Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006983

Physical Location & Seq

Genomic Coordinates Reverse (-)

22439063 .. 22442221

Gene Structure 3159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G60940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGACAAGTACGAGCTTGTTAAAGACATCGGTGCTGGGAATTTTGGAGTGGCGAGGCTCATGAGAGTCAAAAACTCCAAGGAACTCGTTGCTATGAAGTACATCGAGCGTGGACCTAAGATTGATGAGAACGTGGCGAGAGAGATTATTAACCACAGATCACTTCGTCATCCCAATATTATCCGGTTTAAGGAGGTGGTTTTGACACCAACGCACATCGCCATTGCTATGGAATATGCTGCTGGCGGTGAGCTATTTGAGCGTATATGTAGCGCTGGAAGATTCAGTGAGGATGAGGCAAGATACTTTTTCCAGCAGCTTATCTCAGGAGTCAGCTATTGTCATGCTATGCAAATATGCCACAGAGATCTGAAGCTTGAAAATACCCTCTTAGATGGAAGTCCTGCTCCACGCCTGAAGATCTGTGATTTTGGTTATTCCAAGTCCTCACTGTTGCACTCTATGCCCAAATCAACTGTTGGAACTCCAGCATATATTGCACCTGAGGTTCTTTCTCGCGGAGAGTATGATGGCAAGATGGCTGATGTATGGTCTTGTGGTGTGACTCTTTATGTCATGCTGGTGGGAGCATACCCATTTGAAGACCAAGAGGATCCCAAAAACTTCAAAAAAACAATACAAAGAATAATGGCTGTCAAGTACAAGATCCCGGACTATGTCCATATCTCACAAGATTGCAAACATCTCCTCTCCCGTATATTTGTCACCAACTCGAATAAGAGGATTACGATAGGTGACATCAAGAAACATCCATGGTTCCTAAAGAACCTGCCAAGGGAACTTACAGAAATAGCTCAAGCTGCATACTTCAGGAAAGAGAACCCGACATTCTCACTCCAAAGCGTCGAAGAGATAATGAAGATTGTGGAAGAGGCAAAAACTCCAGCTCGTGTTTCTCGGTCGATTGGAGCATTTGGGTGGGGAGGAGGAGAAGATGCCGAGGGCAAGGAGGAAGATGCAGAGGAAGAAGTTGAGGAAGTAGAAGAAGAAGAAGACGAAGAAGATGAGTATGATAAGACGGTGAAGCAAGTGCATGCTAGCATGGGAGAAGTCCGAGTCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009791 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022622 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0042742 GO:0043167 GO:0043168 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070300 GO:0071704 GO:0090696 GO:0098542 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase

Protein Analysis

361

Amino Acids

41.04

Weight (kDa)

5.62

Isoelectric Point (pI)

