FvH4_5g28850
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
19967684 .. 19971917
4234 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g28850.t2

Sequence Viewer

Length: 1059 bp
ATGGAAAAGTATGAGCTCGTCAAGGACATAGGATCCGGCAATTTCGGCGTGGCCAGGCTCATGCGCAACAAAGAGACCAAAGAGCTCGTCGCCATGAAATACATCGACCGCGGCCTCAAGATTGATGAGAATGTTGCCAGAGAAATCATCAACCACAGATCACTCCGCCACCCCAACATCATCCGATTCCGAGAGGTGGTTTTGACTCCTACGCATCTTGCTATTGTTATGGAGTATGCCGCCGGCGGAGAGCTCTTTGAACGTATTTGCAATGCTGGCAGGTTCAGCGAAGATGAGGCTAGATATTTTTTCCAGCAGCTTATCTCTGGTGTTAGCTATTGTCATTCTCTGCAAATATGCCATCGAGATTTGAAGCTCGAGAACACCTTGCTTGATGGCAGCCCCGCTCCGCGCCTCAAAATCTGTGATTTCGGTTATTCTAAGTCATCTTTGCTGCATTCACGACCAAAGTCAACTGTGGGAACTCCAGCGTATATTGCACCTGAGGTTCTTTCTCGAAGAGAGTATGACGGCAAGTTGGCAGATGTATGGTCTTGTGGGGTGACCCTATATGTTATGCTGGTGGGAGCATATCCATTTGAGGACCAAGAAGATCCAAAGAATTTCAGAAAAACCATTAATCGAATAATGGCTGTTCAGTACAAGATTCCTGACTATGTTCACATATCTCAAGATTGTAGGCATCTCCTCTCTCGCATATTTGTTGCAAATCCAGCAAGGAGGATCACCATTAAAGAAATCAAGAACCACCCATGGTTTTTGAAGAACTTGCCGAGAGAGCTCACAGAAGCAGCTCAAACCATGTACTACAGAAAAGAGAACCCAACCTTTTCCCTCCAAAGTGTCGAAGACATCATGAAGATAGTGGAAGAAGCCAAAAATCCTCCCCCAGTTTCCCGGTCGGTTGGAGGCTTTGGCTGGGGAGGAGAAGAAGATGGTGATGCAAAGGATGAGGTTGAGGAGGGCGAGGATGAAGAAGATGAGTATGAAAAGAGAGTCAAAGAAGCACATCAAAGTGGGGAAGTACGTGTTGTCTGA

Protein Analysis

353

Amino Acids

40.4

Weight (kDa)

6.12

Isoelectric Point (pI)

