Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0006983

Physical Location & Seq

Genomic Coordinates Forward (+)

34265676 .. 34268835

Gene Structure 3160 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG331000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGAAAAGTATGAGCTTGTGAAGGATATAGGATCTGGCAATTTCGGGGTGGCCAGACTTATGAGGAACAAAGAGACCAAAGAGCTCGTCGCCATGAAATACATCGACCGCGGCCTCAAGTCATCCTTGCTGCATTCAAGACCAAAATCAACTGTGGGAACTCCAGCGTATATTGCACCTGAGGTTCTTTCTCGAAGAGAGTATGACGGCAAGCGAATAATGGCTGTTCAGTACAAGATCCCAGACTATGTTCACATATCTCAAGATTGTAGGCATCTCCTCTCGCGCATCTTTGTTGCAAATCCAGCAAGGAGGATCACCATTAAAGAAATCAAGAACCACCCATGGTTTTTGAAGAACTTGCCGAGAGAGCTCACAGAAGCAGCTCAAACCATGTACTACAGAAAAGAAAACCCAACCTTTTCCCTCCAAAGTGTTGAAGACATCATGAAGATAGTGGAAGAAGCCAAAAACCCTCCCCCAGTTTCCCGATCGGTTGGAGGCTTTGGCTGGGGAGGAGAAGAAGATGATGGCGATGCAAAGGATGATGTAGAGGGCGAGGAGGAAGAAGACGAGTATGAAAAGAGAGTGAAAGAAGCACATCAAAGTGGGGAAGTACGTGTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009791 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022622 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0042742 GO:0043167 GO:0043168 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070300 GO:0071704 GO:0090696 GO:0098542 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase

Protein Analysis

209

Amino Acids

23.97

Weight (kDa)

6.26

Isoelectric Point (pI)

