Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006983

Physical Location & Seq

Genomic Coordinates Reverse (-)

26833756 .. 26837581

Gene Structure 3826 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00238620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGAAAAGTATGAGCTTGTGAAGGATATAGGATCTGGCAATTTCGGGGTGGCCAGGCTTATGAGGAACAAAGAGACCAAAGAGCTCGTCGCCATGAAATACATCGACCGCGGCCTCAAGCAAATATGCCATCGAGATTTGAAGCTGGAGAATACCTTGCTGGATGGCAGCCCAGCTCCACGCCTGAAAATTTGTGATTTCGGTTATTCTAAGTCATCCTTGCTGCATTCAAGACCAAAATCAACTGTGGGAACTCCAGCGTATATCGCACCTGAGGTTCTTTCTCGAAGAGAGTATGACGGCAAGATGGCAGATGTATGGTCTTGTGGGGTGACCTTATATGTTATGCTGGTGGGAGCATATCCATTTGAGGACCAAGAAGATCCAAAGAATTTCAGAAAAACCATTAATCGAATAATGGCTGTTCAGTACAAGATCCCAGACTATGTTCACATATCTCAAGATTGTAGGCATCTCCTCTCGCGCATCTTTGTTGCAAATCCAGCAAGGAGGATCACCATTAAAGAAATCAAGAACCACCCATGGTTTTTGAAGAACTTGCCGAGAGAGCTAACAGAAGCAGCTCAAACCATGTACTACAGAAAAGAAAACCCAACCTTTTCCCTCCAAAGTGTTGAAGACATCATGAAGATAGTGGAAGAAGCCAAAAATCCTCCCCCAGTTTCCCGATCGGTTGGAGGCTTTGGCTGGGGAGGAGAAGAAGATGATGGCGATGCAAAGGATGATGTAGAGGGCGAGGAGGAAGAAGACGAGTATGAAAAGAGAGTGAAAGAAGCACATCAAAGTGGGGAAGTACGTGTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009791 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022622 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0042742 GO:0043167 GO:0043168 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070300 GO:0071704 GO:0090696 GO:0098542 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase

Protein Analysis

275

Amino Acids

31.5

Weight (kDa)

