AT1G11545

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
3878495 .. 3880391
1897 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G11545.1

Sequence Viewer

Length: 918 bp
ATGGAGACGGAAAGGAGGATCATAACGAGCTGTTCTGCCATGACGGCTCTGTTCTTGTTCATGACGGCTCTAATGGCGTCGTCCTCTATCGCAGCAACACCGACACAATCGTTTGAAGATAATTTCAACATTATGTGGTCTGAAAATCACTTCACGACTTCCGATGATGGAGAGATCTGGAATCTTTCCTTAGATAACGACACCGGATGTGGATTTCAGACAAAGCACATGTATAGATTCGGATGGTTTAGTATGAAGCTAAAGCTCGTCGGAGGCGACTCCGCCGGCGTCGTCACCGCTTACTACATGTGTTCGGAGAATGGGGCAGGACCGGAGAGAGACGAGATAGATTTCGAATTTCTAGGGAACCGAACCGGACAGCCTTACATTATTCAGACCAATGTGTATAAGAACGGAACCGGGAATCGGGAGATGCGACATTCCCTCTGGTTCGACCCGACCAAGGATTATCACACCTACTCAATTCTTTGGAATAACCACCAGCTTGTGTTCTTCGTGGATAGGGTACCAATTCGAGTATACAAGAACAGTGATAAGGTACCAAACAACGACTTCTTCCCGAACCAGAAGCCGATGTACTTGTTCTCCAGCATTTGGAACGCTGACGATTGGGCTACACGTGGTGGTCTGGAGAAGACTGACTGGAAAAAAGCTCCATTCGTCTCTTCTTACAAGGACTTCGCCGTCGAAGGCTGCCGTTGGAAGGATCCATTCCCTGCATGCGTCTCTACCACAACAGAGAATTGGTGGGATCAGTACGACGCGTGGCATTTGTCCAAGACACAGAAGATGGATTATGCGTGGGTGCAGCGTAATCTCGTCGTATACGATTATTGCAAAGACAGTGAGAGGTTCCCTACTCTTCCTTGGGAGTGTTCCATTAGCCCTTGGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

305

Amino Acids

35.56

Weight (kDa)