51.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10940 AT1G10940 AT1G60940 AT1G60940 AT5G08590 AT5G08590 AT5G63650
fragaria_vesca	FvH4_5g28850 FvH4_5g28850 FvH4_5g28850 FvH4_5g28850 FvH4_5g28850
malus_domestica	MD08G1236500.v1.1 MD15G1428500.v1.1
prunus_persica	Prupe.1G573300_v2.0.a1 Prupe.1G573300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0221191
rosa_laevigata	RLG00000002171
rosa_multiflora	Rmu_sc0000324.1_g000005
rosa_roxburghii	Rroxscaffold_3G00238620
rosa_rugosa	Rorug07G0201000
rosa_samantha	Rh7BG331000 Rh7CG357900 Rh7DG338600
rosa_wichuraiana	Rw7G028930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	111, 286
AciI	CCGC	2 cut(s)	109, 111
AclWI	GGATC	3 cut(s)	40, 232, 323
AcoI	YGGCCR	1 cut(s)	51
AfaI	GTAC	3 cut(s)	233, 398, 618
AflIII	ACRYGT	1 cut(s)	619
AgsI	TTSAA	3 cut(s)	138, 355, 440
AluBI	AGCT	4 cut(s)	16, 85, 373, 386
AluI	AGCT	4 cut(s)	16, 85, 373, 386
Alw21I	GWGCWC	2 cut(s)	87, 375
Alw26I	GTCTC	1 cut(s)	68
AlwI	GGATC	3 cut(s)	40, 232, 323
AoxI	GGCC	2 cut(s)	51, 112
ApeKI	GCWGC	2 cut(s)	130, 383
ArsI	GACNNNNNNTTYG	2 cut(s)	72, 104
AspLEI	GCGC	1 cut(s)	288
AsuHPI	GGTGA	1 cut(s)	310
AxyI	CCTNAGG	1 cut(s)	180
BalI	TGGCCA	1 cut(s)	53
BanII	GRGCYC	2 cut(s)	87, 375
BbsI	GAAGAC	2 cut(s)	447, 576
Bbv12I	GWGCWC	2 cut(s)	87, 375
BbvI	GCAGC	2 cut(s)	117, 395
BccI	CCATC	1 cut(s)	524
BceAI	ACGGC	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	68
BfmI	CTRYAG	1 cut(s)	400
BisI	GCNGC	3 cut(s)	112, 131, 384
BlsI	GCNGC	3 cut(s)	113, 132, 385
BmrI	ACTGGG	1 cut(s)	476
BmsI	GCATC	3 cut(s)	283, 297, 526
BmuI	ACTGGG	1 cut(s)	476
BpiI	GAAGAC	2 cut(s)	447, 576
BpmI	CTGGAG	1 cut(s)	147
BpuEI	CTTGAG	2 cut(s)	101, 246
BsaAI	YACGTR	1 cut(s)	620
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	2 cut(s)	109, 344
Bse1I	ACTGG	1 cut(s)	482
Bse21I	CCTNAGG	1 cut(s)	180
BseDI	CCNNGG	2 cut(s)	109, 344
BseGI	GGATG	2 cut(s)	122, 550
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	482
BseRI	GAGGAG	3 cut(s)	269, 531, 575
BseXI	GCAGC	2 cut(s)	117, 395
BseYI	CCCAGC	1 cut(s)	510
Bsh1236I	CGCG	2 cut(s)	111, 286
Bsh1285I	CGRYCG	2 cut(s)	109, 494
BshFI	GGCC	2 cut(s)	53, 114
BsiEI	CGRYCG	2 cut(s)	109, 494
BsiHKAI	GWGCWC	2 cut(s)	87, 375
BsmAI	GTCTC	1 cut(s)	68
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	2 cut(s)	53, 114
Bso31I	GGTCTC	1 cut(s)	68
Bsp1286I	GDGCHC	2 cut(s)	87, 375
Bsp143I	GATC	4 cut(s)	32, 237, 315, 491
Bsp19I	CCATGG	1 cut(s)	344
BspACI	CCGC	2 cut(s)	109, 111
BspANI	GGCC	2 cut(s)	53, 114
BspCNI	CTCAG	1 cut(s)	172
BspFNI	CGCG	2 cut(s)	111, 286
BspHI	TCATGA	1 cut(s)	447
BspPI	GGATC	3 cut(s)	40, 232, 323
BspTNI	GGTCTC	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	482
BssECI	CCNNGG	2 cut(s)	109, 344
BssMI	GATC	4 cut(s)	32, 237, 315, 491
BssT1I	CCWWGG	1 cut(s)	344
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	190
BstBAI	YACGTR	1 cut(s)	620
BstC8I	GCNNGC	1 cut(s)	212
BstDEI	CTNAG	1 cut(s)	180
BstDSI	CCRYGG	2 cut(s)	109, 344
BstF5I	GGATG	2 cut(s)	122, 550
BstFNI	CGCG	2 cut(s)	111, 286
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	4 cut(s)	35, 240, 318, 494
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	4 cut(s)	32, 237, 315, 491
BstMCI	CGRYCG	2 cut(s)	109, 494
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 305, 370
BstSFI	CTRYAG	1 cut(s)	400
BstUI	CGCG	2 cut(s)	111, 286
BstV1I	GCAGC	2 cut(s)	117, 395
BstV2I	GAAGAC	2 cut(s)	447, 576
BstX2I	RGATCY	2 cut(s)	32, 237
BstYI	RGATCY	2 cut(s)	32, 237
Bsu36I	CCTNAGG	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	53, 114
BtgI	CCRYGG	2 cut(s)	109, 344
BtgZI	GCGATG	1 cut(s)	549
BtsCI	GGATG	2 cut(s)	122, 550
Cac8I	GCNNGC	1 cut(s)	212
CciI	TCATGA	1 cut(s)	447
CfoI	GCGC	1 cut(s)	288
Cfr42I	CCGCGG	1 cut(s)	112
