Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006983

Physical Location & Seq

Genomic Coordinates Forward (+)

44286469 .. 44289542

Gene Structure 3074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG357900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGAAAAGTATGAGCTTGTGAAGGATATAGGATCTGGCAATTTCGGGGTGGCCAGGCTTATGAGGAACAAAGAGACCAAAGAGCTTGTCGCCATGAAATACATCGACCGCGGCCTCAAGTCATCCTTGCTGCATTCAAGACCAAAATCAACTGTGGGAACTCCAGCGTATATTGCACCTGAGGTTCTTTCTCGAAGAGAGTATGACGGCAAGATGGCAGATGTATGGTCTTGTGGGGTGACCTTATATGTTATGCTGGTGGGAGCATATCCATTTGAGGACCAAGAAGATCCAAAGAATTTCAGAAAAACCATTAATCGAATAATGGCTGTTCAGTACAAGATCCCAGACTATGTTCACATATCTCAAGATTGTAGGCATCTCCTCTCGCGCATCTTTGTTGCAAATCCAGCAAGGAGGATCAGCATTAAAGAAATCAAGAACCACCCATGGTTTTTGAAGAACTTGCCGAGAGAGCTCACAGAAGCAGCTCAAACCATGTACTACAGAAAAGAAAACCCAACCTTTTCCCTCCAAAGTGTTGAAGACATCATGAAGATAGTGGAAGAAGCCAAAAATCCTCCCCCAGTTTCCCGATCGGTTGGAGGCTTTGGCTGGGGAGGAGAAGAAGACGATGGTGATGCAAAGGATGATGTAGAGGGCGAGGAGGAAGAAGACGAGTATGAAAAGAGAGTGAAAGAAGCACATCAAAGTGGGGAAGTACGTGTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009791 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022622 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0042742 GO:0043167 GO:0043168 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070300 GO:0071704 GO:0090696 GO:0098542 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase

Protein Analysis

244

Amino Acids

27.98

Weight (kDa)

5.86

Isoelectric Point (pI)