45.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 260	6.9e-70	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	5 - 256	9.3e-31	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10940 AT1G10940 AT1G60940 AT1G60940 AT5G08590 AT5G08590 AT5G63650
fragaria_vesca	FvH4_5g28850 FvH4_5g28850 FvH4_5g28850 FvH4_5g28850 FvH4_5g28850
malus_domestica	MD08G1236500.v1.1 MD15G1428500.v1.1
prunus_persica	Prupe.1G573300_v2.0.a1 Prupe.1G573300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0221191
rosa_laevigata	RLG00000002171
rosa_multiflora	Rmu_sc0000324.1_g000005
rosa_roxburghii	Rroxscaffold_3G00238620
rosa_rugosa	Rorug07G0201000
rosa_samantha	Rh7BG331000 Rh7CG357900 Rh7DG338600
rosa_wichuraiana	Rw7G028930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	798
AccII	CGCG	1 cut(s)	519
AciI	CCGC	2 cut(s)	246, 519
AclWI	GGATC	3 cut(s)	608, 621, 661
AcsI	RAATTY	1 cut(s)	40
AcuI	CTGAAG	3 cut(s)	392, 437, 814
AfaI	GTAC	3 cut(s)	11, 101, 662
AfeI	AGCGCT	1 cut(s)	274
AfiI	CCNNNNNNNGG	2 cut(s)	190, 796
AgsI	TTSAA	3 cut(s)	380, 602, 628
AluBI	AGCT	8 cut(s)	16, 253, 319, 336, 376, 815, 821, 908
AluI	AGCT	8 cut(s)	16, 253, 319, 336, 376, 815, 821, 908
AlwI	GGATC	3 cut(s)	608, 621, 661
Aor51HI	AGCGCT	1 cut(s)	274
ApeKI	GCWGC	3 cut(s)	239, 316, 821
ApoI	RAATTY	1 cut(s)	40
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	113
AsuC2I	CCSGG	1 cut(s)	671
AsuHPI	GGTGA	4 cut(s)	260, 718, 767, 1054
AsuNHI	GCTAGC	1 cut(s)	1058
AvaII	GGWCC	1 cut(s)	113
AxyI	CCTNAGG	1 cut(s)	504
BamHI	GGATCC	1 cut(s)	613
BauI	CACGAG	1 cut(s)	909
BbsI	GAAGAC	2 cut(s)	609, 1020
BbvI	GCAGC	3 cut(s)	226, 328, 808
BccI	CCATC	3 cut(s)	389, 524, 532
BcnI	CCSGG	1 cut(s)	671
BfaI	CTAG	1 cut(s)	1059
BfoI	RGCGCY	1 cut(s)	276
BfuAI	ACCTGC	1 cut(s)	798
BglII	AGATCT	2 cut(s)	367, 420
BisI	GCNGC	3 cut(s)	240, 317, 822
BlsI	GCNGC	3 cut(s)	241, 318, 823
Bme1390I	CCNGG	1 cut(s)	671
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	2 cut(s)	615, 779
BmrFI	CCNGG	1 cut(s)	671
BmsI	GCATC	2 cut(s)	946, 967
BmtI	GCTAGC	1 cut(s)	1062
BpiI	GAAGAC	2 cut(s)	609, 1020
BpmI	CTGGAG	2 cut(s)	471, 888
BpuEI	CTTGAG	1 cut(s)	801
BpuMI	CCSGG	1 cut(s)	671
BsaJI	CCNNGG	4 cut(s)	78, 773, 794, 960
BsaWI	WCCGGW	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 796
Bse21I	CCTNAGG	1 cut(s)	504
Bse3DI	GCAATG	1 cut(s)	222
BseDI	CCNNGG	4 cut(s)	78, 773, 794, 960
BseGI	GGATG	3 cut(s)	169, 298, 769
BseLI	CCNNNNNNNGG	2 cut(s)	190, 796
BseMI	GCAATG	1 cut(s)	222
BseMII	CTCAG	2 cut(s)	339, 495
BseRI	GAGGAG	3 cut(s)	698, 960, 963
BseXI	GCAGC	3 cut(s)	226, 328, 808
BseYI	CCCAGC	1 cut(s)	35
Bsh1236I	CGCG	1 cut(s)	519
Bsh1285I	CGRYCG	1 cut(s)	923
BsiEI	CGRYCG	1 cut(s)	923
BsiSI	CCGG	2 cut(s)	184, 671
BslI	CCNNNNNNNGG	2 cut(s)	190, 796
Bsp143I	GATC	5 cut(s)	158, 367, 420, 613, 666
Bsp19I	CCATGG	1 cut(s)	773
BspACI	CCGC	2 cut(s)	246, 519
BspCNI	CTCAG	2 cut(s)	338, 496
BspFNI	CGCG	1 cut(s)	519
BspHI	TCATGA	1 cut(s)	60
BspLI	GGNNCC	2 cut(s)	615, 779