5.19

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 38 - 224 7.8e-62 Glycosyl hydrolases family 16
XET_C PF06955 252 - 299 2.9e-15 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 704
Acc65I GGTACC 2 cut(s) 526, 559
AccB1I GGYRCC 2 cut(s) 526, 559
AccB7I CCANNNNNTGG 1 cut(s) 615
AccI GTMKAC 2 cut(s) 540, 846
AccII CGCG 1 cut(s) 785
AciI CCGC 2 cut(s) 282, 297
AclWI GGATC 4 cut(s) 26, 722, 735, 780
AcsI RAATTY 1 cut(s) 356
AcvI CACGTG 1 cut(s) 641
AcyI GRCGYC 2 cut(s) 77, 288
AdeI CACNNNGTG 1 cut(s) 644
AfaI GTAC 4 cut(s) 528, 561, 599, 779
AfiI CCNNNNNNNGG 4 cut(s) 426, 463, 615, 724
AflIII ACRYGT 4 cut(s) 228, 306, 638, 783
AgsI TTSAA 2 cut(s) 116, 127
AluBI AGCT 5 cut(s) 30, 259, 265, 505, 674
AluI AGCT 5 cut(s) 30, 259, 265, 505, 674
Alw26I GTCTC 3 cut(s) 333, 688, 751
AlwI GGATC 4 cut(s) 26, 722, 735, 780
ApeKI GCWGC 3 cut(s) 92, 714, 829
ApoI RAATTY 1 cut(s) 356
Asp718I GGTACC 2 cut(s) 526, 559
AspS9I GGNCC 1 cut(s) 329
AsuC2I CCSGG 1 cut(s) 421
AsuHPI GGTGA 1 cut(s) 286
AsuII TTCGAA 1 cut(s) 354
AvaII GGWCC 1 cut(s) 329
BamHI GGATCC 1 cut(s) 727
BanI GGYRCC 2 cut(s) 526, 559
BarI GAAGNNNNNNTAC 2 cut(s) 581, 613
BbrPI CACGTG 1 cut(s) 641
BbsI GAAGAC 1 cut(s) 662
BbvI GCAGC 3 cut(s) 104, 701, 841
BccI CCATC 3 cut(s) 161, 237, 805
BceAI ACGGC 4 cut(s) 60, 81, 689, 702
BcnI CCSGG 1 cut(s) 421
BcoDI GTCTC 3 cut(s) 333, 688, 751
BfaI CTAG 1 cut(s) 362
BglI GCCNNNNNGGC 1 cut(s) 44
BglII AGATCT 1 cut(s) 174
BisI GCNGC 3 cut(s) 93, 715, 830
BlsI GCNGC 3 cut(s) 94, 716, 831
Bme1390I CCNGG 1 cut(s) 421
Bme18I GGWCC 1 cut(s) 329
BmgT120I GGNCC 1 cut(s) 329
BmiI GGNNCC 6 cut(s) 368, 418, 528, 561, 729, 875
BmrFI CCNGG 1 cut(s) 421
BmsI GCATC 1 cut(s) 423
BpiI GAAGAC 1 cut(s) 662
BpmI CTGGAG 2 cut(s) 592, 671
Bpu14I TTCGAA 1 cut(s) 354
BpuMI CCSGG 1 cut(s) 421
BsaAI YACGTR 1 cut(s) 641
BsaHI GRCGYC 2 cut(s) 77, 288
BsaJI CCNNGG 3 cut(s) 462, 887, 908
BsaWI WCCGGW 3 cut(s) 203, 331, 374
BsaXI ACNNNNNCTCC 2 cut(s) 590, 620
Bsc4I CCNNNNNNNGG 4 cut(s) 426, 463, 615, 724
Bse118I RCCGGY 1 cut(s) 284
Bse1I ACTGG 1 cut(s) 668
BseDI CCNNGG 3 cut(s) 462, 887, 908
BseGI GGATG 2 cut(s) 212, 248
BseLI CCNNNNNNNGG 4 cut(s) 426, 463, 615, 724
BseNI ACTGG 1 cut(s) 668
BseXI GCAGC 3 cut(s) 104, 701, 841
BsgI GTGCAG 1 cut(s) 848
Bsh1236I CGCG 1 cut(s) 785
BshNI GGYRCC 2 cut(s) 526, 559
BsiSI CCGG 5 cut(s) 204, 285, 332, 375, 420
BslI CCNNNNNNNGG 4 cut(s) 426, 463, 615, 724
BsmAI GTCTC 3 cut(s) 333, 688, 751
BsmBI CGTCTC 3 cut(s) 333, 688, 751
Bsp119I TTCGAA 1 cut(s) 354
Bsp143I GATC 4 cut(s) 18, 174, 727, 772
BspACI CCGC 2 cut(s) 282, 297
BspFNI CGCG 1 cut(s) 785
BspHI TCATGA 1 cut(s) 60
BspLI GGNNCC 6 cut(s) 368, 418, 528, 561, 729, 875
BspPI GGATC 4 cut(s) 26, 722, 735, 780
BspT104I TTCGAA 1 cut(s) 354
BspT107I GGYRCC 2 cut(s) 526, 559
BsrFI RCCGGY 1 cut(s) 284
BsrI ACTGG 1 cut(s) 668
BssAI RCCGGY 1 cut(s) 284
