 922
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse1I	ACTGG	1 cut(s)	658
Bse21I	CCTNAGG	1 cut(s)	504
Bse3DI	GCAATG	2 cut(s)	222, 750
BseBI	CCWGG	2 cut(s)	55, 608
BseDI	CCNNGG	2 cut(s)	228, 794
BseGI	GGATG	5 cut(s)	169, 298, 400, 961, 1039
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMI	GCAATG	2 cut(s)	222, 750
BseMII	CTCAG	1 cut(s)	495
BseNI	ACTGG	1 cut(s)	658
BseRI	GAGGAG	3 cut(s)	1007, 1016, 1019
BseXI	GCAGC	4 cut(s)	226, 328, 441, 808
BseYI	CCCAGC	2 cut(s)	35, 939
BsgI	GTGCAG	1 cut(s)	440
BshFI	GGCC	1 cut(s)	466
BsiHKCI	CYCGRG	1 cut(s)	377
BsiSI	CCGG	2 cut(s)	184, 671
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	1 cut(s)	803
BsnI	GGCC	1 cut(s)	466
BsoBI	CYCGRG	1 cut(s)	377
Bsp143I	GATC	7 cut(s)	144, 158, 367, 666, 744, 873, 920
Bsp19I	CCATGG	1 cut(s)	228
BspACI	CCGC	1 cut(s)	905
BspANI	GGCC	1 cut(s)	466
BspCNI	CTCAG	1 cut(s)	496
BspHI	TCATGA	2 cut(s)	60, 876
BspLI	GGNNCC	1 cut(s)	779
BspPI	GGATC	3 cut(s)	661, 752, 915
BsrDI	GCAATG	2 cut(s)	222, 750
BsrI	ACTGG	1 cut(s)	658
BssECI	CCNNGG	2 cut(s)	228, 794
BssMI	GATC	7 cut(s)	144, 158, 367, 666, 744, 873, 920
BssNI	GRCGYC	1 cut(s)	894
BssT1I	CCWWGG	2 cut(s)	228, 794
Bst2UI	CCWGG	2 cut(s)	55, 608
Bst4CI	ACNGT	3 cut(s)	478, 865, 1051
Bst6I	CTCTTC	4 cut(s)	514, 864, 993, 1011
BstACI	GRCGYC	1 cut(s)	894
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstDEI	CTNAG	3 cut(s)	78, 117, 504
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	5 cut(s)	169, 298, 400, 961, 1039
BstKTI	GATC	7 cut(s)	147, 161, 370, 669, 747, 876, 923
BstMAI	GTCTC	1 cut(s)	803
BstMBI	GATC	7 cut(s)	144, 158, 367, 666, 744, 873, 920
BstMWI	GCNNNNNNNGC	3 cut(s)	463, 497, 821
BstNI	CCWGG	2 cut(s)	55, 608
BstSCI	CCNGG	3 cut(s)	53, 606, 669
BstV1I	GCAGC	4 cut(s)	226, 328, 441, 808
BstV2I	GAAGAC	4 cut(s)	609, 618, 990, 1029
BstX2I	RGATCY	2 cut(s)	367, 666
BstXI	CCANNNNNNTGG	1 cut(s)	229
BstYI	RGATCY	2 cut(s)	367, 666
Bsu36I	CCTNAGG	1 cut(s)	504
BsuRI	GGCC	1 cut(s)	466
BtgI	CCRYGG	1 cut(s)	228
BtrI	CACGTC	2 cut(s)	413, 988
BtsCI	GGATG	5 cut(s)	169, 298, 400, 961, 1039
BtsI	GCAGTG	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	277
CciI	TCATGA	2 cut(s)	60, 876
Cfr13I	GGNCC	3 cut(s)	113, 465, 508
CseI	GACGC	1 cut(s)	902
Csp6I	GTAC	4 cut(s)	10, 100, 661, 1061