BspMI	ACCTGC	1 cut(s)	798
BspOI	GCTAGC	1 cut(s)	1062
BspPI	GGATC	3 cut(s)	608, 621, 661
BsrDI	GCAATG	1 cut(s)	222
BssECI	CCNNGG	4 cut(s)	78, 773, 794, 960
BssMI	GATC	5 cut(s)	158, 367, 420, 613, 666
BssSI	CACGAG	1 cut(s)	909
BssT1I	CCWWGG	3 cut(s)	78, 773, 794
Bst2BI	CACGAG	1 cut(s)	909
Bst4CI	ACNGT	3 cut(s)	453, 478, 1042
Bst6I	CTCTTC	2 cut(s)	864, 885
BstAPI	GCANNNNNTGC	2 cut(s)	463, 497
BstC8I	GCNNGC	3 cut(s)	244, 1056, 1060
BstDEI	CTNAG	4 cut(s)	117, 325, 391, 504
BstDSI	CCRYGG	1 cut(s)	773
BstF5I	GGATG	3 cut(s)	169, 298, 769
BstFNI	CGCG	1 cut(s)	519
BstH2I	RGCGCY	1 cut(s)	276
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	5 cut(s)	161, 370, 423, 616, 669
BstMBI	GATC	5 cut(s)	158, 367, 420, 613, 666
BstMCI	CGRYCG	1 cut(s)	923
BstMWI	GCNNNNNNNGC	4 cut(s)	259, 463, 497, 821
BstNSI	RCATGY	1 cut(s)	1058
BstSCI	CCNGG	1 cut(s)	669
BstUI	CGCG	1 cut(s)	519
BstV1I	GCAGC	3 cut(s)	226, 328, 808
BstV2I	GAAGAC	2 cut(s)	609, 1020
BstX2I	RGATCY	4 cut(s)	367, 420, 613, 666
BstXI	CCANNNNNNTGG	1 cut(s)	229
BstYI	RGATCY	4 cut(s)	367, 420, 613, 666
Bsu36I	CCTNAGG	1 cut(s)	504
BtgI	CCRYGG	1 cut(s)	773
BtgZI	GCGATG	1 cut(s)	202
BtsCI	GGATG	3 cut(s)	169, 298, 769
BtsIMutI	CAGTG	2 cut(s)	292, 449
BveI	ACCTGC	1 cut(s)	798
Cac8I	GCNNGC	3 cut(s)	244, 1056, 1060
CciI	TCATGA	1 cut(s)	60
CfoI	GCGC	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	113
CseI	GACGC	1 cut(s)	853
Csp6I	GTAC	3 cut(s)	10, 100, 661
CviAII	CATG	6 cut(s)	61, 344, 577, 774, 1055, 1063
CviQI	GTAC	3 cut(s)	10, 100, 661
DdeI	CTNAG	4 cut(s)	117, 325, 391, 504
DpnI	GATC	5 cut(s)	160, 369, 422, 615, 668
DpnII	GATC	5 cut(s)	158, 367, 420, 613, 666
Eam1104I	CTCTTC	2 cut(s)	864, 885
EarI	CTCTTC	2 cut(s)	864, 885
Eco130I	CCWWGG	3 cut(s)	78, 773, 794
Eco47I	GGWCC	1 cut(s)	113
Eco47III	AGCGCT	1 cut(s)	274
Eco57I	CTGAAG	3 cut(s)	392, 437, 814
Eco81I	CCTNAGG	1 cut(s)	504
EcoT14I	CCWWGG	3 cut(s)	78, 773, 794
ErhI	CCWWGG	3 cut(s)	78, 773, 794
FaeI	CATG	6 cut(s)	64, 347, 580, 777, 1058, 1066
FatI	CATG	6 cut(s)	60, 343, 576, 773, 1054, 1062
Fnu4HI	GCNGC	3 cut(s)	240, 317, 822
FokI	GGATG	3 cut(s)	156, 305, 756
Fsp4HI	GCNGC	3 cut(s)	240, 317, 822
FspBI	CTAG	1 cut(s)	1059
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	3 cut(s)	240, 317, 822
GsaI	CCCAGC	1 cut(s)	39
GsuI	CTGGAG	2 cut(s)	471, 888
HaeII	RGCGCY	1 cut(s)	276
HapII	CCGG	2 cut(s)	184, 671
HgaI	GACGC	1 cut(s)	853
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	6 cut(s)	64, 347, 580, 777, 1058, 1066
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	5 cut(s)	66, 282, 330, 565, 1077
HpaII	CCGG	2 cut(s)	184, 671
HphI	GGTGA	4 cut(s)	260, 718, 767, 1054
Hpy166II	GTNNAC	1 cut(s)	113
Hpy188I	TCNGA	2 cut(s)	372, 1076
Hpy188III	TCNNGA	4 cut(s)	61, 327, 763, 832
Hpy8I	GTNNAC	1 cut(s)	113
Hpy99I	CGWCG	1 cut(s)	869
HpyCH4III	ACNGT	3 cut(s)	453, 478, 1042
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	7 cut(s)	352, 457, 500, 699, 824, 980, 1054
