Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006983

Physical Location & Seq

Genomic Coordinates Reverse (-)

46728241 .. 46732676

Gene Structure 4436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G573300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGAAAAGTACGAGCTTGTGAAGGATATTGGATCTGGGAATTTTGGGGTGGCGAGGCTGATGAGGAACAAAGAAACCAAAGAGCTCGTCGCCATGAAATACATCGACCGTGGTCACAAGATTGATGAGAATGTGGCAAGAGAAATCATAAACCACAGGTCGCTTCGCCATCCAAACATCATTCGGTTCAGGGAGGTAGTTTTGACTCCTACACATCTCGCTATTGTGATGGAGTACGCTGCAGGTGGAGAACTTTTTGAGCGAATTTGCAATGCAGGACGGTTCAGTGAGGATGAGGCTAGATATTTTTTCCAGCAGCTTATCTCGGGAGTTAGCTACTGTCATTCTCTGCAAATATGCCACCGAGATTTGAAGCTGGAGAATACCTTGCTGGATGGCAGCCCGGCTCCACGCCTGAAAATTTGTGATTTCGGTTATTCTAAGTCATCATTGCTGCATTCAAGGCCTAAATCGACTGTGGGTACTCCAGCATATATTGCTCCTGAGGTTCTTTCTCGAAGAGAGTATGATGGCAAGCTGGCAGATGTATGGTCATGTGGGGTGACCCTATATGTTATGCTGGTGGGAGCATATCCTTTTGAAGACCAAGAAGATCCAAAGAATTTCAGGAAAACCATTAATCGAATAATGGCCGTTCAGTACAAGATTCCTGACTATGTTCACATATCTCAAGATTGTAGGCATCTGCTCTCTCGCATCTTTGTTGCAAATCCAGCAAGGAGGATCACCATTAAAGAAATCAAGAACCATCCATGGTTTTTGAAGAACTTGCCTAGAGAGCTTACGGAAGCAGCTCAAACCATCTACTACAGAAAAGAAAACCCAACCTTTTCCCTCCAAAGTATCGAAGACATCATGAAGATAGTGGAAGAAGCCAAAATTCCTCCTCCAGTTTCCCGATCGATTGGAAGCTTTGGGTGGGGAGAAGAAGATGGTGATACAAAGGAAGAGGTAGAAGGCGAGGAGGAGGAAGACGAGTATGAAAAGACAGTCAAAGAAATACATGCAAGTGGTGAAGTACGTGTTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009791 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022622 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0042742 GO:0043167 GO:0043168 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070300 GO:0071704 GO:0090696 GO:0098542 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase

Protein Analysis

351

Amino Acids

40.26

Weight (kDa)

6.17

Isoelectric Point (pI)

