Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006983

Physical Location & Seq

Genomic Coordinates Reverse (-)

52919102 .. 52923095

Gene Structure 3994 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1428500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGAAAAGTACGAGCTTGTTAAGGATATTGGATCTGGGAATTTTGGGGTGGCCAGGCTTATGAGGAACAAAGAGACCAAAGAGCTCGTTGCCATGAAATACATCGAACGCGGCCAAAAGATTGATGAGAATGTGGCAAGGGAAATCATAAACCATCGATCGCTTCGCCACCCAAACATCATTCGGTTCAAGGAGGTAGTTTTGACTCCTACACATCTTGCTATTGTTATGGAGTATGCGGCTGGTGGAGAGCTCTTTGAGAGGATTTGCAATGCAGGAAGGTTCAGTGAAGATGAGGCTAGATATTTTTTTCAGCAGCTTATCTCGGGAGTTAGCTACTGTCATTCTCTGCAAATATGCCACCGAGATTTGAAGCTGGAAAATACCTTGCTGGATGGCAGCCCAGCTCCACGCCTGAAAATTTGCGATTTTGGTTATTCTAAGTCATCCTTGCTGCATTCAAGGCCTAAATCAACTGTGGGAACTCCTGCATATATTGCACCTGAAGTTCTTTCTCGAAGAGAGTATGATGGCAAGTTGGCAGATGTGTGGTCATGTGGAGTAACCCTGTATGTTATGCTGGTGGGAGCTTATCCATTTGAAGACCAAGAAGATCCAAAGAATTTCAGGAAAACCATTAATAAAATAATGTCTGTTCAGTACAAGATCCCAGACTATGTTCACATATCTCAAGATTGTAGGCATCTCCTCTCTCGCATCTTTGTTGCAAATTCAGGAAGGAGGATCACCATTAAAGAAATCAAGAACCACCCGTGGTTTTTAAAGAACTTGCCTAGAGAGCTTACAGAAGCAGCTCAAACCGTTTACTACAGAAAAGAAAACCCAACCTTTTCTCTCCAAAGTATTGAAGCCATCATGAAGATAGTGGAGGAAGCCAAAAATCCTCCTCCAGTTTCCCGATCAATTGGAGGCTTTGGCTGGGGAGAAGAAGATGGTGATACAAAGGAAGATGTCGAAGGCGAGGAGGAAGAAGAAGAAGACGAGTATGACAAGACAGTCAAAGAAGTACATGCAAGTGGAGAAGTGCGCTTCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009791 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022622 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0042742 GO:0043167 GO:0043168 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070300 GO:0071704 GO:0090696 GO:0098542 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase

Protein Analysis

353

Amino Acids

40.37

Weight (kDa)

6.0

Isoelectric Point (pI)