44.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 4 - 246 4.8e-66 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 5 - 214 5.4e-30 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 65
Acc36I ACCTGC 1 cut(s) 270
AccBSI CCGCTC 1 cut(s) 407
AccII CGCG 2 cut(s) 111, 412
AciI CCGC 7 cut(s) 109, 111, 166, 240, 246, 405, 410
AclWI GGATC 4 cut(s) 27, 40, 608, 752
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 1 cut(s) 622
AfaI GTAC 3 cut(s) 662, 827, 1047
AfiI CCNNNNNNNGG 1 cut(s) 196
AflIII ACRYGT 1 cut(s) 1048
AgsI TTSAA 3 cut(s) 260, 373, 784
AjnI CCWGG 1 cut(s) 53
AluBI AGCT 8 cut(s) 16, 85, 253, 319, 336, 376, 802, 815
AluI AGCT 8 cut(s) 16, 85, 253, 319, 336, 376, 802, 815
Alw21I GWGCWC 4 cut(s) 18, 87, 255, 804
Alw26I GTCTC 1 cut(s) 68
AlwI GGATC 4 cut(s) 27, 40, 608, 752
Ama87I CYCGRG 1 cut(s) 377
AoxI GGCC 2 cut(s) 51, 112
ApeKI GCWGC 4 cut(s) 316, 399, 454, 812
ApoI RAATTY 1 cut(s) 622
ArsI GACNNNNNNTTYG 2 cut(s) 72, 104
AseI ATTAAT 1 cut(s) 639
AspLEI GCGC 2 cut(s) 66, 414
AspS9I GGNCC 1 cut(s) 604
AsuC2I CCSGG 1 cut(s) 919
AsuHPI GGTGA 3 cut(s) 574, 739, 971
AvaI CYCGRG 1 cut(s) 377
AvaII GGWCC 1 cut(s) 604
AxyI CCTNAGG 1 cut(s) 504
BalI TGGCCA 1 cut(s) 53
BamHI GGATCC 1 cut(s) 32
BanII GRGCYC 4 cut(s) 18, 87, 255, 804
BbsI GAAGAC 1 cut(s) 876
Bbv12I GWGCWC 4 cut(s) 18, 87, 255, 804
BbvI GCAGC 4 cut(s) 328, 411, 441, 824
BccI CCATC 3 cut(s) 369, 389, 950
BceAI ACGGC 1 cut(s) 547
BciT130I CCWGG 1 cut(s) 55
BcnI CCSGG 1 cut(s) 919
BcoDI GTCTC 1 cut(s) 68
BfaI CTAG 1 cut(s) 300
BfmI CTRYAG 1 cut(s) 829
BfuAI ACCTGC 1 cut(s) 270
BisI GCNGC 6 cut(s) 112, 240, 317, 400, 455, 813
BlsI GCNGC 6 cut(s) 113, 241, 318, 401, 456, 814
Bme1390I CCNGG 2 cut(s) 55, 919
Bme18I GGWCC 1 cut(s) 604
BmeT110I CYCGRG 1 cut(s) 377
BmgT120I GGNCC 1 cut(s) 604
BmiI GGNNCC 1 cut(s) 34
BmrFI CCNGG 2 cut(s) 55, 919
BmrI ACTGGG 1 cut(s) 905
BmsI GCATC 3 cut(s) 223, 712, 952
BmuI ACTGGG 1 cut(s) 905
BoxI GACNNNNGTC 1 cut(s) 469
BpiI GAAGAC 1 cut(s) 876
BpmI CTGGAG 1 cut(s) 471
BpuEI CTTGAG 2 cut(s) 101, 675
BpuMI CCSGG 1 cut(s) 919
BsaAI YACGTR 1 cut(s) 1049
BsaI GGTCTC 1 cut(s) 68
BsaJI CCNNGG 2 cut(s) 109, 773
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 911
Bse21I CCTNAGG 1 cut(s) 504
Bse3DI GCAATG 1 cut(s) 277
BseBI CCWGG 1 cut(s) 55
BseDI CCNNGG 2 cut(s) 109, 773
BseGI GGATG 3 cut(s) 180, 976, 997
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMI GCAATG 1 cut(s) 277
BseMII CTCAG 1 cut(s) 495
BseNI ACTGG 1 cut(s) 911
BseRI GAGGAG 3 cut(s) 698, 960, 995
BseXI GCAGC 4 cut(s) 328, 411, 441, 824