BssECI CCNNGG 3 cut(s) 462, 887, 908
BssMI GATC 4 cut(s) 18, 174, 727, 772
BssNAI GTATAC 2 cut(s) 541, 847
BssNI GRCGYC 2 cut(s) 77, 288
BssT1I CCWWGG 3 cut(s) 462, 887, 908
Bst1107I GTATAC 2 cut(s) 541, 847
Bst4CI ACNGT 2 cut(s) 551, 866
Bst6I CTCTTC 2 cut(s) 691, 888
BstACI GRCGYC 2 cut(s) 77, 288
BstBAI YACGTR 1 cut(s) 641
BstBI TTCGAA 1 cut(s) 354
BstC8I GCNNGC 2 cut(s) 286, 742
BstDEI CTNAG 1 cut(s) 190
BstF5I GGATG 2 cut(s) 212, 248
BstFNI CGCG 1 cut(s) 785
BstKTI GATC 4 cut(s) 21, 177, 730, 775
BstMAI GTCTC 3 cut(s) 333, 688, 751
BstMBI GATC 4 cut(s) 18, 174, 727, 772
BstMWI GCNNNNNNNGC 2 cut(s) 44, 74
BstNSI RCATGY 3 cut(s) 232, 310, 744
BstSCI CCNGG 1 cut(s) 419
BstUI CGCG 1 cut(s) 785
BstV1I GCAGC 3 cut(s) 104, 701, 841
BstV2I GAAGAC 1 cut(s) 662
BstX2I RGATCY 2 cut(s) 174, 727
BstYI RGATCY 2 cut(s) 174, 727
BstZ17I GTATAC 2 cut(s) 541, 847
BtsCI GGATG 2 cut(s) 212, 248
BtsIMutI CAGTG 2 cut(s) 556, 871
Cac8I GCNNGC 2 cut(s) 286, 742
CciI TCATGA 1 cut(s) 60
Cfr10I RCCGGY 1 cut(s) 284
Cfr13I GGNCC 1 cut(s) 329
CseI GACGC 4 cut(s) 66, 277, 733, 791
Csp6I GTAC 4 cut(s) 527, 560, 598, 778
CviAII CATG 5 cut(s) 40, 61, 229, 307, 741
CviQI GTAC 4 cut(s) 527, 560, 598, 778
DdeI CTNAG 1 cut(s) 190
DpnI GATC 4 cut(s) 20, 176, 729, 774
DpnII GATC 4 cut(s) 18, 174, 727, 772
DraIII CACNNNGTG 1 cut(s) 644
DrdI GACNNNNNNGTC 1 cut(s) 704
DseDI GACNNNNNNGTC 1 cut(s) 704
Eam1104I CTCTTC 2 cut(s) 691, 888
EarI CTCTTC 2 cut(s) 691, 888
EciI GGCGGA 1 cut(s) 271
Eco130I CCWWGG 3 cut(s) 462, 887, 908
Eco47I GGWCC 1 cut(s) 329
Eco72I CACGTG 1 cut(s) 641
EcoT14I CCWWGG 3 cut(s) 462, 887, 908
ErhI CCWWGG 3 cut(s) 462, 887, 908
Esp3I CGTCTC 3 cut(s) 333, 688, 751
FaeI CATG 5 cut(s) 43, 64, 232, 310, 744
FatI CATG 5 cut(s) 39, 60, 228, 306, 740
FblI GTMKAC 2 cut(s) 540, 846
Fnu4HI GCNGC 3 cut(s) 93, 715, 830
FokI GGATG 2 cut(s) 219, 255
Fsp4HI GCNGC 3 cut(s) 93, 715, 830
FspBI CTAG 1 cut(s) 362
GluI GCNGC 3 cut(s) 93, 715, 830
GsuI CTGGAG 2 cut(s) 592, 671
HapII CCGG 5 cut(s) 204, 285, 332, 375, 420
HgaI GACGC 4 cut(s) 66, 277, 733, 791
Hin1I GRCGYC 2 cut(s) 77, 288
Hin1II CATG 5 cut(s) 43, 64, 232, 310, 744
HinfI GANTC 4 cut(s) 181, 237, 278, 424
HpaII CCGG 5 cut(s) 204, 285, 332, 375, 420
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 2 cut(s) 541, 847
Hpy188I TCNGA 7 cut(s) 142, 163, 219, 242, 272, 316, 396
Hpy188III TCNNGA 6 cut(s) 61, 154, 178, 428, 580, 650
Hpy8I GTNNAC 2 cut(s) 541, 847
Hpy99I CGWCG 6 cut(s) 82, 272, 293, 710, 785, 845
HpyAV CCTTC 2 cut(s) 704, 718
HpyCH4III ACNGT 2 cut(s) 551, 866
HpyCH4IV ACGT 1 cut(s) 640
HpyCH4V TGCA 3 cut(s) 740, 829, 858
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 74
HpyF3I CTNAG 1 cut(s) 190
HpySE526I ACGT 1 cut(s) 640
Hsp92I GRCGYC 2 cut(s) 77, 288
Hsp92II CATG 5 cut(s) 43, 64, 232, 310, 744
KpnI GGTACC 2 cut(s) 530, 563
KroI GCCGGC 1 cut(s) 284