49.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	38 - 152	1.8e-25	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	52 - 148	2.9e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10940 AT1G10940 AT1G60940 AT1G60940 AT5G08590 AT5G08590 AT5G63650
fragaria_vesca	FvH4_5g28850 FvH4_5g28850 FvH4_5g28850 FvH4_5g28850 FvH4_5g28850
malus_domestica	MD08G1236500.v1.1 MD15G1428500.v1.1
prunus_persica	Prupe.1G573300_v2.0.a1 Prupe.1G573300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0221191
rosa_laevigata	RLG00000002171
rosa_multiflora	Rmu_sc0000324.1_g000005
rosa_roxburghii	Rroxscaffold_3G00238620
rosa_rugosa	Rorug07G0201000
rosa_samantha	Rh7BG331000 Rh7CG357900 Rh7DG338600
rosa_wichuraiana	Rw7G028930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	111, 391
AciI	CCGC	2 cut(s)	109, 111
AclWI	GGATC	4 cut(s)	40, 284, 337, 428
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	1 cut(s)	298
AfaI	GTAC	3 cut(s)	338, 503, 723
AflIII	ACRYGT	1 cut(s)	724
AgsI	TTSAA	3 cut(s)	138, 460, 545
AjnI	CCWGG	1 cut(s)	53
AluBI	AGCT	4 cut(s)	16, 85, 478, 491
AluI	AGCT	4 cut(s)	16, 85, 478, 491
Alw21I	GWGCWC	1 cut(s)	480
Alw26I	GTCTC	1 cut(s)	68
AlwI	GGATC	4 cut(s)	40, 284, 337, 428
AoxI	GGCC	2 cut(s)	51, 112
ApeKI	GCWGC	2 cut(s)	130, 488
ApoI	RAATTY	1 cut(s)	298
ArsI	GACNNNNNNTTYG	2 cut(s)	72, 104
AseI	ATTAAT	1 cut(s)	315
AspLEI	GCGC	1 cut(s)	393
AspS9I	GGNCC	1 cut(s)	280
AsuHPI	GGTGA	2 cut(s)	250, 650
AvaII	GGWCC	1 cut(s)	280
AxyI	CCTNAGG	1 cut(s)	180
BalI	TGGCCA	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	480
BbsI	GAAGAC	3 cut(s)	552, 636, 681
Bbv12I	GWGCWC	1 cut(s)	480
BbvI	GCAGC	2 cut(s)	117, 500
BccI	CCATC	2 cut(s)	208, 629
BceAI	ACGGC	1 cut(s)	223
BcgI	CGANNNNNNTGC	2 cut(s)	623, 657
BciT130I	CCWGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	68
BfmI	CTRYAG	1 cut(s)	505
BisI	GCNGC	3 cut(s)	112, 131, 489
BlsI	GCNGC	3 cut(s)	113, 132, 490
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	280
BmrFI	CCNGG	1 cut(s)	55
BmrI	ACTGGG	1 cut(s)	581
BmsI	GCATC	3 cut(s)	388, 402, 631
BmuI	ACTGGG	1 cut(s)	581
BpiI	GAAGAC	3 cut(s)	552, 636, 681
BpmI	CTGGAG	1 cut(s)	147
BpuEI	CTTGAG	2 cut(s)	101, 351
BsaAI	YACGTR	1 cut(s)	725
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	2 cut(s)	109, 449
Bse1I	ACTGG	1 cut(s)	587
Bse21I	CCTNAGG	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	55
BseDI	CCNNGG	2 cut(s)	109, 449
BseGI	GGATG	2 cut(s)	122, 655
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	587
BseRI	GAGGAG	3 cut(s)	374, 636, 680
BseXI	GCAGC	2 cut(s)	117, 500
BseYI	CCCAGC	1 cut(s)	615
Bsh1236I	CGCG	2 cut(s)	111, 391
Bsh1285I	CGRYCG	2 cut(s)	109, 599
BshFI	GGCC	2 cut(s)	53, 114
BsiEI	CGRYCG	2 cut(s)	109, 599
BsiHKAI	GWGCWC	1 cut(s)	480
BsmAI	GTCTC	1 cut(s)	68
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	2 cut(s)	53, 114
Bso31I	GGTCTC	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	480