47.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 260	7.3e-73	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	5 - 256	4.4e-32	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10940 AT1G10940 AT1G60940 AT1G60940 AT5G08590 AT5G08590 AT5G63650
fragaria_vesca	FvH4_5g28850 FvH4_5g28850 FvH4_5g28850 FvH4_5g28850 FvH4_5g28850
malus_domestica	MD08G1236500.v1.1 MD15G1428500.v1.1
prunus_persica	Prupe.1G573300_v2.0.a1 Prupe.1G573300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0221191
rosa_laevigata	RLG00000002171
rosa_multiflora	Rmu_sc0000324.1_g000005
rosa_roxburghii	Rroxscaffold_3G00238620
rosa_rugosa	Rorug07G0201000
rosa_samantha	Rh7BG331000 Rh7CG357900 Rh7DG338600
rosa_wichuraiana	Rw7G028930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1016
AccII	CGCG	1 cut(s)	111
AciI	CCGC	2 cut(s)	111, 239
AclWI	GGATC	4 cut(s)	40, 608, 661, 752
AcoI	YGGCCR	2 cut(s)	51, 112
AcsI	RAATTY	4 cut(s)	40, 420, 622, 730
AcuI	CTGAAG	2 cut(s)	525, 1036
AfaI	GTAC	3 cut(s)	11, 662, 1029
AgsI	TTSAA	5 cut(s)	190, 373, 462, 602, 869
AjnI	CCWGG	1 cut(s)	53
Alw21I	GWGCWC	2 cut(s)	87, 255
Alw26I	GTCTC	1 cut(s)	68
AlwI	GGATC	4 cut(s)	40, 608, 661, 752
Ama87I	CYCGRG	1 cut(s)	325
AoxI	GGCC	3 cut(s)	51, 112, 464
ApeKI	GCWGC	4 cut(s)	316, 399, 454, 812
ApoI	RAATTY	4 cut(s)	40, 420, 622, 730
AseI	ATTAAT	1 cut(s)	639
AspLEI	GCGC	1 cut(s)	1050
AsuHPI	GGTGA	2 cut(s)	739, 968
AvaI	CYCGRG	1 cut(s)	325
BalI	TGGCCA	1 cut(s)	53
BanII	GRGCYC	2 cut(s)	87, 255
BbsI	GAAGAC	2 cut(s)	609, 1005
Bbv12I	GWGCWC	2 cut(s)	87, 255
BbvI	GCAGC	4 cut(s)	328, 411, 441, 824
BccI	CCATC	5 cut(s)	162, 389, 524, 881, 947
BciT130I	CCWGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	68
BfaI	CTAG	2 cut(s)	300, 795
BfmI	CTRYAG	1 cut(s)	829
BisI	GCNGC	6 cut(s)	112, 240, 317, 400, 455, 813
BlsI	GCNGC	6 cut(s)	113, 241, 318, 401, 456, 814
Bme1390I	CCNGG	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	325
BmrFI	CCNGG	1 cut(s)	55
BmsI	GCATC	2 cut(s)	712, 726
BpiI	GAAGAC	2 cut(s)	609, 1005
BpmI	CTGGAG	1 cut(s)	894
BpuEI	CTTGAG	1 cut(s)	675
Bsa29I	ATCGAT	1 cut(s)	157
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	1 cut(s)	773
Bse1I	ACTGG	1 cut(s)	911
Bse3DI	GCAATG	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	55
BseCI	ATCGAT	1 cut(s)	157
BseDI	CCNNGG	1 cut(s)	773
BseGI	GGATG	2 cut(s)	400, 446
BseMI	GCAATG	1 cut(s)	277
BseNI	ACTGG	1 cut(s)	911
BseRI	GAGGAG	3 cut(s)	698, 897, 998
BseXI	GCAGC	4 cut(s)	328, 411, 441, 824
BseYI	CCCAGC	2 cut(s)	403, 939
Bsh1236I	CGCG	1 cut(s)	111
Bsh1285I	CGRYCG	1 cut(s)	161
BshFI	GGCC	3 cut(s)	53, 114, 466
BshVI	ATCGAT	1 cut(s)	157
BsiEI	CGRYCG	1 cut(s)	161
BsiHKAI	GWGCWC	2 cut(s)	87, 255
BsiHKCI	CYCGRG	1 cut(s)	325
BsmAI	GTCTC	1 cut(s)	68
BsmI	GAATGC	1 cut(s)	457
BsnI	GGCC	3 cut(s)	53, 114, 466
Bso31I	GGTCTC	1 cut(s)	68
BsoBI	CYCGRG	1 cut(s)	325
Bsp1286I	GDGCHC	2 cut(s)	87, 255
Bsp143I	GATC	6 cut(s)	32, 158, 613, 666, 744, 920
BspACI	CCGC	2 cut(s)	111, 239