45.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10940 AT1G10940 AT1G60940 AT1G60940 AT5G08590 AT5G08590 AT5G63650
fragaria_vesca	FvH4_5g28850 FvH4_5g28850 FvH4_5g28850 FvH4_5g28850 FvH4_5g28850
malus_domestica	MD08G1236500.v1.1 MD15G1428500.v1.1
prunus_persica	Prupe.1G573300_v2.0.a1 Prupe.1G573300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0221191
rosa_laevigata	RLG00000002171
rosa_multiflora	Rmu_sc0000324.1_g000005
rosa_roxburghii	Rroxscaffold_3G00238620
rosa_rugosa	Rorug07G0201000
rosa_samantha	Rh7BG331000 Rh7CG357900 Rh7DG338600
rosa_wichuraiana	Rw7G028930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	233
Acc36I	ACCTGC	1 cut(s)	233
AclWI	GGATC	3 cut(s)	40, 608, 752
AcoI	YGGCCR	1 cut(s)	651
AcsI	RAATTY	5 cut(s)	40, 264, 420, 622, 900
AfaI	GTAC	5 cut(s)	11, 236, 484, 662, 1041
AflIII	ACRYGT	1 cut(s)	1042
AgsI	TTSAA	4 cut(s)	373, 462, 602, 784
Alw21I	GWGCWC	1 cut(s)	87
AlwI	GGATC	3 cut(s)	40, 608, 752
Ama87I	CYCGRG	1 cut(s)	325
AoxI	GGCC	2 cut(s)	464, 651
ApeKI	GCWGC	5 cut(s)	239, 316, 399, 454, 812
ApoI	RAATTY	5 cut(s)	40, 264, 420, 622, 900
ArsI	GACNNNNNNTTYG	2 cut(s)	72, 104
AseI	ATTAAT	1 cut(s)	639
AsuC2I	CCSGG	1 cut(s)	404
AsuHPI	GGTGA	4 cut(s)	574, 739, 968, 1046
AvaI	CYCGRG	1 cut(s)	325
AxyI	CCTNAGG	1 cut(s)	504
BanII	GRGCYC	1 cut(s)	87
BbsI	GAAGAC	3 cut(s)	609, 876, 999
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	5 cut(s)	226, 328, 411, 441, 824
BccI	CCATC	7 cut(s)	177, 223, 389, 524, 777, 830, 947
BceAI	ACGGC	1 cut(s)	638
BcnI	CCSGG	1 cut(s)	404
BfaI	CTAG	2 cut(s)	300, 795
BfmI	CTRYAG	2 cut(s)	240, 829
BfuAI	ACCTGC	1 cut(s)	233
BisI	GCNGC	5 cut(s)	240, 317, 400, 455, 813
BlsI	GCNGC	5 cut(s)	241, 318, 401, 456, 814
Bme1390I	CCNGG	1 cut(s)	404
BmeT110I	CYCGRG	1 cut(s)	325
BmiI	GGNNCC	1 cut(s)	408
BmrFI	CCNGG	1 cut(s)	404
BmsI	GCATC	2 cut(s)	712, 726
BoxI	GACNNNNGTC	1 cut(s)	111
BpiI	GAAGAC	3 cut(s)	609, 876, 999
BpmI	CTGGAG	3 cut(s)	398, 471, 894
BpuEI	CTTGAG	1 cut(s)	675
BpuMI	CCSGG	1 cut(s)	404
Bsa29I	ATCGAT	1 cut(s)	923
BsaAI	YACGTR	1 cut(s)	1043
BsaJI	CCNNGG	2 cut(s)	109, 773
Bse1I	ACTGG	1 cut(s)	911
Bse21I	CCTNAGG	1 cut(s)	504
Bse3DI	GCAATG	2 cut(s)	277, 449
BseCI	ATCGAT	1 cut(s)	923
BseDI	CCNNGG	2 cut(s)	109, 773
BseGI	GGATG	4 cut(s)	169, 298, 400, 769
BseMI	GCAATG	2 cut(s)	277, 449
BseMII	CTCAG	1 cut(s)	495
BseNI	ACTGG	1 cut(s)	911
BseRI	GAGGAG	3 cut(s)	897, 998, 1001
BseXI	GCAGC	5 cut(s)	226, 328, 411, 441, 824
Bsh1285I	CGRYCG	2 cut(s)	109, 923
BshFI	GGCC	2 cut(s)	466, 653
BshVI	ATCGAT	1 cut(s)	923
BsiEI	CGRYCG	2 cut(s)	109, 923
BsiHKAI	GWGCWC	1 cut(s)	87
BsiHKCI	CYCGRG	1 cut(s)	325
BsiSI	CCGG	1 cut(s)	404
BsmI	GAATGC	1 cut(s)	457
BsnI	GGCC	2 cut(s)	466, 653
BsoBI	CYCGRG	1 cut(s)	325
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	4 cut(s)	32, 613, 744, 920
Bsp19I	CCATGG	1 cut(s)	773
BspANI	GGCC	2 cut(s)	466, 653
BspCNI	CTCAG	1 cut(s)	496
BspDI	ATCGAT	1 cut(s)	923
BspHI	TCATGA	1 cut(s)	876
