Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0006983

Physical Location & Seq

Genomic Coordinates Forward (+)

39833207 .. 39836696

Gene Structure 3490 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G028930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGAAAAGTATGAGCTTGTGAAGGATATAGGATCTGGCAATTTCGGGGTGGCCAGGCTTATGAGGAACAAAGAGACCAAAGAGCTCGTCGCCATGAAATACATCGACCGCGGCCTCAAGATTGATGAGAATGTTGCCAGAGAAATCATCAACCACAGATCACTTCGCCATCCAAACATTATTCGATTCAAGGAGGTGGTTTTGACTCCTACACATCTTGCTATTGTTATGGAGTATGCCGCAGGCGGAGAACTCTTTGAGCGAATTTGCAATGCTGGAAGGTTCAGCGAAGATGAGGCTAGATATTTTTTCCAGCAGCTTATCTCAGGAGTTAGCTACTGTCATTCTCTGCAAATATGCCATCGAGATTTGAAGCTGGAGAATACCTTGCTGGATGGCAGCCCAGCTCCACGCCTGAAAATTTGTGATTTCGGTTATTCTAAGTCATCCTTGCTGCATTCAAGACCAAAATCAACTGTGGGAACTCCAGCGTATATTGCACCTGAGGTTCTTTCTCGAAGAGAGTATGACGGCAAGATGGCAGATGTATGGTCTTGTGGGGTGACCTTATATGTTATGCTGGTGGGAGCATATCCATTTGAGGACCAAGAAGATCCAAAGAATTTCAGAAAAACCATTAATCGAATAATGGCTGTTCAGTACAAGATCCCAGACTATGTTCACATATCTCAAGATTGTAGGCATCTCCTCTCGCGCATCTTTGTTGCAAATCCAGCAAGGAGGATCAGCATTAAGGAAATCAAGAACCACCCATGGTTTTTGAAGAACTTGCCGAGAGAGCTCACAGAAGCAGCTCAAACCATGTACTACAGAAAAGAAAACCCAACCTTTTCCCTCCAAAGTGTTGAAGACATCATGAAGATAGTGGAAGAAGCCAAAAATCCTCCCCCAGTTTCCCGATCGGTTGGAGGCTTTGGCTGGGGAGGAGAAGAAGATGATGGCGATGCAAAGGATGATGTAGAGGGTGAGGAGGAAGAAGACGAGTATGAAAAGAGAGTGAAAGAAGCACATCAAAGTGGGGAAGTACGTGTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009791 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022622 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0042742 GO:0043167 GO:0043168 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070300 GO:0071704 GO:0090696 GO:0098542 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase

Protein Analysis

352

Amino Acids

40.37

Weight (kDa)