KroNI GCCGGC 1 cut(s) 286
Kzo9I GATC 4 cut(s) 18, 174, 727, 772
LmnI GCTCC 1 cut(s) 679
Lsp1109I GCAGC 3 cut(s) 104, 701, 841
LweI GCATC 1 cut(s) 423
MaeI CTAG 1 cut(s) 362
MaeII ACGT 1 cut(s) 640
MaeIII GTNAC 1 cut(s) 292
MalI GATC 4 cut(s) 20, 176, 729, 774
MboI GATC 4 cut(s) 18, 174, 727, 772
MboII GAAGA 7 cut(s) 128, 505, 568, 667, 678, 820, 875
MflI RGATCY 2 cut(s) 174, 727
MluCI AATT 5 cut(s) 121, 356, 483, 531, 763
MluI ACGCGT 1 cut(s) 783
MlyI GAGTC 1 cut(s) 272
MmeI TCCRAC 2 cut(s) 250, 701
MnlI CCTC 5 cut(s) 9, 94, 266, 455, 864
MreI CGCCGGCG 1 cut(s) 284
MroNI GCCGGC 1 cut(s) 284
MseI TTAA 1 cut(s) 916
MspI CCGG 5 cut(s) 204, 285, 332, 375, 420
MspR9I CCNGG 1 cut(s) 421
MvnI CGCG 1 cut(s) 785
MwoI GCNNNNNNNGC 2 cut(s) 44, 74
NaeI GCCGGC 1 cut(s) 286
NciI CCSGG 1 cut(s) 421
NdeII GATC 4 cut(s) 18, 174, 727, 772
NgoMIV GCCGGC 1 cut(s) 284
NlaIII CATG 5 cut(s) 43, 64, 232, 310, 744
NlaIV GGNNCC 6 cut(s) 368, 418, 528, 561, 729, 875
NmuCI GTSAC 1 cut(s) 292
NspI RCATGY 3 cut(s) 232, 310, 744
NspV TTCGAA 1 cut(s) 354
PaeI GCATGC 1 cut(s) 744
PagI TCATGA 1 cut(s) 60
PciI ACATGT 2 cut(s) 228, 306
PcsI WCGNNNNNNNCGW 3 cut(s) 273, 433, 846
PdiI GCCGGC 1 cut(s) 286
PfeI GAWTC 3 cut(s) 181, 237, 424
PflMI CCANNNNNTGG 1 cut(s) 615
PkrI GCNGC 3 cut(s) 94, 716, 831
PleI GAGTC 1 cut(s) 272
PmaCI CACGTG 1 cut(s) 641
PmlI CACGTG 1 cut(s) 641
PpsI GAGTC 1 cut(s) 272
Ppu21I YACGTR 1 cut(s) 641
PscI ACATGT 2 cut(s) 228, 306
PspCI CACGTG 1 cut(s) 641
PspN4I GGNNCC 6 cut(s) 368, 418, 528, 561, 729, 875
PspPI GGNCC 1 cut(s) 329
PsuI RGATCY 2 cut(s) 174, 727
RsaI GTAC 4 cut(s) 528, 561, 599, 779
RsaNI GTAC 4 cut(s) 527, 560, 598, 778
SaqAI TTAA 1 cut(s) 916
SatI GCNGC 3 cut(s) 93, 715, 830
Sau3AI GATC 4 cut(s) 18, 174, 727, 772
Sau96I GGNCC 1 cut(s) 329
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 1 cut(s) 421
SetI ASST 9 cut(s) 32, 261, 267, 479, 507, 561, 643, 676, 875
SfaNI GCATC 1 cut(s) 423
SfuI TTCGAA 1 cut(s) 354
SgrAI CRCCGGYG 1 cut(s) 284
SinI GGWCC 1 cut(s) 329
SphI GCATGC 1 cut(s) 744
Sse9I AATT 5 cut(s) 121, 356, 483, 531, 763
SsiI CCGC 2 cut(s) 282, 297
SspMI CTAG 1 cut(s) 362
StyD4I CCNGG 1 cut(s) 419
StyI CCWWGG 3 cut(s) 462, 887, 908
TaaI ACNGT 2 cut(s) 551, 866
TaiI ACGT 1 cut(s) 643
TaqI TCGA 4 cut(s) 354, 453, 535, 708
TasI AATT 5 cut(s) 121, 356, 483, 531, 763
TatI WGTACW 1 cut(s) 597
TfiI GAWTC 3 cut(s) 181, 237, 424
Tru1I TTAA 1 cut(s) 916
Tru9I TTAA 1 cut(s) 916
TscAI CASTG 2 cut(s) 556, 871
TseFI GTSAC 1 cut(s) 292
TseI GCWGC 3 cut(s) 92, 714, 829
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 2 cut(s) 49, 269
TspGWI ACGGA 2 cut(s) 23, 429
TspRI CASTG 2 cut(s) 556, 871
Van91I CCANNNNNTGG 1 cut(s) 615
VpaK11BI GGWCC 1 cut(s) 329
XapI RAATTY 1 cut(s) 356
XceI RCATGY 3 cut(s) 232, 310, 744
XmiI GTMKAC 2 cut(s) 540, 846
XspI CTAG 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.