CviAII	CATG	7 cut(s)	61, 94, 229, 344, 577, 774, 877
CviQI	GTAC	4 cut(s)	10, 100, 661, 1061
DdeI	CTNAG	3 cut(s)	78, 117, 504
DpnI	GATC	7 cut(s)	146, 160, 369, 668, 746, 875, 922
DpnII	GATC	7 cut(s)	144, 158, 367, 666, 744, 873, 920
Eam1104I	CTCTTC	4 cut(s)	514, 864, 993, 1011
EarI	CTCTTC	4 cut(s)	514, 864, 993, 1011
Eco130I	CCWWGG	2 cut(s)	228, 794
Eco47I	GGWCC	2 cut(s)	113, 508
Eco57I	CTGAAG	3 cut(s)	392, 610, 842
Eco81I	CCTNAGG	1 cut(s)	504
Eco88I	CYCGRG	1 cut(s)	377
EcoO109I	RGGNCCY	1 cut(s)	508
EcoRII	CCWGG	2 cut(s)	53, 606
EcoT14I	CCWWGG	2 cut(s)	228, 794
ErhI	CCWWGG	2 cut(s)	228, 794
FaeI	CATG	7 cut(s)	64, 97, 232, 347, 580, 777, 880
FatI	CATG	7 cut(s)	60, 93, 228, 343, 576, 773, 876
Fnu4HI	GCNGC	4 cut(s)	240, 317, 455, 822
FokI	GGATG	5 cut(s)	156, 305, 407, 968, 1046
Fsp4HI	GCNGC	4 cut(s)	240, 317, 455, 822
FspBI	CTAG	1 cut(s)	462
GluI	GCNGC	4 cut(s)	240, 317, 455, 822
GsaI	CCCAGC	2 cut(s)	39, 943
GsuI	CTGGAG	1 cut(s)	471
HaeIII	GGCC	1 cut(s)	466
HapII	CCGG	2 cut(s)	184, 671
HgaI	GACGC	1 cut(s)	902
Hin1I	GRCGYC	1 cut(s)	894
Hin1II	CATG	7 cut(s)	64, 97, 232, 347, 580, 777, 880
HincII	GTYRAC	1 cut(s)	204
HindII	GTYRAC	1 cut(s)	204
HinfI	GANTC	2 cut(s)	205, 565
HpaII	CCGG	2 cut(s)	184, 671
HphI	GGTGA	3 cut(s)	31, 260, 739
Hpy166II	GTNNAC	3 cut(s)	204, 251, 1063
Hpy188I	TCNGA	5 cut(s)	174, 372, 417, 861, 929
Hpy188III	TCNNGA	9 cut(s)	61, 379, 516, 628, 739, 763, 832, 877, 918
Hpy8I	GTNNAC	3 cut(s)	204, 251, 1063
HpyAV	CCTTC	3 cut(s)	58, 859, 866
HpyCH4III	ACNGT	3 cut(s)	478, 865, 1051
HpyCH4IV	ACGT	3 cut(s)	412, 678, 987
HpyCH4V	TGCA	8 cut(s)	270, 352, 457, 500, 755, 824, 959, 980
HpyF10VI	GCNNNNNNNGC	3 cut(s)	463, 497, 821
HpyF3I	CTNAG	3 cut(s)	78, 117, 504
HpySE526I	ACGT	3 cut(s)	412, 678, 987
Hsp92I	GRCGYC	1 cut(s)	894
Hsp92II	CATG	7 cut(s)	64, 97, 232, 347, 580, 777, 880
Kzo9I	GATC	7 cut(s)	144, 158, 367, 666, 744, 873, 920
LmnI	GCTCC	2 cut(s)	412, 587
Lsp1109I	GCAGC	4 cut(s)	226, 328, 441, 808
LweI	GCATC	2 cut(s)	946, 967
MaeI	CTAG	1 cut(s)	462
MaeII	ACGT	3 cut(s)	412, 678, 987
MaeIII	GTNAC	1 cut(s)	562
MalI	GATC	7 cut(s)	146, 160, 369, 668, 746, 875, 922
MboI	GATC	7 cut(s)	144, 158, 367, 666, 744, 873, 920
MflI	RGATCY	2 cut(s)	367, 666
MluCI	AATT	3 cut(s)	40, 730, 787
MlyI	GAGTC	2 cut(s)	199, 559
MmeI	TCCRAC	3 cut(s)	233, 460, 565
MseI	TTAA	1 cut(s)	150