Csp6I	GTAC	3 cut(s)	232, 397, 617
CviAII	CATG	4 cut(s)	94, 345, 394, 448
CviQI	GTAC	3 cut(s)	232, 397, 617
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	4 cut(s)	34, 239, 317, 493
DpnII	GATC	4 cut(s)	32, 237, 315, 491
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	190
Ecl136II	GAGCTC	2 cut(s)	85, 373
Eco130I	CCWWGG	1 cut(s)	344
Eco24I	GRGCYC	2 cut(s)	87, 375
Eco31I	GGTCTC	1 cut(s)	68
Eco53kI	GAGCTC	2 cut(s)	85, 373
Eco81I	CCTNAGG	1 cut(s)	180
EcoICRI	GAGCTC	2 cut(s)	85, 373
EcoT14I	CCWWGG	1 cut(s)	344
EcoT38I	GRGCYC	2 cut(s)	87, 375
ErhI	CCWWGG	1 cut(s)	344
FaeI	CATG	4 cut(s)	97, 348, 397, 451
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FatI	CATG	4 cut(s)	93, 344, 393, 447
Fnu4HI	GCNGC	3 cut(s)	112, 131, 384
FokI	GGATG	2 cut(s)	109, 557
FriOI	GRGCYC	2 cut(s)	87, 375
Fsp4HI	GCNGC	3 cut(s)	112, 131, 384
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	3 cut(s)	112, 131, 384
GsaI	CCCAGC	1 cut(s)	514
GsuI	CTGGAG	1 cut(s)	147
HaeIII	GGCC	2 cut(s)	53, 114
HhaI	GCGC	1 cut(s)	288
Hin1II	CATG	4 cut(s)	97, 348, 397, 451
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	1 cut(s)	629
Hpy188III	TCNNGA	6 cut(s)	138, 192, 263, 334, 448, 489
Hpy8I	GTNNAC	1 cut(s)	253
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	1 cut(s)	619
HpyCH4V	TGCA	4 cut(s)	133, 176, 299, 539
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 305, 370
HpyF3I	CTNAG	1 cut(s)	180
HpySE526I	ACGT	1 cut(s)	619
Hsp92II	CATG	4 cut(s)	97, 348, 397, 451
HspAI	GCGC	1 cut(s)	286
KspI	CCGCGG	1 cut(s)	112
Kzo9I	GATC	4 cut(s)	32, 237, 315, 491
LpnPI	CCDG	8 cut(s)	21, 67, 177, 192, 255, 318, 495, 496
Lsp1109I	GCAGC	2 cut(s)	117, 395
LweI	GCATC	3 cut(s)	283, 297, 526
MaeII	ACGT	1 cut(s)	619
MalI	GATC	4 cut(s)	34, 239, 317, 493
MboI	GATC	4 cut(s)	32, 237, 315, 491
MboII	GAAGA	9 cut(s)	207, 367, 452, 463, 473, 533, 536, 578, 581
MflI	RGATCY	2 cut(s)	32, 237
MhlI	GDGCHC	2 cut(s)	87, 375
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	1 cut(s)	40
MluNI	TGGCCA	1 cut(s)	53
MmeI	TCCRAC	1 cut(s)	478
Mox20I	TGGCCA	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	53
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	1 cut(s)	606
Msp20I	TGGCCA	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	111
Mva1269I	GAATGC	1 cut(s)	133
MvnI	CGCG	2 cut(s)	111, 286
MwoI	GCNNNNNNNGC	3 cut(s)	173, 305, 370
NcoI	CCATGG	1 cut(s)	344
NdeII	GATC	4 cut(s)	32, 237, 315, 491
NlaIII	CATG	4 cut(s)	97, 348, 397, 451
NmeAIII	GCCGAG	1 cut(s)	390
PagI	TCATGA	1 cut(s)	447
PctI	GAATGC	1 cut(s)	133
PkrI	GCNGC	3 cut(s)	113, 132, 385
Ple19I	CGATCG	1 cut(s)	494
Ppu21I	YACGTR	1 cut(s)	620
Psp124BI	GAGCTC	2 cut(s)	87, 375
PspFI	CCCAGC	1 cut(s)	510
PsuI	RGATCY	2 cut(s)	32, 237
PvuI	CGATCG	1 cut(s)	494
RsaI	GTAC	3 cut(s)	233, 398, 618
RsaNI	GTAC	3 cut(s)	232, 397, 617
RseI	CAYNNNNRTG	1 cut(s)	606
SacI	GAGCTC	2 cut(s)	87, 375
SacII	CCGCGG	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	3 cut(s)	112, 131, 384
Sau3AI	GATC	4 cut(s)	32, 237, 315, 491
SduI	GDGCHC	2 cut(s)	87, 375
SetI	ASST	8 cut(s)	18, 87, 181, 186, 375, 388, 422, 622
SfaNI	GCATC	3 cut(s)	283, 297, 526
SfcI	CTRYAG	1 cut(s)	400
Sfr303I	CCGCGG	1 cut(s)	112
SgrBI	CCGCGG	1 cut(s)	112
SmiMI	CAYNNNNRTG	1 cut(s)	606
SmlI	CTYRAG	2 cut(s)	116, 261
SmoI	CTYRAG	2 cut(s)	116, 261
Sse9I	AATT	1 cut(s)	40
SsiI	CCGC	2 cut(s)	109, 111
SstI	GAGCTC	2 cut(s)	87, 375
StyI	CCWWGG	1 cut(s)	344
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	1 cut(s)	622
TaqI	TCGA	2 cut(s)	105, 193
TasI	AATT	1 cut(s)	40
TatI	WGTACW	2 cut(s)	231, 396
TauI	GCSGC	1 cut(s)	114
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TseI	GCWGC	2 cut(s)	130, 383
TspDTI	ATGAA	3 cut(s)	110, 464, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.