Bsp143I	GATC	5 cut(s)	32, 289, 342, 420, 596
Bsp19I	CCATGG	1 cut(s)	449
BspACI	CCGC	2 cut(s)	109, 111
BspANI	GGCC	2 cut(s)	53, 114
BspCNI	CTCAG	1 cut(s)	172
BspFNI	CGCG	2 cut(s)	111, 391
BspHI	TCATGA	1 cut(s)	552
BspPI	GGATC	4 cut(s)	40, 284, 337, 428
BspTNI	GGTCTC	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	587
BssECI	CCNNGG	2 cut(s)	109, 449
BssMI	GATC	5 cut(s)	32, 289, 342, 420, 596
BssT1I	CCWWGG	1 cut(s)	449
Bst2UI	CCWGG	1 cut(s)	55
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	190
BstBAI	YACGTR	1 cut(s)	725
BstDEI	CTNAG	1 cut(s)	180
BstDSI	CCRYGG	2 cut(s)	109, 449
BstEII	GGTNACC	1 cut(s)	238
BstF5I	GGATG	2 cut(s)	122, 655
BstFNI	CGCG	2 cut(s)	111, 391
BstHHI	GCGC	1 cut(s)	393
BstKTI	GATC	5 cut(s)	35, 292, 345, 423, 599
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	5 cut(s)	32, 289, 342, 420, 596
BstMCI	CGRYCG	2 cut(s)	109, 599
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 410, 475
BstNI	CCWGG	1 cut(s)	55
BstPI	GGTNACC	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	1 cut(s)	505
BstUI	CGCG	2 cut(s)	111, 391
BstV1I	GCAGC	2 cut(s)	117, 500
BstV2I	GAAGAC	3 cut(s)	552, 636, 681
BstX2I	RGATCY	3 cut(s)	32, 289, 342
BstYI	RGATCY	3 cut(s)	32, 289, 342
Bsu36I	CCTNAGG	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	53, 114
BtgI	CCRYGG	2 cut(s)	109, 449
BtsCI	GGATG	2 cut(s)	122, 655
CciI	TCATGA	1 cut(s)	552
CfoI	GCGC	1 cut(s)	393
Cfr13I	GGNCC	1 cut(s)	280
Cfr42I	CCGCGG	1 cut(s)	112
Csp6I	GTAC	3 cut(s)	337, 502, 722
CviAII	CATG	4 cut(s)	94, 450, 499, 553
CviQI	GTAC	3 cut(s)	337, 502, 722
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	5 cut(s)	34, 291, 344, 422, 598
DpnII	GATC	5 cut(s)	32, 289, 342, 420, 596
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	190
Ecl136II	GAGCTC	1 cut(s)	478
Eco130I	CCWWGG	1 cut(s)	449
Eco24I	GRGCYC	1 cut(s)	480
Eco31I	GGTCTC	1 cut(s)	68
Eco47I	GGWCC	1 cut(s)	280
Eco53kI	GAGCTC	1 cut(s)	478
Eco81I	CCTNAGG	1 cut(s)	180
Eco91I	GGTNACC	1 cut(s)	238
EcoICRI	GAGCTC	1 cut(s)	478
EcoO65I	GGTNACC	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	53
EcoT14I	CCWWGG	1 cut(s)	449
EcoT38I	GRGCYC	1 cut(s)	480
ErhI	CCWWGG	1 cut(s)	449
FaeI	CATG	4 cut(s)	97, 453, 502, 556
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FatI	CATG	4 cut(s)	93, 449, 498, 552
Fnu4HI	GCNGC	3 cut(s)	112, 131, 489
FokI	GGATG	2 cut(s)	109, 662
FriOI	GRGCYC	1 cut(s)	480
Fsp4HI	GCNGC	3 cut(s)	112, 131, 489
GlaI	GCGC	1 cut(s)	392
GluI	GCNGC	3 cut(s)	112, 131, 489
GsaI	CCCAGC	1 cut(s)	619
GsuI	CTGGAG	1 cut(s)	147
HaeIII	GGCC	2 cut(s)	53, 114
HhaI	GCGC	1 cut(s)	393
Hin1II	CATG	4 cut(s)	97, 453, 502, 556
Hin6I	GCGC	1 cut(s)	391
HinP1I	GCGC	1 cut(s)	391
HphI	GGTGA	2 cut(s)	250, 650
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	2 cut(s)	305, 734
Hpy188III	TCNNGA	6 cut(s)	138, 192, 368, 439, 553, 594
Hpy8I	GTNNAC	1 cut(s)	358
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	1 cut(s)	724
