RchiOBHm_Chr5g0003921

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
2451049 .. 2452998
1950 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28520

Sequence Viewer

Length: 909 bp
ATGGAAAGAAGGGCATCTTCTCCAATGGCTGCTATTCTTGTTTACATTGCAGTTTCCATGGCTGCTGCTTATTGTTCTTCATCTGTATCAGCTGCACCATCAACTTCTTTCGAAGACAATTTCAACATAATGTGGTCCGAGGACCATTTCAAAACCTCTGCAGATGGGGAGATCTGGTACCTCTCGCTCGACAATAATACAGGTTGCGGGTTTCAAACGAAACAGATGTACAGATTTGGTTGGTTCAGCATGAAGCTCAAGCTGGTTGGAGGTGACTCTGCTGGTGTAGTGACAGCTTACTATATGTGTACTGAAAATGGAGCAGGGCCAACCAGAGATGAGCTAGATTTTGAGTTCTTGGGGAATAGGAGTGGGCAGCCTTATCTGATTCAGACAAATGTTTACAAGAATGGAACTGGGAACCGTGAGATGAGGCACAGCCTTTGGTTTGACCCCACTGAGGATTATCATACCTATTCAATTCTTTGGAACAATCATCAGATTGTTTTTTTTGTTGACAAAGTTCCCATAAGGGTGTTTAAGAACAATGGTGAAGCAAACGACTTCTTCCCCAACGAGAAACCCATGTATTTATTCTCGAGCATATGGAATGCCGATGAATGGGCGACGAGAGGTGGACTTGAGAAGACAGACTGGAAAAAATCACCATTTGTGTCTTCCTACAAGGACTTCAGTGTTGATGCATGCCAGTGGGAAGATCCATACCCTAAATGTGTGTCCACAACAACAGAGAACTGGTGGGATCAGTATGATGCTTGGCACCTTTCAGATTCTCAGAAAATGGACTATGCTTGGATACAAAGAAACCTTGTTGTTTATGATTATTGCAAGGACACTGAGCGGTTCCCAACATTGCCAGTGGAGTGTCCATTGAGTCCATGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

302

Amino Acids

34.99

Weight (kDa)