BseYI CCCAGC 1 cut(s) 939
Bsh1236I CGCG 2 cut(s) 111, 412
Bsh1285I CGRYCG 2 cut(s) 109, 923
BshFI GGCC 2 cut(s) 53, 114
BsiEI CGRYCG 2 cut(s) 109, 923
BsiHKAI GWGCWC 4 cut(s) 18, 87, 255, 804
BsiHKCI CYCGRG 1 cut(s) 377
BsiSI CCGG 3 cut(s) 36, 243, 919
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 1 cut(s) 68
BsmI GAATGC 1 cut(s) 457
BsnI GGCC 2 cut(s) 53, 114
Bso31I GGTCTC 1 cut(s) 68
BsoBI CYCGRG 1 cut(s) 377
Bsp1286I GDGCHC 4 cut(s) 18, 87, 255, 804
Bsp143I GATC 4 cut(s) 32, 158, 613, 744
Bsp19I CCATGG 1 cut(s) 773
BspACI CCGC 7 cut(s) 109, 111, 166, 240, 246, 405, 410
BspANI GGCC 2 cut(s) 53, 114
BspCNI CTCAG 1 cut(s) 496
BspFNI CGCG 2 cut(s) 111, 412
BspHI TCATGA 1 cut(s) 876
BspLI GGNNCC 1 cut(s) 34
BspMI ACCTGC 1 cut(s) 270
BspPI GGATC 4 cut(s) 27, 40, 608, 752
BspTNI GGTCTC 1 cut(s) 68
BsrBI CCGCTC 1 cut(s) 407
BsrDI GCAATG 1 cut(s) 277
BsrFI RCCGGY 1 cut(s) 242
BsrI ACTGG 1 cut(s) 911
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 2 cut(s) 109, 773
BssMI GATC 4 cut(s) 32, 158, 613, 744
BssT1I CCWWGG 1 cut(s) 773
Bst2UI CCWGG 1 cut(s) 55
Bst4CI ACNGT 1 cut(s) 478
Bst6I CTCTTC 1 cut(s) 514
BstBAI YACGTR 1 cut(s) 1049
BstC8I GCNNGC 2 cut(s) 244, 277
BstDEI CTNAG 2 cut(s) 441, 504
BstDSI CCRYGG 2 cut(s) 109, 773
BstEII GGTNACC 1 cut(s) 562
BstF5I GGATG 3 cut(s) 180, 976, 997
BstFNI CGCG 2 cut(s) 111, 412
BstHHI GCGC 2 cut(s) 66, 414
BstKTI GATC 4 cut(s) 35, 161, 616, 747
BstMAI GTCTC 1 cut(s) 68
BstMBI GATC 4 cut(s) 32, 158, 613, 744
BstMCI CGRYCG 2 cut(s) 109, 923
BstMWI GCNNNNNNNGC 6 cut(s) 45, 276, 285, 497, 734, 799
BstNI CCWGG 1 cut(s) 55
BstPAI GACNNNNGTC 1 cut(s) 469
BstPI GGTNACC 1 cut(s) 562
BstSCI CCNGG 2 cut(s) 53, 917
BstSFI CTRYAG 1 cut(s) 829
BstUI CGCG 2 cut(s) 111, 412
BstV1I GCAGC 4 cut(s) 328, 411, 441, 824
BstV2I GAAGAC 1 cut(s) 876
BstX2I RGATCY 2 cut(s) 32, 613
BstYI RGATCY 2 cut(s) 32, 613
Bsu36I CCTNAGG 1 cut(s) 504
BsuRI GGCC 2 cut(s) 53, 114
BtgI CCRYGG 2 cut(s) 109, 773
BtsCI GGATG 3 cut(s) 180, 976, 997
BveI ACCTGC 1 cut(s) 270
Cac8I GCNNGC 2 cut(s) 244, 277
CciI TCATGA 1 cut(s) 876
CfoI GCGC 2 cut(s) 66, 414
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 604
Cfr42I CCGCGG 1 cut(s) 112
Csp6I GTAC 3 cut(s) 661, 826, 1046
CviAII CATG 5 cut(s) 61, 94, 774, 823, 877
CviQI GTAC 3 cut(s) 661, 826, 1046
DdeI CTNAG 2 cut(s) 441, 504
DpnI GATC 4 cut(s) 34, 160, 615, 746
DpnII GATC 4 cut(s) 32, 158, 613, 744
EaeI YGGCCR 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 514
EarI CTCTTC 1 cut(s) 514
EciI GGCGGA 2 cut(s) 155, 261
Ecl136II GAGCTC 4 cut(s) 16, 85, 253, 802