MslI	CAYNNNNRTG	2 cut(s)	227, 1068
MspI	CCGG	2 cut(s)	184, 671
MspR9I	CCNGG	3 cut(s)	55, 608, 671
MvaI	CCWGG	2 cut(s)	55, 608
MwoI	GCNNNNNNNGC	3 cut(s)	463, 497, 821
NciI	CCSGG	1 cut(s)	671
NcoI	CCATGG	1 cut(s)	228
NdeII	GATC	7 cut(s)	144, 158, 367, 666, 744, 873, 920
NlaIII	CATG	7 cut(s)	64, 97, 232, 347, 580, 777, 880
NlaIV	GGNNCC	1 cut(s)	779
NmuCI	GTSAC	1 cut(s)	562
OliI	CACNNNNGTG	1 cut(s)	1068
PaeR7I	CTCGAG	1 cut(s)	377
PagI	TCATGA	2 cut(s)	60, 876
PflFI	GACNNNGTC	1 cut(s)	677
PfoI	TCCNGGA	1 cut(s)	669
PkrI	GCNGC	4 cut(s)	241, 318, 456, 823
PleI	GAGTC	2 cut(s)	199, 559
PpsI	GAGTC	2 cut(s)	199, 559
PpuMI	RGGWCCY	1 cut(s)	508
PshBI	ATTAAT	1 cut(s)	150
Psp5II	RGGWCCY	1 cut(s)	508
Psp6I	CCWGG	2 cut(s)	53, 606
PspFI	CCCAGC	2 cut(s)	35, 939
PspGI	CCWGG	2 cut(s)	53, 606
PspN4I	GGNNCC	1 cut(s)	779
PspPI	GGNCC	3 cut(s)	113, 465, 508
PspPPI	RGGWCCY	1 cut(s)	508
PsuI	RGATCY	2 cut(s)	367, 666
PsyI	GACNNNGTC	1 cut(s)	677
RsaI	GTAC	4 cut(s)	11, 101, 662, 1062
RsaNI	GTAC	4 cut(s)	10, 100, 661, 1061
RseI	CAYNNNNRTG	2 cut(s)	227, 1068
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	4 cut(s)	240, 317, 455, 822
Sau3AI	GATC	7 cut(s)	144, 158, 367, 666, 744, 873, 920
Sau96I	GGNCC	3 cut(s)	113, 465, 508
SchI	GAGTC	2 cut(s)	199, 559
ScrFI	CCNGG	3 cut(s)	55, 608, 671
SfaNI	GCATC	2 cut(s)	946, 967
Sfr274I	CTCGAG	1 cut(s)	377
SinI	GGWCC	2 cut(s)	113, 508
SlaI	CTCGAG	1 cut(s)	377
SmiMI	CAYNNNNRTG	2 cut(s)	227, 1068
SmlI	CTYRAG	3 cut(s)	377, 737, 816
SmoI	CTYRAG	3 cut(s)	377, 737, 816
Sse9I	AATT	3 cut(s)	40, 730, 787
SsiI	CCGC	1 cut(s)	905
SspMI	CTAG	1 cut(s)	462
StyD4I	CCNGG	3 cut(s)	53, 606, 669
StyI	CCWWGG	2 cut(s)	228, 794
TaaI	ACNGT	3 cut(s)	478, 865, 1051
TaiI	ACGT	3 cut(s)	415, 681, 990
TaqI	TCGA	4 cut(s)	105, 258, 378, 517
TasI	AATT	3 cut(s)	40, 730, 787
TatI	WGTACW	3 cut(s)	99, 660, 1060
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TscAI	CASTG	1 cut(s)	277
TseFI	GTSAC	1 cut(s)	562
TseI	GCWGC	4 cut(s)	239, 316, 454, 821
Tsp45I	GTSAC	1 cut(s)	562
TspDTI	ATGAA	5 cut(s)	77, 110, 762, 893, 1050
TspRI	CASTG	1 cut(s)	277
Tth111I	GACNNNGTC	1 cut(s)	677
VpaK11BI	GGWCC	2 cut(s)	113, 508
VspI	ATTAAT	1 cut(s)	150
XapI	RAATTY	2 cut(s)	40, 787
XhoI	CTCGAG	1 cut(s)	377
XspI	CTAG	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.