4.8

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 37 - 221 1.6e-60 Glycosyl hydrolases family 16
XET_C PF06955 249 - 296 1.2e-15 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 177
AccB1I GGYRCC 2 cut(s) 177, 780
AccBSI CCGCTC 1 cut(s) 862
AciI CCGC 2 cut(s) 207, 862
AclWI GGATC 2 cut(s) 713, 771
AcuI CTGAAG 1 cut(s) 676
AfaI GTAC 3 cut(s) 179, 230, 310
AfiI CCNNNNNNNGG 2 cut(s) 460, 621
AgsI TTSAA 4 cut(s) 124, 151, 215, 480
AluBI AGCT 5 cut(s) 92, 256, 262, 296, 343
AluI AGCT 5 cut(s) 92, 256, 262, 296, 343
AlwI GGATC 2 cut(s) 713, 771
Ama87I CYCGRG 1 cut(s) 598
AoxI GGCC 1 cut(s) 326
ApeKI GCWGC 5 cut(s) 29, 62, 65, 92, 376
Asp718I GGTACC 1 cut(s) 177
AspS9I GGNCC 3 cut(s) 135, 142, 326
AsuHPI GGTGA 3 cut(s) 284, 563, 657
AsuII TTCGAA 1 cut(s) 111
AvaI CYCGRG 1 cut(s) 598
AvaII GGWCC 2 cut(s) 135, 142
BanI GGYRCC 2 cut(s) 177, 780
BbsI GAAGAC 3 cut(s) 120, 653, 669
BbvI GCAGC 5 cut(s) 16, 49, 52, 79, 388
BccI CCATC 2 cut(s) 106, 158
BciVI GTATCC 1 cut(s) 810
BfaI CTAG 1 cut(s) 344
BfmI CTRYAG 1 cut(s) 159
BfuI GTATCC 1 cut(s) 810
BglII AGATCT 1 cut(s) 171
BisI GCNGC 5 cut(s) 30, 63, 66, 93, 377
BlsI GCNGC 5 cut(s) 31, 64, 67, 94, 378
Bme18I GGWCC 2 cut(s) 135, 142
BmeT110I CYCGRG 1 cut(s) 598
BmgT120I GGNCC 3 cut(s) 135, 142, 326
BmiI GGNNCC 4 cut(s) 179, 422, 782, 866
BmrI ACTGGG 1 cut(s) 426
BmsI GCATC 3 cut(s) 23, 691, 763
BmuI ACTGGG 1 cut(s) 426
BpiI GAAGAC 3 cut(s) 120, 653, 669
Bpu14I TTCGAA 1 cut(s) 111
BpuEI CTTGAG 2 cut(s) 242, 662
BsaJI CCNNGG 3 cut(s) 57, 138, 899
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
Bsc4I CCNNNNNNNGG 2 cut(s) 460, 621
Bse1I ACTGG 5 cut(s) 421, 659, 709, 761, 878
Bse3DI GCAATG 2 cut(s) 45, 872
BseDI CCNNGG 3 cut(s) 57, 138, 899
BseLI CCNNNNNNNGG 2 cut(s) 460, 621
BseMI GCAATG 2 cut(s) 45, 872
BseMII CTCAG 3 cut(s) 450, 809, 849
BseNI ACTGG 5 cut(s) 421, 659, 709, 761, 878
BseXI GCAGC 5 cut(s) 16, 49, 52, 79, 388
BsgI GTGCAG 1 cut(s) 78
BshFI GGCC 1 cut(s) 328
BshNI GGYRCC 2 cut(s) 177, 780
BsiHKCI CYCGRG 1 cut(s) 598
BslI CCNNNNNNNGG 2 cut(s) 460, 621
BsmI GAATGC 1 cut(s) 616
BsnI GGCC 1 cut(s) 328
BsoBI CYCGRG 1 cut(s) 598
Bsp119I TTCGAA 1 cut(s) 111
Bsp1407I TGTACA 1 cut(s) 228
Bsp143I GATC 3 cut(s) 171, 718, 763
Bsp19I CCATGG 2 cut(s) 57, 899
BspACI CCGC 2 cut(s) 207, 862
BspANI GGCC 1 cut(s) 328
BspCNI CTCAG 3 cut(s) 451, 808, 850
BspLI GGNNCC 4 cut(s) 179, 422, 782, 866
BspMAI CTGCAG 1 cut(s) 163
BspPI GGATC 2 cut(s) 713, 771