BspLI	GGNNCC	1 cut(s)	408
BspMAI	CTGCAG	1 cut(s)	244
BspMI	ACCTGC	1 cut(s)	233
BspPI	GGATC	3 cut(s)	40, 608, 752
BsrDI	GCAATG	2 cut(s)	277, 449
BsrI	ACTGG	1 cut(s)	911
BssECI	CCNNGG	2 cut(s)	109, 773
BssMI	GATC	4 cut(s)	32, 613, 744, 920
BssT1I	CCWWGG	1 cut(s)	773
Bst4CI	ACNGT	5 cut(s)	110, 282, 341, 478, 1012
Bst6I	CTCTTC	2 cut(s)	514, 963
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstBAI	YACGTR	1 cut(s)	1043
BstC8I	GCNNGC	2 cut(s)	536, 540
BstDEI	CTNAG	2 cut(s)	441, 504
BstDSI	CCRYGG	2 cut(s)	109, 773
BstEII	GGTNACC	1 cut(s)	562
BstF5I	GGATG	4 cut(s)	169, 298, 400, 769
BstKTI	GATC	4 cut(s)	35, 616, 747, 923
BstMBI	GATC	4 cut(s)	32, 613, 744, 920
BstMCI	CGRYCG	2 cut(s)	109, 923
BstMWI	GCNNNNNNNGC	4 cut(s)	463, 497, 734, 799
BstNSI	RCATGY	1 cut(s)	1028
BstPAI	GACNNNNGTC	1 cut(s)	111
BstPI	GGTNACC	1 cut(s)	562
BstSCI	CCNGG	1 cut(s)	402
BstSFI	CTRYAG	2 cut(s)	240, 829
BstV1I	GCAGC	5 cut(s)	226, 328, 411, 441, 824
BstV2I	GAAGAC	3 cut(s)	609, 876, 999
BstX2I	RGATCY	2 cut(s)	32, 613
BstYI	RGATCY	2 cut(s)	32, 613
Bsu15I	ATCGAT	1 cut(s)	923
Bsu36I	CCTNAGG	1 cut(s)	504
BsuRI	GGCC	2 cut(s)	466, 653
BsuTUI	ATCGAT	1 cut(s)	923
BtgI	CCRYGG	2 cut(s)	109, 773
BtsCI	GGATG	4 cut(s)	169, 298, 400, 769
BtsIMutI	CAGTG	1 cut(s)	292
BveI	ACCTGC	1 cut(s)	233
Cac8I	GCNNGC	2 cut(s)	536, 540
CciI	TCATGA	1 cut(s)	876
ClaI	ATCGAT	1 cut(s)	923
Csp6I	GTAC	5 cut(s)	10, 235, 483, 661, 1040
CviAII	CATG	5 cut(s)	94, 555, 774, 877, 1025
CviQI	GTAC	5 cut(s)	10, 235, 483, 661, 1040
DdeI	CTNAG	2 cut(s)	441, 504
DpnI	GATC	4 cut(s)	34, 615, 746, 922
DpnII	GATC	4 cut(s)	32, 613, 744, 920
EaeI	YGGCCR	1 cut(s)	651
Eam1104I	CTCTTC	2 cut(s)	514, 963
EarI	CTCTTC	2 cut(s)	514, 963
Ecl136II	GAGCTC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	773
Eco147I	AGGCCT	1 cut(s)	466
Eco24I	GRGCYC	1 cut(s)	87
Eco53kI	GAGCTC	1 cut(s)	85
Eco81I	CCTNAGG	1 cut(s)	504
Eco88I	CYCGRG	1 cut(s)	325
Eco91I	GGTNACC	1 cut(s)	562
EcoICRI	GAGCTC	1 cut(s)	85
EcoO65I	GGTNACC	1 cut(s)	562
EcoT14I	CCWWGG	1 cut(s)	773
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	773
FaeI	CATG	5 cut(s)	97, 558, 777, 880, 1028
FatI	CATG	5 cut(s)	93, 554, 773, 876, 1024
Fnu4HI	GCNGC	5 cut(s)	240, 317, 400, 455, 813
FokI	GGATG	4 cut(s)	156, 305, 407, 756
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	5 cut(s)	240, 317, 400, 455, 813
FspBI	CTAG	2 cut(s)	300, 795
GluI	GCNGC	5 cut(s)	240, 317, 400, 455, 813
GsuI	CTGGAG	3 cut(s)	398, 471, 894
HaeIII	GGCC	2 cut(s)	466, 653
HapII	CCGG	1 cut(s)	404
Hin1II	CATG	5 cut(s)	97, 558, 777, 880, 1028
HindIII	AAGCTT	1 cut(s)	931
HinfI	GANTC	2 cut(s)	205, 667
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	4 cut(s)	574, 739, 968, 1046
Hpy166II	GTNNAC	1 cut(s)	682
Hpy188III	TCNNGA	9 cut(s)	327, 503, 516, 628, 671, 692, 763, 877, 918
Hpy8I	GTNNAC	1 cut(s)	682
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	2 cut(s)	16, 971
HpyCH4III	ACNGT	5 cut(s)	110, 282, 341, 478, 1012