BspANI	GGCC	3 cut(s)	53, 114, 466
BspDI	ATCGAT	1 cut(s)	157
BspFNI	CGCG	1 cut(s)	111
BspHI	TCATGA	1 cut(s)	876
BspPI	GGATC	4 cut(s)	40, 608, 661, 752
BspTNI	GGTCTC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	911
BssECI	CCNNGG	1 cut(s)	773
BssMI	GATC	6 cut(s)	32, 158, 613, 666, 744, 920
Bst2UI	CCWGG	1 cut(s)	55
Bst4CI	ACNGT	4 cut(s)	341, 478, 823, 1018
Bst6I	CTCTTC	1 cut(s)	514
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstDEI	CTNAG	1 cut(s)	441
BstDSI	CCRYGG	1 cut(s)	773
BstF5I	GGATG	2 cut(s)	400, 446
BstFNI	CGCG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	1050
BstKTI	GATC	6 cut(s)	35, 161, 616, 669, 747, 923
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	6 cut(s)	32, 158, 613, 666, 744, 920
BstMCI	CGRYCG	1 cut(s)	161
BstMWI	GCNNNNNNNGC	3 cut(s)	463, 497, 799
BstNI	CCWGG	1 cut(s)	55
BstNSI	RCATGY	1 cut(s)	1034
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	1 cut(s)	829
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	4 cut(s)	328, 411, 441, 824
BstV2I	GAAGAC	2 cut(s)	609, 1005
BstX2I	RGATCY	3 cut(s)	32, 613, 666
BstYI	RGATCY	3 cut(s)	32, 613, 666
Bsu15I	ATCGAT	1 cut(s)	157
BsuRI	GGCC	3 cut(s)	53, 114, 466
BsuTUI	ATCGAT	1 cut(s)	157
BtgI	CCRYGG	1 cut(s)	773
BtsCI	GGATG	2 cut(s)	400, 446
BtsIMutI	CAGTG	1 cut(s)	292
CciI	TCATGA	1 cut(s)	876
CfoI	GCGC	1 cut(s)	1050
ClaI	ATCGAT	1 cut(s)	157
Csp6I	GTAC	3 cut(s)	10, 661, 1028
CviAII	CATG	4 cut(s)	94, 555, 877, 1031
CviQI	GTAC	3 cut(s)	10, 661, 1028
DdeI	CTNAG	1 cut(s)	441
DpnI	GATC	6 cut(s)	34, 160, 615, 668, 746, 922
DpnII	GATC	6 cut(s)	32, 158, 613, 666, 744, 920
DraI	TTTAAA	1 cut(s)	783
DrdI	GACNNNNNNGTC	1 cut(s)	1016
DseDI	GACNNNNNNGTC	1 cut(s)	1016
EaeI	YGGCCR	2 cut(s)	51, 112
Eam1104I	CTCTTC	1 cut(s)	514
EarI	CTCTTC	1 cut(s)	514
Ecl136II	GAGCTC	2 cut(s)	85, 253
Eco147I	AGGCCT	1 cut(s)	466
Eco24I	GRGCYC	2 cut(s)	87, 255
Eco31I	GGTCTC	1 cut(s)	68
Eco53kI	GAGCTC	2 cut(s)	85, 253
Eco57I	CTGAAG	2 cut(s)	525, 1036
Eco88I	CYCGRG	1 cut(s)	325
EcoICRI	GAGCTC	2 cut(s)	85, 253
EcoRII	CCWGG	1 cut(s)	53
EcoT38I	GRGCYC	2 cut(s)	87, 255
FaeI	CATG	4 cut(s)	97, 558, 880, 1034
FalI	AAGNNNNNCTT	2 cut(s)	434, 466
FatI	CATG	4 cut(s)	93, 554, 876, 1030
Fnu4HI	GCNGC	6 cut(s)	112, 240, 317, 400, 455, 813
FokI	GGATG	2 cut(s)	407, 433
FriOI	GRGCYC	2 cut(s)	87, 255
Fsp4HI	GCNGC	6 cut(s)	112, 240, 317, 400, 455, 813
FspBI	CTAG	2 cut(s)	300, 795
GlaI	GCGC	1 cut(s)	1049
GluI	GCNGC	6 cut(s)	112, 240, 317, 400, 455, 813
GsaI	CCCAGC	2 cut(s)	407, 943
GsuI	CTGGAG	1 cut(s)	894
HaeIII	GGCC	3 cut(s)	53, 114, 466
HhaI	GCGC	1 cut(s)	1050
Hin1II	CATG	4 cut(s)	97, 558, 880, 1034
Hin6I	GCGC	1 cut(s)	1048
HinP1I	GCGC	1 cut(s)	1048
HinfI	GANTC	1 cut(s)	205
HphI	GGTGA	2 cut(s)	739, 968
Hpy166II	GTNNAC	2 cut(s)	682, 826
Hpy188III	TCNNGA	8 cut(s)	327, 516, 628, 692, 735, 763, 877, 918
Hpy8I	GTNNAC	2 cut(s)	682, 826
HpyAV	CCTTC	3 cut(s)	273, 732, 971
HpyCH4III	ACNGT	4 cut(s)	341, 478, 823, 1018