BspT104I TTCGAA 1 cut(s) 111
BspT107I GGYRCC 2 cut(s) 177, 780
BsrBI CCGCTC 1 cut(s) 862
BsrDI GCAATG 2 cut(s) 45, 872
BsrGI TGTACA 1 cut(s) 228
BsrI ACTGG 5 cut(s) 421, 659, 709, 761, 878
BssECI CCNNGG 3 cut(s) 57, 138, 899
BssMI GATC 3 cut(s) 171, 718, 763
BssT1I CCWWGG 2 cut(s) 57, 899
Bst4CI ACNGT 1 cut(s) 425
BstAUI TGTACA 1 cut(s) 228
BstBI TTCGAA 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 706
BstDEI CTNAG 3 cut(s) 459, 795, 858
BstDSI CCRYGG 2 cut(s) 57, 899
BstKTI GATC 3 cut(s) 174, 721, 766
BstMBI GATC 3 cut(s) 171, 718, 763
BstNSI RCATGY 1 cut(s) 708
BstSFI CTRYAG 1 cut(s) 159
BstV1I GCAGC 5 cut(s) 16, 49, 52, 79, 388
BstV2I GAAGAC 3 cut(s) 120, 653, 669
BstX2I RGATCY 2 cut(s) 171, 718
BstYI RGATCY 2 cut(s) 171, 718
BsuI GTATCC 1 cut(s) 810
BsuRI GGCC 1 cut(s) 328
BtgI CCRYGG 2 cut(s) 57, 899
BtsIMutI CAGTG 5 cut(s) 456, 700, 716, 855, 885
Cac8I GCNNGC 1 cut(s) 706
Cfr13I GGNCC 3 cut(s) 135, 142, 326
Csp6I GTAC 3 cut(s) 178, 229, 309
CviAII CATG 5 cut(s) 58, 250, 586, 705, 900
CviQI GTAC 3 cut(s) 178, 229, 309
DdeI CTNAG 3 cut(s) 459, 795, 858
DpnI GATC 3 cut(s) 173, 720, 765
DpnII GATC 3 cut(s) 171, 718, 763
Eco130I CCWWGG 2 cut(s) 57, 899
Eco47I GGWCC 2 cut(s) 135, 142
Eco57I CTGAAG 1 cut(s) 676
Eco88I CYCGRG 1 cut(s) 598
EcoT14I CCWWGG 2 cut(s) 57, 899
EcoT22I ATGCAT 1 cut(s) 706
ErhI CCWWGG 2 cut(s) 57, 899
FaeI CATG 5 cut(s) 61, 253, 589, 708, 903
FalI AAGNNNNNCTT 1 cut(s) 33
FatI CATG 5 cut(s) 57, 249, 585, 704, 899
FauI CCCGC 1 cut(s) 200
FauNDI CATATG 1 cut(s) 605
Fnu4HI GCNGC 5 cut(s) 30, 63, 66, 93, 377
Fsp4HI GCNGC 5 cut(s) 30, 63, 66, 93, 377
FspBI CTAG 1 cut(s) 344
GluI GCNGC 5 cut(s) 30, 63, 66, 93, 377
HaeIII GGCC 1 cut(s) 328
Hin1II CATG 5 cut(s) 61, 253, 589, 708, 903
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HinfI GANTC 4 cut(s) 275, 388, 791, 895
HphI GGTGA 3 cut(s) 284, 563, 657
Hpy166II GTNNAC 6 cut(s) 43, 309, 403, 517, 638, 741
Hpy188I TCNGA 6 cut(s) 139, 387, 393, 501, 790, 798
Hpy188III TCNNGA 1 cut(s) 598
Hpy8I GTNNAC 6 cut(s) 43, 309, 403, 517, 638, 741
Hpy99I CGWCG 1 cut(s) 631
HpyAV CCTTC 1 cut(s) 3
HpyCH4III ACNGT 1 cut(s) 425
HpyCH4V TGCA 5 cut(s) 50, 95, 161, 704, 849
HpyF3I CTNAG 3 cut(s) 459, 795, 858
Hsp92II CATG 5 cut(s) 61, 253, 589, 708, 903
KpnI GGTACC 1 cut(s) 181
Kzo9I GATC 3 cut(s) 171, 718, 763
LmnI GCTCC 1 cut(s) 320
Lsp1109I GCAGC 5 cut(s) 16, 49, 52, 79, 388
LweI GCATC 3 cut(s) 23, 691, 763
MaeI CTAG 1 cut(s) 344