6.12

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 260	8.8e-73	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	5 - 256	2.1e-32	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10940 AT1G10940 AT1G60940 AT1G60940 AT5G08590 AT5G08590 AT5G63650
fragaria_vesca	FvH4_5g28850 FvH4_5g28850 FvH4_5g28850 FvH4_5g28850 FvH4_5g28850
malus_domestica	MD08G1236500.v1.1 MD15G1428500.v1.1
prunus_persica	Prupe.1G573300_v2.0.a1 Prupe.1G573300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0221191
rosa_laevigata	RLG00000002171
rosa_multiflora	Rmu_sc0000324.1_g000005
rosa_roxburghii	Rroxscaffold_3G00238620
rosa_rugosa	Rorug07G0201000
rosa_samantha	Rh7BG331000 Rh7CG357900 Rh7DG338600
rosa_wichuraiana	Rw7G028930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	111, 715
AciI	CCGC	4 cut(s)	109, 111, 240, 246
AclWI	GGATC	4 cut(s)	40, 608, 661, 752
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	3 cut(s)	264, 420, 622
AfaI	GTAC	3 cut(s)	662, 827, 1047
AflIII	ACRYGT	1 cut(s)	1048
AgsI	TTSAA	5 cut(s)	190, 373, 462, 784, 869
AjnI	CCWGG	1 cut(s)	53
AluBI	AGCT	8 cut(s)	16, 85, 319, 336, 376, 407, 802, 815
AluI	AGCT	8 cut(s)	16, 85, 319, 336, 376, 407, 802, 815
Alw21I	GWGCWC	2 cut(s)	87, 804
Alw26I	GTCTC	1 cut(s)	68
AlwI	GGATC	4 cut(s)	40, 608, 661, 752
AoxI	GGCC	2 cut(s)	51, 112
ApeKI	GCWGC	4 cut(s)	316, 399, 454, 812
ApoI	RAATTY	3 cut(s)	264, 420, 622
ArsI	GACNNNNNNTTYG	2 cut(s)	72, 104
AseI	ATTAAT	1 cut(s)	639
AspLEI	GCGC	1 cut(s)	717
AspS9I	GGNCC	1 cut(s)	604
AsuHPI	GGTGA	2 cut(s)	574, 998
AvaII	GGWCC	1 cut(s)	604
AxyI	CCTNAGG	1 cut(s)	504
BalI	TGGCCA	1 cut(s)	53
BanII	GRGCYC	2 cut(s)	87, 804
BbsI	GAAGAC	2 cut(s)	876, 1005
Bbv12I	GWGCWC	2 cut(s)	87, 804
BbvI	GCAGC	4 cut(s)	328, 411, 441, 824
BccI	CCATC	5 cut(s)	177, 369, 389, 532, 953
BceAI	ACGGC	1 cut(s)	547
BciT130I	CCWGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	68
BfaI	CTAG	1 cut(s)	300
BfmI	CTRYAG	1 cut(s)	829
BisI	GCNGC	6 cut(s)	112, 240, 317, 400, 455, 813
BlsI	GCNGC	6 cut(s)	113, 241, 318, 401, 456, 814
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	604
BmgT120I	GGNCC	1 cut(s)	604
BmrFI	CCNGG	1 cut(s)	55
BmrI	ACTGGG	1 cut(s)	905
BmsI	GCATC	3 cut(s)	712, 726, 955
BmuI	ACTGGG	1 cut(s)	905
BpiI	GAAGAC	2 cut(s)	876, 1005
BpmI	CTGGAG	2 cut(s)	398, 471
BpuEI	CTTGAG	2 cut(s)	101, 675
BsaAI	YACGTR	1 cut(s)	1049
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	2 cut(s)	109, 773
Bse1I	ACTGG	1 cut(s)	911
Bse21I	CCTNAGG	1 cut(s)	504
Bse3DI	GCAATG	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	55
BseDI	CCNNGG	2 cut(s)	109, 773
BseGI	GGATG	4 cut(s)	169, 400, 446, 979
BseMI	GCAATG	1 cut(s)	277
BseMII	CTCAG	2 cut(s)	339, 495
BseNI	ACTGG	1 cut(s)	911
BseRI	GAGGAG	3 cut(s)	698, 960, 1004
BseXI	GCAGC	4 cut(s)	328, 411, 441, 824
BseYI	CCCAGC	2 cut(s)	403, 939
Bsh1236I	CGCG	2 cut(s)	111, 715
Bsh1285I	CGRYCG	2 cut(s)	109, 923
BshFI	GGCC	2 cut(s)	53, 114
BsiEI	CGRYCG	2 cut(s)	109, 923
BsiHKAI	GWGCWC	2 cut(s)	87, 804
BsmAI	GTCTC	1 cut(s)	68
BsmI	GAATGC	1 cut(s)	457
BsnI	GGCC	2 cut(s)	53, 114
Bso31I	GGTCTC	1 cut(s)	68
Bsp1286I	GDGCHC	2 cut(s)	87, 804
Bsp143I	GATC	6 cut(s)	32, 158, 613, 666, 744, 920
Bsp19I	CCATGG	1 cut(s)	773