6.14

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	31 - 179	2.7e-15	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	40 - 183	2e-38	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10940 AT1G10940 AT1G60940 AT1G60940 AT5G08590 AT5G08590 AT5G63650
fragaria_vesca	FvH4_5g28850 FvH4_5g28850 FvH4_5g28850 FvH4_5g28850 FvH4_5g28850
malus_domestica	MD08G1236500.v1.1 MD15G1428500.v1.1
prunus_persica	Prupe.1G573300_v2.0.a1 Prupe.1G573300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0221191
rosa_laevigata	RLG00000002171
rosa_multiflora	Rmu_sc0000324.1_g000005
rosa_roxburghii	Rroxscaffold_3G00238620
rosa_rugosa	Rorug07G0201000
rosa_samantha	Rh7BG331000 Rh7CG357900 Rh7DG338600
rosa_wichuraiana	Rw7G028930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	111, 484
AciI	CCGC	2 cut(s)	109, 111
AclWI	GGATC	4 cut(s)	40, 377, 430, 521
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	2 cut(s)	189, 391
AfaI	GTAC	3 cut(s)	431, 596, 816
AflIII	ACRYGT	1 cut(s)	817
AgsI	TTSAA	4 cut(s)	142, 231, 553, 638
AjnI	CCWGG	1 cut(s)	53
AluBI	AGCT	6 cut(s)	16, 85, 145, 176, 571, 584
AluI	AGCT	6 cut(s)	16, 85, 145, 176, 571, 584
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	68
AlwI	GGATC	4 cut(s)	40, 377, 430, 521
AoxI	GGCC	2 cut(s)	51, 112
ApeKI	GCWGC	3 cut(s)	168, 223, 581
ApoI	RAATTY	2 cut(s)	189, 391
ArsI	GACNNNNNNTTYG	2 cut(s)	72, 104
AseI	ATTAAT	1 cut(s)	408
AspLEI	GCGC	1 cut(s)	486
AspS9I	GGNCC	1 cut(s)	373
AsuHPI	GGTGA	2 cut(s)	343, 508
AvaII	GGWCC	1 cut(s)	373
AxyI	CCTNAGG	1 cut(s)	273
BalI	TGGCCA	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	87
BbsI	GAAGAC	2 cut(s)	645, 774
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	3 cut(s)	180, 210, 593
BccI	CCATC	4 cut(s)	138, 158, 301, 722
BceAI	ACGGC	1 cut(s)	316
BciT130I	CCWGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	68
BfmI	CTRYAG	1 cut(s)	598
BisI	GCNGC	4 cut(s)	112, 169, 224, 582
BlsI	GCNGC	4 cut(s)	113, 170, 225, 583
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	373
BmrFI	CCNGG	1 cut(s)	55
BmrI	ACTGGG	1 cut(s)	674
BmsI	GCATC	3 cut(s)	481, 495, 724
BmuI	ACTGGG	1 cut(s)	674
BpiI	GAAGAC	2 cut(s)	645, 774
BpmI	CTGGAG	2 cut(s)	167, 240
BpuEI	CTTGAG	2 cut(s)	101, 444
BsaAI	YACGTR	1 cut(s)	818
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	2 cut(s)	109, 542
Bse1I	ACTGG	1 cut(s)	680
Bse21I	CCTNAGG	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	55
BseDI	CCNNGG	2 cut(s)	109, 542
BseGI	GGATG	3 cut(s)	169, 215, 748
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	1 cut(s)	680
BseRI	GAGGAG	3 cut(s)	467, 729, 773
BseXI	GCAGC	3 cut(s)	180, 210, 593
BseYI	CCCAGC	2 cut(s)	172, 708
Bsh1236I	CGCG	2 cut(s)	111, 484
Bsh1285I	CGRYCG	2 cut(s)	109, 692
BshFI	GGCC	2 cut(s)	53, 114
BsiEI	CGRYCG	2 cut(s)	109, 692
BsiHKAI	GWGCWC	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	68
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	2 cut(s)	53, 114
Bso31I	GGTCTC	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	5 cut(s)	32, 382, 435, 513, 689
Bsp19I	CCATGG	1 cut(s)	542
BspACI	CCGC	2 cut(s)	109, 111
BspANI	GGCC	2 cut(s)	53, 114
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	2 cut(s)	111, 484
BspHI	TCATGA	1 cut(s)	645
BspPI	GGATC	4 cut(s)	40, 377, 430, 521
BspTNI	GGTCTC	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	680
BssECI	CCNNGG	2 cut(s)	109, 542
BssMI	GATC	5 cut(s)	32, 382, 435, 513, 689
BssT1I	CCWWGG	1 cut(s)	542
Bst2UI	CCWGG	1 cut(s)	55
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	1 cut(s)	283
BstBAI	YACGTR	1 cut(s)	818
BstDEI	CTNAG	2 cut(s)	210, 273
BstDSI	CCRYGG	2 cut(s)	109, 542
BstEII	GGTNACC	1 cut(s)	331
BstF5I	GGATG	3 cut(s)	169, 215, 748
BstFNI	CGCG	2 cut(s)	111, 484
BstHHI	GCGC	1 cut(s)	486
BstKTI	GATC	5 cut(s)	35, 385, 438, 516, 692
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	5 cut(s)	32, 382, 435, 513, 689
BstMCI	CGRYCG	2 cut(s)	109, 692
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 503, 568
BstNI	CCWGG	1 cut(s)	55
BstPI	GGTNACC	1 cut(s)	331
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	1 cut(s)	598
BstUI	CGCG	2 cut(s)	111, 484
BstV1I	GCAGC	3 cut(s)	180, 210, 593
BstV2I	GAAGAC	2 cut(s)	645, 774
BstX2I	RGATCY	3 cut(s)	32, 382, 435
BstYI	RGATCY	3 cut(s)	32, 382, 435
Bsu36I	CCTNAGG	1 cut(s)	273
BsuRI	GGCC	2 cut(s)	53, 114
BtgI	CCRYGG	2 cut(s)	109, 542
BtgZI	GCGATG	1 cut(s)	747
BtsCI	GGATG	3 cut(s)	169, 215, 748
CciI	TCATGA	1 cut(s)	645
CfoI	GCGC	1 cut(s)	486
Cfr13I	GGNCC	1 cut(s)	373