MaeIII GTNAC 2 cut(s) 272, 289
MalI GATC 3 cut(s) 173, 720, 765
MbiI CCGCTC 1 cut(s) 862
MboI GATC 3 cut(s) 171, 718, 763
MboII GAAGA 7 cut(s) 9, 69, 125, 559, 658, 669, 728
MflI RGATCY 2 cut(s) 171, 718
MluCI AATT 2 cut(s) 118, 480
MlyI GAGTC 2 cut(s) 269, 904
MmeI TCCRAC 1 cut(s) 247
MnlI CCTC 7 cut(s) 133, 166, 191, 263, 426, 454, 626
Mph1103I ATGCAT 1 cut(s) 706
MseI TTAA 1 cut(s) 540
MslI CAYNNNNRTG 3 cut(s) 533, 709, 904
MspA1I CMGCKG 1 cut(s) 92
Mva1269I GAATGC 1 cut(s) 616
NcoI CCATGG 2 cut(s) 57, 899
NdeI CATATG 1 cut(s) 605
NdeII GATC 3 cut(s) 171, 718, 763
NlaIII CATG 5 cut(s) 61, 253, 589, 708, 903
NlaIV GGNNCC 4 cut(s) 179, 422, 782, 866
NmuCI GTSAC 2 cut(s) 272, 289
NsiI ATGCAT 1 cut(s) 706
NspI RCATGY 1 cut(s) 708
NspV TTCGAA 1 cut(s) 111
PaeI GCATGC 1 cut(s) 708
PaeR7I CTCGAG 1 cut(s) 598
PctI GAATGC 1 cut(s) 616
PfeI GAWTC 2 cut(s) 388, 791
PkrI GCNGC 5 cut(s) 31, 64, 67, 94, 378
PleI GAGTC 2 cut(s) 269, 903
PpsI GAGTC 2 cut(s) 269, 903
PspN4I GGNNCC 4 cut(s) 179, 422, 782, 866
PspPI GGNCC 3 cut(s) 135, 142, 326
PstI CTGCAG 1 cut(s) 163
PsuI RGATCY 2 cut(s) 171, 718
PvuII CAGCTG 1 cut(s) 92
RsaI GTAC 3 cut(s) 179, 230, 310
RsaNI GTAC 3 cut(s) 178, 229, 309
RseI CAYNNNNRTG 3 cut(s) 533, 709, 904
SaqAI TTAA 1 cut(s) 540
SatI GCNGC 5 cut(s) 30, 63, 66, 93, 377
Sau3AI GATC 3 cut(s) 171, 718, 763
Sau96I GGNCC 3 cut(s) 135, 142, 326
SchI GAGTC 2 cut(s) 269, 904
SfaNI GCATC 3 cut(s) 23, 691, 763
SfcI CTRYAG 1 cut(s) 159
Sfr274I CTCGAG 1 cut(s) 598
SfuI TTCGAA 1 cut(s) 111
SinI GGWCC 2 cut(s) 135, 142
SlaI CTCGAG 1 cut(s) 598
SmiMI CAYNNNNRTG 3 cut(s) 533, 709, 904
SmlI CTYRAG 3 cut(s) 257, 598, 641
SmoI CTYRAG 3 cut(s) 257, 598, 641
SphI GCATGC 1 cut(s) 708
Sse9I AATT 2 cut(s) 118, 480
SsiI CCGC 2 cut(s) 207, 862
SspMI CTAG 1 cut(s) 344
StyI CCWWGG 2 cut(s) 57, 899
TaaI ACNGT 1 cut(s) 425
TaqI TCGA 3 cut(s) 111, 189, 599
TasI AATT 2 cut(s) 118, 480
TatI WGTACW 2 cut(s) 228, 308
TfiI GAWTC 2 cut(s) 388, 791
Tru1I TTAA 1 cut(s) 540
Tru9I TTAA 1 cut(s) 540
TscAI CASTG 5 cut(s) 463, 700, 716, 862, 885
TseFI GTSAC 2 cut(s) 272, 289
TseI GCWGC 5 cut(s) 29, 62, 65, 92, 376
Tsp45I GTSAC 2 cut(s) 272, 289
TspDTI ATGAA 3 cut(s) 69, 266, 633
TspRI CASTG 5 cut(s) 463, 700, 716, 862, 885
VpaK11BI GGWCC 2 cut(s) 135, 142
XceI RCATGY 1 cut(s) 708
XcmI CCANNNNNNNNNTGG 1 cut(s) 897
XhoI CTCGAG 1 cut(s) 598
XspI CTAG 1 cut(s) 344
Zsp2I ATGCAT 1 cut(s) 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.