Eco130I CCWWGG 1 cut(s) 773
Eco24I GRGCYC 4 cut(s) 18, 87, 255, 804
Eco31I GGTCTC 1 cut(s) 68
Eco47I GGWCC 1 cut(s) 604
Eco53kI GAGCTC 4 cut(s) 16, 85, 253, 802
Eco81I CCTNAGG 1 cut(s) 504
Eco88I CYCGRG 1 cut(s) 377
Eco91I GGTNACC 1 cut(s) 562
EcoICRI GAGCTC 4 cut(s) 16, 85, 253, 802
EcoO65I GGTNACC 1 cut(s) 562
EcoRII CCWGG 1 cut(s) 53
EcoT14I CCWWGG 1 cut(s) 773
EcoT38I GRGCYC 4 cut(s) 18, 87, 255, 804
ErhI CCWWGG 1 cut(s) 773
FaeI CATG 5 cut(s) 64, 97, 777, 826, 880
FatI CATG 5 cut(s) 60, 93, 773, 822, 876
FauI CCCGC 1 cut(s) 412
Fnu4HI GCNGC 6 cut(s) 112, 240, 317, 400, 455, 813
FokI GGATG 3 cut(s) 167, 983, 1004
FriOI GRGCYC 4 cut(s) 18, 87, 255, 804
Fsp4HI GCNGC 6 cut(s) 112, 240, 317, 400, 455, 813
FspBI CTAG 1 cut(s) 300
FspI TGCGCA 1 cut(s) 65
GlaI GCGC 2 cut(s) 65, 413
GluI GCNGC 6 cut(s) 112, 240, 317, 400, 455, 813
GsaI CCCAGC 1 cut(s) 943
GsuI CTGGAG 1 cut(s) 471
HaeIII GGCC 2 cut(s) 53, 114
HapII CCGG 3 cut(s) 36, 243, 919
HhaI GCGC 2 cut(s) 66, 414
Hin1II CATG 5 cut(s) 64, 97, 777, 826, 880
Hin6I GCGC 2 cut(s) 64, 412
HinP1I GCGC 2 cut(s) 64, 412
HincII GTYRAC 1 cut(s) 474
HindII GTYRAC 1 cut(s) 474
HinfI GANTC 4 cut(s) 186, 205, 667, 1017
HpaII CCGG 3 cut(s) 36, 243, 919
HphI GGTGA 3 cut(s) 574, 739, 971
Hpy166II GTNNAC 2 cut(s) 474, 682
Hpy188I TCNGA 4 cut(s) 185, 191, 629, 1058
Hpy188III TCNNGA 9 cut(s) 118, 365, 379, 462, 516, 671, 692, 763, 877
Hpy8I GTNNAC 2 cut(s) 474, 682
Hpy99I CGWCG 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 478
HpyCH4IV ACGT 2 cut(s) 262, 1048
HpyCH4V TGCA 6 cut(s) 270, 352, 457, 500, 728, 965
HpyF10VI GCNNNNNNNGC 6 cut(s) 45, 276, 285, 497, 734, 799
HpyF3I CTNAG 2 cut(s) 441, 504
HpySE526I ACGT 2 cut(s) 262, 1048
Hsp92II CATG 5 cut(s) 64, 97, 777, 826, 880
HspAI GCGC 2 cut(s) 64, 412
KroI GCCGGC 1 cut(s) 242
KroNI GCCGGC 1 cut(s) 244
KspI CCGCGG 1 cut(s) 112
Kzo9I GATC 4 cut(s) 32, 158, 613, 744
LmnI GCTCC 2 cut(s) 412, 587
Lsp1109I GCAGC 4 cut(s) 328, 411, 441, 824
LweI GCATC 3 cut(s) 223, 712, 952
MaeI CTAG 1 cut(s) 300
MaeII ACGT 2 cut(s) 262, 1048
MaeIII GTNAC 1 cut(s) 562
MalI GATC 4 cut(s) 34, 160, 615, 746
MbiI CCGCTC 1 cut(s) 407
MboI GATC 4 cut(s) 32, 158, 613, 744
MflI RGATCY 2 cut(s) 32, 613
MhlI GDGCHC 4 cut(s) 18, 87, 255, 804
MlsI TGGCCA 1 cut(s) 53
MluCI AATT 2 cut(s) 40, 622
MluNI TGGCCA 1 cut(s) 53
MlyI GAGTC 2 cut(s) 199, 1026
MmeI TCCRAC 1 cut(s) 907
Mox20I TGGCCA 1 cut(s) 53
MreI CGCCGGCG 1 cut(s) 242
MroNI GCCGGC 1 cut(s) 242
MscI TGGCCA 1 cut(s) 53
MseI TTAA 2 cut(s) 639, 753
MslI CAYNNNNRTG 1 cut(s) 1035
Msp20I TGGCCA 1 cut(s) 53