HpyCH4V	TGCA	4 cut(s)	133, 176, 404, 644
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 410, 475
HpyF3I	CTNAG	1 cut(s)	180
HpySE526I	ACGT	1 cut(s)	724
Hsp92II	CATG	4 cut(s)	97, 453, 502, 556
HspAI	GCGC	1 cut(s)	391
KspI	CCGCGG	1 cut(s)	112
Kzo9I	GATC	5 cut(s)	32, 289, 342, 420, 596
LmnI	GCTCC	1 cut(s)	263
Lsp1109I	GCAGC	2 cut(s)	117, 500
LweI	GCATC	3 cut(s)	388, 402, 631
MaeII	ACGT	1 cut(s)	724
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	5 cut(s)	34, 291, 344, 422, 598
MboI	GATC	5 cut(s)	32, 289, 342, 420, 596
MflI	RGATCY	3 cut(s)	32, 289, 342
MhlI	GDGCHC	1 cut(s)	480
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	2 cut(s)	40, 298
MluNI	TGGCCA	1 cut(s)	53
MmeI	TCCRAC	1 cut(s)	583
Mox20I	TGGCCA	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	53
MseI	TTAA	2 cut(s)	315, 429
MslI	CAYNNNNRTG	1 cut(s)	711
Msp20I	TGGCCA	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	55
Mva1269I	GAATGC	1 cut(s)	133
MvaI	CCWGG	1 cut(s)	55
MvnI	CGCG	2 cut(s)	111, 391
MwoI	GCNNNNNNNGC	3 cut(s)	173, 410, 475
NcoI	CCATGG	1 cut(s)	449
NdeII	GATC	5 cut(s)	32, 289, 342, 420, 596
NlaIII	CATG	4 cut(s)	97, 453, 502, 556
NmeAIII	GCCGAG	1 cut(s)	495
NmuCI	GTSAC	1 cut(s)	238
PagI	TCATGA	1 cut(s)	552
PctI	GAATGC	1 cut(s)	133
PkrI	GCNGC	3 cut(s)	113, 132, 490
Ple19I	CGATCG	1 cut(s)	599
Ppu21I	YACGTR	1 cut(s)	725
PshBI	ATTAAT	1 cut(s)	315
Psp124BI	GAGCTC	1 cut(s)	480
Psp6I	CCWGG	1 cut(s)	53
PspEI	GGTNACC	1 cut(s)	238
PspFI	CCCAGC	1 cut(s)	615
PspGI	CCWGG	1 cut(s)	53
PspPI	GGNCC	1 cut(s)	280
PsuI	RGATCY	3 cut(s)	32, 289, 342
PvuI	CGATCG	1 cut(s)	599
RsaI	GTAC	3 cut(s)	338, 503, 723
RsaNI	GTAC	3 cut(s)	337, 502, 722
RseI	CAYNNNNRTG	1 cut(s)	711
SacI	GAGCTC	1 cut(s)	480
SacII	CCGCGG	1 cut(s)	112
SaqAI	TTAA	2 cut(s)	315, 429
SatI	GCNGC	3 cut(s)	112, 131, 489
Sau3AI	GATC	5 cut(s)	32, 289, 342, 420, 596
Sau96I	GGNCC	1 cut(s)	280
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	480
SetI	ASST	9 cut(s)	18, 87, 181, 186, 245, 480, 493, 527, 727
SfaNI	GCATC	3 cut(s)	388, 402, 631
SfcI	CTRYAG	1 cut(s)	505
Sfr303I	CCGCGG	1 cut(s)	112
SgrBI	CCGCGG	1 cut(s)	112
SinI	GGWCC	1 cut(s)	280
SmiMI	CAYNNNNRTG	1 cut(s)	711
SmlI	CTYRAG	2 cut(s)	116, 366
SmoI	CTYRAG	2 cut(s)	116, 366
Sse9I	AATT	2 cut(s)	40, 298
SsiI	CCGC	2 cut(s)	109, 111
SstI	GAGCTC	1 cut(s)	480
StyD4I	CCNGG	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	449
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	1 cut(s)	727
TaqI	TCGA	3 cut(s)	105, 193, 319
TasI	AATT	2 cut(s)	40, 298
TatI	WGTACW	2 cut(s)	336, 501
TauI	GCSGC	1 cut(s)	114
Tru1I	TTAA	2 cut(s)	315, 429
Tru9I	TTAA	2 cut(s)	315, 429
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	2 cut(s)	130, 488
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	3 cut(s)	110, 569, 699
VpaK11BI	GGWCC	1 cut(s)	280
VspI	ATTAAT	1 cut(s)	315
XapI	RAATTY	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.