HpyCH4V	TGCA	8 cut(s)	270, 275, 352, 457, 491, 500, 728, 1034
HpyF10VI	GCNNNNNNNGC	3 cut(s)	463, 497, 799
HpyF3I	CTNAG	1 cut(s)	441
Hsp92II	CATG	4 cut(s)	97, 558, 880, 1034
HspAI	GCGC	1 cut(s)	1048
Kzo9I	GATC	6 cut(s)	32, 158, 613, 666, 744, 920
LmnI	GCTCC	2 cut(s)	412, 587
Lsp1109I	GCAGC	4 cut(s)	328, 411, 441, 824
LweI	GCATC	2 cut(s)	712, 726
MaeI	CTAG	2 cut(s)	300, 795
MaeIII	GTNAC	1 cut(s)	562
MalI	GATC	6 cut(s)	34, 160, 615, 668, 746, 922
MboI	GATC	6 cut(s)	32, 158, 613, 666, 744, 920
MfeI	CAATTG	1 cut(s)	924
MflI	RGATCY	3 cut(s)	32, 613, 666
MhlI	GDGCHC	2 cut(s)	87, 255
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	5 cut(s)	40, 420, 622, 730, 924
MluNI	TGGCCA	1 cut(s)	53
MlyI	GAGTC	1 cut(s)	199
Mox20I	TGGCCA	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	53
MseI	TTAA	4 cut(s)	21, 639, 753, 782
MslI	CAYNNNNRTG	1 cut(s)	1035
Msp20I	TGGCCA	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	1056
MspR9I	CCNGG	1 cut(s)	55
MunI	CAATTG	1 cut(s)	924
Mva1269I	GAATGC	1 cut(s)	457
MvaI	CCWGG	1 cut(s)	55
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	463, 497, 799
NdeII	GATC	6 cut(s)	32, 158, 613, 666, 744, 920
NlaIII	CATG	4 cut(s)	97, 558, 880, 1034
NspI	RCATGY	1 cut(s)	1034
PagI	TCATGA	1 cut(s)	876
PceI	AGGCCT	1 cut(s)	466
PctI	GAATGC	1 cut(s)	457
PkrI	GCNGC	6 cut(s)	113, 241, 318, 401, 456, 814
Ple19I	CGATCG	1 cut(s)	161
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
PshBI	ATTAAT	1 cut(s)	639
Psp124BI	GAGCTC	2 cut(s)	87, 255
Psp6I	CCWGG	1 cut(s)	53
PspFI	CCCAGC	2 cut(s)	403, 939
PspGI	CCWGG	1 cut(s)	53
PsuI	RGATCY	3 cut(s)	32, 613, 666
PvuI	CGATCG	1 cut(s)	161
PvuII	CAGCTG	1 cut(s)	1056
RsaI	GTAC	3 cut(s)	11, 662, 1029
RsaNI	GTAC	3 cut(s)	10, 661, 1028
RseI	CAYNNNNRTG	1 cut(s)	1035
SacI	GAGCTC	2 cut(s)	87, 255
SaqAI	TTAA	4 cut(s)	21, 639, 753, 782
SatI	GCNGC	6 cut(s)	112, 240, 317, 400, 455, 813
Sau3AI	GATC	6 cut(s)	32, 158, 613, 666, 744, 920
SchI	GAGTC	1 cut(s)	199
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	2 cut(s)	87, 255
SfaNI	GCATC	2 cut(s)	712, 726
SfcI	CTRYAG	1 cut(s)	829
SmiMI	CAYNNNNRTG	1 cut(s)	1035
SmlI	CTYRAG	1 cut(s)	690
SmoI	CTYRAG	1 cut(s)	690
Sse9I	AATT	5 cut(s)	40, 420, 622, 730, 924
SseBI	AGGCCT	1 cut(s)	466
SsiI	CCGC	2 cut(s)	111, 239
SspMI	CTAG	2 cut(s)	300, 795
SstI	GAGCTC	2 cut(s)	87, 255
StuI	AGGCCT	1 cut(s)	466
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	4 cut(s)	341, 478, 823, 1018
TaqI	TCGA	4 cut(s)	105, 157, 517, 975
TasI	AATT	5 cut(s)	40, 420, 622, 730, 924
TatI	WGTACW	2 cut(s)	660, 1027
TauI	GCSGC	2 cut(s)	114, 242
Tru1I	TTAA	4 cut(s)	21, 639, 753, 782
Tru9I	TTAA	4 cut(s)	21, 639, 753, 782
TscAI	CASTG	1 cut(s)	292
TseI	GCWGC	4 cut(s)	316, 399, 454, 812
TspDTI	ATGAA	2 cut(s)	110, 893
TspRI	CASTG	1 cut(s)	292
VspI	ATTAAT	1 cut(s)	639
XapI	RAATTY	4 cut(s)	40, 420, 622, 730
XceI	RCATGY	1 cut(s)	1034
XspI	CTAG	2 cut(s)	300, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.