MspA1I CMGCKG 1 cut(s) 111
MspI CCGG 3 cut(s) 36, 243, 919
MspR9I CCNGG 2 cut(s) 55, 919
Mva1269I GAATGC 1 cut(s) 457
MvaI CCWGG 1 cut(s) 55
MvnI CGCG 2 cut(s) 111, 412
MwoI GCNNNNNNNGC 6 cut(s) 45, 276, 285, 497, 734, 799
NaeI GCCGGC 1 cut(s) 244
NciI CCSGG 1 cut(s) 919
NcoI CCATGG 1 cut(s) 773
NdeII GATC 4 cut(s) 32, 158, 613, 744
NgoMIV GCCGGC 1 cut(s) 242
NlaIII CATG 5 cut(s) 64, 97, 777, 826, 880
NlaIV GGNNCC 1 cut(s) 34
NmeAIII GCCGAG 1 cut(s) 819
NmuCI GTSAC 1 cut(s) 562
NsbI TGCGCA 1 cut(s) 65
PaeR7I CTCGAG 1 cut(s) 377
PagI TCATGA 1 cut(s) 876
PctI GAATGC 1 cut(s) 457
PdiI GCCGGC 1 cut(s) 244
PfeI GAWTC 2 cut(s) 186, 667
PkrI GCNGC 6 cut(s) 113, 241, 318, 401, 456, 814
PleI GAGTC 2 cut(s) 199, 1025
PpsI GAGTC 2 cut(s) 199, 1025
Ppu21I YACGTR 1 cut(s) 1049
PshAI GACNNNNGTC 1 cut(s) 469
PshBI ATTAAT 1 cut(s) 639
Psp124BI GAGCTC 4 cut(s) 18, 87, 255, 804
Psp6I CCWGG 1 cut(s) 53
PspEI GGTNACC 1 cut(s) 562
PspFI CCCAGC 1 cut(s) 939
PspGI CCWGG 1 cut(s) 53
PspN4I GGNNCC 1 cut(s) 34
PspPI GGNCC 1 cut(s) 604
PsuI RGATCY 2 cut(s) 32, 613
RsaI GTAC 3 cut(s) 662, 827, 1047
RsaNI GTAC 3 cut(s) 661, 826, 1046
RseI CAYNNNNRTG 1 cut(s) 1035
SacI GAGCTC 4 cut(s) 18, 87, 255, 804
SacII CCGCGG 1 cut(s) 112
SaqAI TTAA 2 cut(s) 639, 753
SatI GCNGC 6 cut(s) 112, 240, 317, 400, 455, 813
Sau3AI GATC 4 cut(s) 32, 158, 613, 744
Sau96I GGNCC 1 cut(s) 604
SchI GAGTC 2 cut(s) 199, 1026
ScrFI CCNGG 2 cut(s) 55, 919
SduI GDGCHC 4 cut(s) 18, 87, 255, 804
SfaNI GCATC 3 cut(s) 223, 712, 952
SfcI CTRYAG 1 cut(s) 829
Sfr274I CTCGAG 1 cut(s) 377
Sfr303I CCGCGG 1 cut(s) 112
SgrAI CRCCGGYG 1 cut(s) 242
SgrBI CCGCGG 1 cut(s) 112
SinI GGWCC 1 cut(s) 604
SlaI CTCGAG 1 cut(s) 377
SmiMI CAYNNNNRTG 1 cut(s) 1035
SmlI CTYRAG 3 cut(s) 116, 377, 690
SmoI CTYRAG 3 cut(s) 116, 377, 690
Sse9I AATT 2 cut(s) 40, 622
SsiI CCGC 7 cut(s) 109, 111, 166, 240, 246, 405, 410
SspMI CTAG 1 cut(s) 300
SstI GAGCTC 4 cut(s) 18, 87, 255, 804
StyD4I CCNGG 2 cut(s) 53, 917
StyI CCWWGG 1 cut(s) 773
TaaI ACNGT 1 cut(s) 478
TaiI ACGT 2 cut(s) 265, 1051
TaqI TCGA 6 cut(s) 105, 364, 378, 517, 643, 867
TasI AATT 2 cut(s) 40, 622
TatI WGTACW 2 cut(s) 660, 825
TauI GCSGC 2 cut(s) 114, 242
TfiI GAWTC 2 cut(s) 186, 667
Tru1I TTAA 2 cut(s) 639, 753
Tru9I TTAA 2 cut(s) 639, 753
TseFI GTSAC 1 cut(s) 562
TseI GCWGC 4 cut(s) 316, 399, 454, 812
Tsp45I GTSAC 1 cut(s) 562
TspDTI ATGAA 4 cut(s) 110, 893, 1008, 1023
VpaK11BI GGWCC 1 cut(s) 604
VspI ATTAAT 1 cut(s) 639
XapI RAATTY 1 cut(s) 622
XhoI CTCGAG 1 cut(s) 377
XspI CTAG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.