BspACI	CCGC	4 cut(s)	109, 111, 240, 246
BspANI	GGCC	2 cut(s)	53, 114
BspCNI	CTCAG	2 cut(s)	338, 496
BspFNI	CGCG	2 cut(s)	111, 715
BspHI	TCATGA	1 cut(s)	876
BspPI	GGATC	4 cut(s)	40, 608, 661, 752
BspTNI	GGTCTC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	911
BssECI	CCNNGG	2 cut(s)	109, 773
BssMI	GATC	6 cut(s)	32, 158, 613, 666, 744, 920
BssT1I	CCWWGG	1 cut(s)	773
Bst2UI	CCWGG	1 cut(s)	55
Bst4CI	ACNGT	2 cut(s)	341, 478
Bst6I	CTCTTC	1 cut(s)	514
BstBAI	YACGTR	1 cut(s)	1049
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	3 cut(s)	325, 441, 504
BstDSI	CCRYGG	2 cut(s)	109, 773
BstEII	GGTNACC	1 cut(s)	562
BstF5I	GGATG	4 cut(s)	169, 400, 446, 979
BstFNI	CGCG	2 cut(s)	111, 715
BstHHI	GCGC	1 cut(s)	717
BstKTI	GATC	6 cut(s)	35, 161, 616, 669, 747, 923
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	6 cut(s)	32, 158, 613, 666, 744, 920
BstMCI	CGRYCG	2 cut(s)	109, 923
BstMWI	GCNNNNNNNGC	3 cut(s)	497, 734, 799
BstNI	CCWGG	1 cut(s)	55
BstPI	GGTNACC	1 cut(s)	562
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	1 cut(s)	829
BstUI	CGCG	2 cut(s)	111, 715
BstV1I	GCAGC	4 cut(s)	328, 411, 441, 824
BstV2I	GAAGAC	2 cut(s)	876, 1005
BstX2I	RGATCY	3 cut(s)	32, 613, 666
BstYI	RGATCY	3 cut(s)	32, 613, 666
Bsu36I	CCTNAGG	1 cut(s)	504
BsuRI	GGCC	2 cut(s)	53, 114
BtgI	CCRYGG	2 cut(s)	109, 773
BtgZI	GCGATG	1 cut(s)	978
BtsCI	GGATG	4 cut(s)	169, 400, 446, 979
Cac8I	GCNNGC	1 cut(s)	244
CciI	TCATGA	1 cut(s)	876
CfoI	GCGC	1 cut(s)	717
Cfr13I	GGNCC	1 cut(s)	604
Cfr42I	CCGCGG	1 cut(s)	112
Csp6I	GTAC	3 cut(s)	661, 826, 1046
CviAII	CATG	4 cut(s)	94, 774, 823, 877
CviQI	GTAC	3 cut(s)	661, 826, 1046
DdeI	CTNAG	3 cut(s)	325, 441, 504
DpnI	GATC	6 cut(s)	34, 160, 615, 668, 746, 922
DpnII	GATC	6 cut(s)	32, 158, 613, 666, 744, 920
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	514
EarI	CTCTTC	1 cut(s)	514
EciI	GGCGGA	1 cut(s)	261
Ecl136II	GAGCTC	2 cut(s)	85, 802
Eco130I	CCWWGG	1 cut(s)	773
Eco24I	GRGCYC	2 cut(s)	87, 804
Eco31I	GGTCTC	1 cut(s)	68
Eco47I	GGWCC	1 cut(s)	604
Eco53kI	GAGCTC	2 cut(s)	85, 802
Eco81I	CCTNAGG	1 cut(s)	504
Eco91I	GGTNACC	1 cut(s)	562
EcoICRI	GAGCTC	2 cut(s)	85, 802
EcoO65I	GGTNACC	1 cut(s)	562
EcoRII	CCWGG	1 cut(s)	53
EcoT14I	CCWWGG	1 cut(s)	773
EcoT38I	GRGCYC	2 cut(s)	87, 804
ErhI	CCWWGG	1 cut(s)	773
FaeI	CATG	4 cut(s)	97, 777, 826, 880
FalI	AAGNNNNNCTT	2 cut(s)	434, 466
FatI	CATG	4 cut(s)	93, 773, 822, 876
Fnu4HI	GCNGC	6 cut(s)	112, 240, 317, 400, 455, 813
FokI	GGATG	4 cut(s)	156, 407, 433, 986
FriOI	GRGCYC	2 cut(s)	87, 804
Fsp4HI	GCNGC	6 cut(s)	112, 240, 317, 400, 455, 813
FspBI	CTAG	1 cut(s)	300
GlaI	GCGC	1 cut(s)	716
GluI	GCNGC	6 cut(s)	112, 240, 317, 400, 455, 813
GsaI	CCCAGC	2 cut(s)	407, 943
GsuI	CTGGAG	2 cut(s)	398, 471
HaeIII	GGCC	2 cut(s)	53, 114
HhaI	GCGC	1 cut(s)	717
Hin1II	CATG	4 cut(s)	97, 777, 826, 880
Hin6I	GCGC	1 cut(s)	715
HinP1I	GCGC	1 cut(s)	715
HinfI	GANTC	2 cut(s)	186, 205
HphI	GGTGA	2 cut(s)	574, 998
Hpy166II	GTNNAC	1 cut(s)	682
Hpy188I	TCNGA	2 cut(s)	629, 1058
Hpy188III	TCNNGA	9 cut(s)	118, 327, 365, 462, 516, 692, 763, 877, 918
Hpy8I	GTNNAC	1 cut(s)	682
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	2 cut(s)	16, 273
HpyCH4III	ACNGT	2 cut(s)	341, 478