Cfr42I	CCGCGG	1 cut(s)	112
Csp6I	GTAC	3 cut(s)	430, 595, 815
CviAII	CATG	4 cut(s)	94, 543, 592, 646
CviQI	GTAC	3 cut(s)	430, 595, 815
DdeI	CTNAG	2 cut(s)	210, 273
DpnI	GATC	5 cut(s)	34, 384, 437, 515, 691
DpnII	GATC	5 cut(s)	32, 382, 435, 513, 689
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	283
EarI	CTCTTC	1 cut(s)	283
Ecl136II	GAGCTC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	542
Eco24I	GRGCYC	1 cut(s)	87
Eco31I	GGTCTC	1 cut(s)	68
Eco47I	GGWCC	1 cut(s)	373
Eco53kI	GAGCTC	1 cut(s)	85
Eco81I	CCTNAGG	1 cut(s)	273
Eco91I	GGTNACC	1 cut(s)	331
EcoICRI	GAGCTC	1 cut(s)	85
EcoO65I	GGTNACC	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	53
EcoT14I	CCWWGG	1 cut(s)	542
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	542
FaeI	CATG	4 cut(s)	97, 546, 595, 649
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FatI	CATG	4 cut(s)	93, 542, 591, 645
Fnu4HI	GCNGC	4 cut(s)	112, 169, 224, 582
FokI	GGATG	3 cut(s)	176, 202, 755
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	4 cut(s)	112, 169, 224, 582
GlaI	GCGC	1 cut(s)	485
GluI	GCNGC	4 cut(s)	112, 169, 224, 582
GsaI	CCCAGC	2 cut(s)	176, 712
GsuI	CTGGAG	2 cut(s)	167, 240
HaeIII	GGCC	2 cut(s)	53, 114
HhaI	GCGC	1 cut(s)	486
Hin1II	CATG	4 cut(s)	97, 546, 595, 649
Hin6I	GCGC	1 cut(s)	484
HinP1I	GCGC	1 cut(s)	484
HphI	GGTGA	2 cut(s)	343, 508
Hpy166II	GTNNAC	1 cut(s)	451
Hpy188I	TCNGA	2 cut(s)	398, 827
Hpy188III	TCNNGA	7 cut(s)	134, 231, 285, 461, 532, 646, 687
Hpy8I	GTNNAC	1 cut(s)	451
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	817
HpyCH4V	TGCA	3 cut(s)	226, 497, 737
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 503, 568
HpyF3I	CTNAG	2 cut(s)	210, 273
HpySE526I	ACGT	1 cut(s)	817
Hsp92II	CATG	4 cut(s)	97, 546, 595, 649
HspAI	GCGC	1 cut(s)	484
KspI	CCGCGG	1 cut(s)	112
Kzo9I	GATC	5 cut(s)	32, 382, 435, 513, 689
LmnI	GCTCC	2 cut(s)	181, 356
Lsp1109I	GCAGC	3 cut(s)	180, 210, 593
LweI	GCATC	3 cut(s)	481, 495, 724
MaeII	ACGT	1 cut(s)	817
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	5 cut(s)	34, 384, 437, 515, 691
MboI	GATC	5 cut(s)	32, 382, 435, 513, 689
MflI	RGATCY	3 cut(s)	32, 382, 435
MhlI	GDGCHC	1 cut(s)	87
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	3 cut(s)	40, 189, 391
MluNI	TGGCCA	1 cut(s)	53
MmeI	TCCRAC	1 cut(s)	676
Mox20I	TGGCCA	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	53
MseI	TTAA	2 cut(s)	408, 522
MslI	CAYNNNNRTG	1 cut(s)	804
Msp20I	TGGCCA	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	55
Mva1269I	GAATGC	1 cut(s)	226
MvaI	CCWGG	1 cut(s)	55
MvnI	CGCG	2 cut(s)	111, 484
MwoI	GCNNNNNNNGC	3 cut(s)	266, 503, 568
NcoI	CCATGG	1 cut(s)	542
NdeII	GATC	5 cut(s)	32, 382, 435, 513, 689
NlaIII	CATG	4 cut(s)	97, 546, 595, 649
NmeAIII	GCCGAG	1 cut(s)	588
NmuCI	GTSAC	1 cut(s)	331
PagI	TCATGA	1 cut(s)	645
PctI	GAATGC	1 cut(s)	226
PkrI	GCNGC	4 cut(s)	113, 170, 225, 583
Ple19I	CGATCG	1 cut(s)	692
Ppu21I	YACGTR	1 cut(s)	818
PshBI	ATTAAT	1 cut(s)	408
Psp124BI	GAGCTC	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	53
PspEI	GGTNACC	1 cut(s)	331
PspFI	CCCAGC	2 cut(s)	172, 708
PspGI	CCWGG	1 cut(s)	53
PspPI	GGNCC	1 cut(s)	373
PsuI	RGATCY	3 cut(s)	32, 382, 435
PvuI	CGATCG	1 cut(s)	692
RsaI	GTAC	3 cut(s)	431, 596, 816
RsaNI	GTAC	3 cut(s)	430, 595, 815
RseI	CAYNNNNRTG	1 cut(s)	804
SacI	GAGCTC	1 cut(s)	87
SacII	CCGCGG	1 cut(s)	112
SaqAI	TTAA	2 cut(s)	408, 522
SatI	GCNGC	4 cut(s)	112, 169, 224, 582
Sau3AI	GATC	5 cut(s)	32, 382, 435, 513, 689
Sau96I	GGNCC	1 cut(s)	373
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	87
SfaNI	GCATC	3 cut(s)	481, 495, 724
SfcI	CTRYAG	1 cut(s)	598
Sfr303I	CCGCGG	1 cut(s)	112
SgrBI	CCGCGG	1 cut(s)	112
SinI	GGWCC	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	804
SmlI	CTYRAG	2 cut(s)	116, 459
SmoI	CTYRAG	2 cut(s)	116, 459
Sse9I	AATT	3 cut(s)	40, 189, 391
SsiI	CCGC	2 cut(s)	109, 111
SstI	GAGCTC	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	542
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	1 cut(s)	820
TaqI	TCGA	4 cut(s)	105, 133, 286, 412
TasI	AATT	3 cut(s)	40, 189, 391
TatI	WGTACW	2 cut(s)	429, 594
TauI	GCSGC	1 cut(s)	114
Tru1I	TTAA	2 cut(s)	408, 522
Tru9I	TTAA	2 cut(s)	408, 522
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	3 cut(s)	168, 223, 581
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	3 cut(s)	110, 662, 792
VpaK11BI	GGWCC	1 cut(s)	373
VspI	ATTAAT	1 cut(s)	408
XapI	RAATTY	2 cut(s)	189, 391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.