HpyCH4IV	ACGT	1 cut(s)	1042
HpyCH4V	TGCA	7 cut(s)	242, 270, 275, 352, 457, 728, 1028
HpyF10VI	GCNNNNNNNGC	4 cut(s)	463, 497, 734, 799
HpyF3I	CTNAG	2 cut(s)	441, 504
HpySE526I	ACGT	1 cut(s)	1042
Hsp92II	CATG	5 cut(s)	97, 558, 777, 880, 1028
Kzo9I	GATC	4 cut(s)	32, 613, 744, 920
LmnI	GCTCC	3 cut(s)	412, 505, 587
Lsp1109I	GCAGC	5 cut(s)	226, 328, 411, 441, 824
LweI	GCATC	2 cut(s)	712, 726
MaeI	CTAG	2 cut(s)	300, 795
MaeII	ACGT	1 cut(s)	1042
MaeIII	GTNAC	2 cut(s)	113, 562
MalI	GATC	4 cut(s)	34, 615, 746, 922
MboI	GATC	4 cut(s)	32, 613, 744, 920
MflI	RGATCY	2 cut(s)	32, 613
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	5 cut(s)	40, 264, 420, 622, 900
MlyI	GAGTC	1 cut(s)	199
MseI	TTAA	2 cut(s)	639, 753
MslI	CAYNNNNRTG	1 cut(s)	1029
MspI	CCGG	1 cut(s)	404
MspR9I	CCNGG	1 cut(s)	404
Mva1269I	GAATGC	1 cut(s)	457
MwoI	GCNNNNNNNGC	4 cut(s)	463, 497, 734, 799
NciI	CCSGG	1 cut(s)	404
NcoI	CCATGG	1 cut(s)	773
NdeII	GATC	4 cut(s)	32, 613, 744, 920
NlaIII	CATG	5 cut(s)	97, 558, 777, 880, 1028
NlaIV	GGNNCC	1 cut(s)	408
NmuCI	GTSAC	2 cut(s)	113, 562
NspI	RCATGY	1 cut(s)	1028
PagI	TCATGA	1 cut(s)	876
PaqCI	CACCTGC	1 cut(s)	233
PceI	AGGCCT	1 cut(s)	466
PctI	GAATGC	1 cut(s)	457
PfeI	GAWTC	1 cut(s)	667
PkrI	GCNGC	5 cut(s)	241, 318, 401, 456, 814
Ple19I	CGATCG	1 cut(s)	923
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
Ppu21I	YACGTR	1 cut(s)	1043
PshAI	GACNNNNGTC	1 cut(s)	111
PshBI	ATTAAT	1 cut(s)	639
Psp124BI	GAGCTC	1 cut(s)	87
PspEI	GGTNACC	1 cut(s)	562
PspN4I	GGNNCC	1 cut(s)	408
PstI	CTGCAG	1 cut(s)	244
PsuI	RGATCY	2 cut(s)	32, 613
PvuI	CGATCG	1 cut(s)	923
RsaI	GTAC	5 cut(s)	11, 236, 484, 662, 1041
RsaNI	GTAC	5 cut(s)	10, 235, 483, 661, 1040
RseI	CAYNNNNRTG	1 cut(s)	1029
SacI	GAGCTC	1 cut(s)	87
SaqAI	TTAA	2 cut(s)	639, 753
SatI	GCNGC	5 cut(s)	240, 317, 400, 455, 813
Sau3AI	GATC	4 cut(s)	32, 613, 744, 920
SchI	GAGTC	1 cut(s)	199
ScrFI	CCNGG	1 cut(s)	404
SduI	GDGCHC	1 cut(s)	87
SfaNI	GCATC	2 cut(s)	712, 726
SfcI	CTRYAG	2 cut(s)	240, 829
SmiMI	CAYNNNNRTG	1 cut(s)	1029
SmlI	CTYRAG	1 cut(s)	690
SmoI	CTYRAG	1 cut(s)	690
Sse9I	AATT	5 cut(s)	40, 264, 420, 622, 900
SseBI	AGGCCT	1 cut(s)	466
SspMI	CTAG	2 cut(s)	300, 795
SstI	GAGCTC	1 cut(s)	87
StuI	AGGCCT	1 cut(s)	466
StyD4I	CCNGG	1 cut(s)	402
StyI	CCWWGG	1 cut(s)	773
TaaI	ACNGT	5 cut(s)	110, 282, 341, 478, 1012
TaiI	ACGT	1 cut(s)	1045
TaqI	TCGA	6 cut(s)	105, 473, 517, 643, 867, 923
TasI	AATT	5 cut(s)	40, 264, 420, 622, 900
TatI	WGTACW	1 cut(s)	660
TfiI	GAWTC	1 cut(s)	667
Tru1I	TTAA	2 cut(s)	639, 753
Tru9I	TTAA	2 cut(s)	639, 753
TscAI	CASTG	1 cut(s)	292
TseFI	GTSAC	2 cut(s)	113, 562
TseI	GCWGC	5 cut(s)	239, 316, 399, 454, 812
Tsp45I	GTSAC	2 cut(s)	113, 562
TspDTI	ATGAA	3 cut(s)	110, 893, 1017
TspGWI	ACGGA	1 cut(s)	821
TspRI	CASTG	1 cut(s)	292
VspI	ATTAAT	1 cut(s)	639
XapI	RAATTY	5 cut(s)	40, 264, 420, 622, 900
XceI	RCATGY	1 cut(s)	1028
XspI	CTAG	2 cut(s)	300, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.