HpyCH4IV	ACGT	1 cut(s)	1048
HpyCH4V	TGCA	6 cut(s)	270, 352, 457, 500, 728, 968
HpyF10VI	GCNNNNNNNGC	3 cut(s)	497, 734, 799
HpyF3I	CTNAG	3 cut(s)	325, 441, 504
HpySE526I	ACGT	1 cut(s)	1048
Hsp92II	CATG	4 cut(s)	97, 777, 826, 880
HspAI	GCGC	1 cut(s)	715
KspI	CCGCGG	1 cut(s)	112
Kzo9I	GATC	6 cut(s)	32, 158, 613, 666, 744, 920
LmnI	GCTCC	2 cut(s)	412, 587
Lsp1109I	GCAGC	4 cut(s)	328, 411, 441, 824
LweI	GCATC	3 cut(s)	712, 726, 955
MaeI	CTAG	1 cut(s)	300
MaeII	ACGT	1 cut(s)	1048
MaeIII	GTNAC	1 cut(s)	562
MalI	GATC	6 cut(s)	34, 160, 615, 668, 746, 922
MboI	GATC	6 cut(s)	32, 158, 613, 666, 744, 920
MflI	RGATCY	3 cut(s)	32, 613, 666
MhlI	GDGCHC	2 cut(s)	87, 804
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	4 cut(s)	40, 264, 420, 622
MluNI	TGGCCA	1 cut(s)	53
MlyI	GAGTC	1 cut(s)	199
MmeI	TCCRAC	1 cut(s)	907
Mox20I	TGGCCA	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	53
MseI	TTAA	2 cut(s)	639, 753
MslI	CAYNNNNRTG	1 cut(s)	1035
Msp20I	TGGCCA	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	55
Mva1269I	GAATGC	1 cut(s)	457
MvaI	CCWGG	1 cut(s)	55
MvnI	CGCG	2 cut(s)	111, 715
MwoI	GCNNNNNNNGC	3 cut(s)	497, 734, 799
NcoI	CCATGG	1 cut(s)	773
NdeII	GATC	6 cut(s)	32, 158, 613, 666, 744, 920
NlaIII	CATG	4 cut(s)	97, 777, 826, 880
NmeAIII	GCCGAG	1 cut(s)	819
NmuCI	GTSAC	1 cut(s)	562
PagI	TCATGA	1 cut(s)	876
PctI	GAATGC	1 cut(s)	457
PfeI	GAWTC	1 cut(s)	186
PkrI	GCNGC	6 cut(s)	113, 241, 318, 401, 456, 814
Ple19I	CGATCG	1 cut(s)	923
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
Ppu21I	YACGTR	1 cut(s)	1049
PshBI	ATTAAT	1 cut(s)	639
Psp124BI	GAGCTC	2 cut(s)	87, 804
Psp6I	CCWGG	1 cut(s)	53
PspEI	GGTNACC	1 cut(s)	562
PspFI	CCCAGC	2 cut(s)	403, 939
PspGI	CCWGG	1 cut(s)	53
PspPI	GGNCC	1 cut(s)	604
PsuI	RGATCY	3 cut(s)	32, 613, 666
PvuI	CGATCG	1 cut(s)	923
RsaI	GTAC	3 cut(s)	662, 827, 1047
RsaNI	GTAC	3 cut(s)	661, 826, 1046
RseI	CAYNNNNRTG	1 cut(s)	1035
SacI	GAGCTC	2 cut(s)	87, 804
SacII	CCGCGG	1 cut(s)	112
SaqAI	TTAA	2 cut(s)	639, 753
SatI	GCNGC	6 cut(s)	112, 240, 317, 400, 455, 813
Sau3AI	GATC	6 cut(s)	32, 158, 613, 666, 744, 920
Sau96I	GGNCC	1 cut(s)	604
SchI	GAGTC	1 cut(s)	199
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	2 cut(s)	87, 804
SfaNI	GCATC	3 cut(s)	712, 726, 955
SfcI	CTRYAG	1 cut(s)	829
Sfr303I	CCGCGG	1 cut(s)	112
SgrBI	CCGCGG	1 cut(s)	112
SinI	GGWCC	1 cut(s)	604
SmiMI	CAYNNNNRTG	1 cut(s)	1035
SmlI	CTYRAG	2 cut(s)	116, 690
SmoI	CTYRAG	2 cut(s)	116, 690
Sse9I	AATT	4 cut(s)	40, 264, 420, 622
SsiI	CCGC	4 cut(s)	109, 111, 240, 246
SspMI	CTAG	1 cut(s)	300
SstI	GAGCTC	2 cut(s)	87, 804
StyD4I	CCNGG	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	773
TaaI	ACNGT	2 cut(s)	341, 478
TaiI	ACGT	1 cut(s)	1051
TaqI	TCGA	5 cut(s)	105, 184, 364, 517, 643
TasI	AATT	4 cut(s)	40, 264, 420, 622
TatI	WGTACW	2 cut(s)	660, 825
TauI	GCSGC	2 cut(s)	114, 242
TfiI	GAWTC	1 cut(s)	186
Tru1I	TTAA	2 cut(s)	639, 753
Tru9I	TTAA	2 cut(s)	639, 753
TseFI	GTSAC	1 cut(s)	562
TseI	GCWGC	4 cut(s)	316, 399, 454, 812
Tsp45I	GTSAC	1 cut(s)	562
TspDTI	ATGAA	3 cut(s)	110, 893, 1023
VpaK11BI	GGWCC	1 cut(s)	604
VspI	ATTAAT	1 cut(s)	639
XapI	RAATTY	3 cut(s)	264, 420, 622
XspI	CTAG	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.