HpyF10VI	GCNNNNNNNGC	4 cut(s)	259, 463, 497, 821
HpyF3I	CTNAG	4 cut(s)	117, 325, 391, 504
HpySE526I	ACGT	1 cut(s)	132
Hsp92II	CATG	6 cut(s)	64, 347, 580, 777, 1058, 1066
HspAI	GCGC	1 cut(s)	273
Kzo9I	GATC	5 cut(s)	158, 367, 420, 613, 666
LmnI	GCTCC	3 cut(s)	412, 587, 929
Lsp1109I	GCAGC	3 cut(s)	226, 328, 808
LweI	GCATC	2 cut(s)	946, 967
MaeI	CTAG	1 cut(s)	1059
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	3 cut(s)	562, 724, 755
MalI	GATC	5 cut(s)	160, 369, 422, 615, 668
MboI	GATC	5 cut(s)	158, 367, 420, 613, 666
MflI	RGATCY	4 cut(s)	367, 420, 613, 666
MluCI	AATT	1 cut(s)	40
MlyI	GAGTC	4 cut(s)	75, 339, 559, 1086
MmeI	TCCRAC	1 cut(s)	460
MseI	TTAA	4 cut(s)	21, 150, 189, 1084
MslI	CAYNNNNRTG	3 cut(s)	227, 581, 937
MspI	CCGG	2 cut(s)	184, 671
MspR9I	CCNGG	1 cut(s)	671
MvnI	CGCG	1 cut(s)	519
MwoI	GCNNNNNNNGC	4 cut(s)	259, 463, 497, 821
NciI	CCSGG	1 cut(s)	671
NcoI	CCATGG	1 cut(s)	773
NdeII	GATC	5 cut(s)	158, 367, 420, 613, 666
NheI	GCTAGC	1 cut(s)	1058
NlaIII	CATG	6 cut(s)	64, 347, 580, 777, 1058, 1066
NlaIV	GGNNCC	2 cut(s)	615, 779
NmeAIII	GCCGAG	1 cut(s)	985
NmuCI	GTSAC	3 cut(s)	562, 724, 755
NspI	RCATGY	1 cut(s)	1058
PaeI	GCATGC	1 cut(s)	1058
PagI	TCATGA	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	282
PflFI	GACNNNGTC	1 cut(s)	677
PfoI	TCCNGGA	1 cut(s)	669
PkrI	GCNGC	3 cut(s)	241, 318, 823
PleI	GAGTC	4 cut(s)	74, 338, 559, 1085
PpsI	GAGTC	4 cut(s)	74, 338, 559, 1085
PspFI	CCCAGC	1 cut(s)	35
PspN4I	GGNNCC	2 cut(s)	615, 779
PspPI	GGNCC	1 cut(s)	113
PsuI	RGATCY	4 cut(s)	367, 420, 613, 666
PsyI	GACNNNGTC	1 cut(s)	677
RsaI	GTAC	3 cut(s)	11, 101, 662
RsaNI	GTAC	3 cut(s)	10, 100, 661
RseI	CAYNNNNRTG	3 cut(s)	227, 581, 937
SaqAI	TTAA	4 cut(s)	21, 150, 189, 1084
SatI	GCNGC	3 cut(s)	240, 317, 822
Sau3AI	GATC	5 cut(s)	158, 367, 420, 613, 666
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	4 cut(s)	75, 339, 559, 1086
ScrFI	CCNGG	1 cut(s)	671
SfaNI	GCATC	2 cut(s)	946, 967
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	3 cut(s)	227, 581, 937
SmlI	CTYRAG	1 cut(s)	816
SmoI	CTYRAG	1 cut(s)	816
SphI	GCATGC	1 cut(s)	1058
Sse9I	AATT	1 cut(s)	40
SsiI	CCGC	2 cut(s)	246, 519
SspI	AATATT	1 cut(s)	178
SspMI	CTAG	1 cut(s)	1059
StyD4I	CCNGG	1 cut(s)	669
StyI	CCWWGG	3 cut(s)	78, 773, 794
TaaI	ACNGT	3 cut(s)	453, 478, 1042
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	4 cut(s)	105, 734, 867, 923
TaqII	GACCGA	1 cut(s)	909
TasI	AATT	1 cut(s)	40
TatI	WGTACW	2 cut(s)	99, 660
TfiI	GAWTC	1 cut(s)	282
Tru1I	TTAA	4 cut(s)	21, 150, 189, 1084
Tru9I	TTAA	4 cut(s)	21, 150, 189, 1084
TscAI	CASTG	2 cut(s)	292, 456
TseFI	GTSAC	3 cut(s)	562, 724, 755
TseI	GCWGC	3 cut(s)	239, 316, 821
Tsp45I	GTSAC	3 cut(s)	562, 724, 755
TspDTI	ATGAA	2 cut(s)	110, 893
TspRI	CASTG	2 cut(s)	292, 456
Tth111I	GACNNNGTC	1 cut(s)	677
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	1 cut(s)	40
XceI	RCATGY	1 cut(s)	1058
XspI	CTAG	1 cut(s)	1059

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.