Rh5DG034200

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
2389852 .. 2392027
2176 bp
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UTR
Exon/CDS
Intron
Rh5DG034200.1

Sequence Viewer

Length: 606 bp
ATGTGTACTGAAAATGGAGCAGGGCCAACCAGAGATGAGCTAGATTTTGAGTTCTTGGGGAATAGGAGTGGGCAGCCTTATCTGATTCAGACAAATGTTTACAAGAATGGAACTGGGAACCGTGAGATGAGGCACAGCCTTTGGTTTGACCCCACTGAGGATTATCATACCTATTCAATTCTTTGGAACAATCATCAGATTGTTTTTTTTGTTGACAAAGTTCCCATAAGGGTGTTTAAGAACAATGGTGAAGCAAACGACTTCTTCCCCAACGAGAAACCCATGTATTTGTTCTCGAGCATATGGAATGCCGATGAATGGGCGACGAGAGGTGGACTTGAGAAGACAGACTGGAAAAAATCACCATTTGTGTCTTCCTACAAGGACTTCAGTGTTGATGCATGCCAGTGGGAAGATCCATACCCTAAATGTGTGTCCACAACAACAGAGAACTGGTGGGATCAGTATGATGCTTGGCACCTTTCAGATTCTCAGAAAATGGACTATGCTTGGATACAAAGAAACCTCGTTGTTTATGATTATTGCAAGGACACTGAGAGGTTCCCAACATTGCCAGTGGAGTGTCCATTGAGTCCATGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

201

Amino Acids

23.87

Weight (kDa)

4.73

Isoelectric Point (pI)

38.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 8 - 120 1.8e-42 Glycosyl hydrolases family 16
XET_C PF06955 148 - 195 6.3e-16 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 477
AclWI GGATC 2 cut(s) 410, 468
AcuI CTGAAG 1 cut(s) 373
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 2 cut(s) 157, 318
AgsI TTSAA 1 cut(s) 177
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
AlwI GGATC 2 cut(s) 410, 468
Ama87I CYCGRG 1 cut(s) 295
AoxI GGCC 1 cut(s) 23
ApeKI GCWGC 1 cut(s) 73
AspS9I GGNCC 1 cut(s) 23
AsuHPI GGTGA 2 cut(s) 260, 354
AvaI CYCGRG 1 cut(s) 295
BanI GGYRCC 1 cut(s) 477
BbsI GAAGAC 2 cut(s) 350, 366
BbvI GCAGC 1 cut(s) 85
BciVI GTATCC 1 cut(s) 507
BfaI CTAG 1 cut(s) 41
BfuI GTATCC 1 cut(s) 507
BisI GCNGC 1 cut(s) 74
BlsI GCNGC 1 cut(s) 75
BmeT110I CYCGRG 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 3 cut(s) 119, 479, 563
BmrI ACTGGG 1 cut(s) 123
BmsI GCATC 2 cut(s) 388, 460
BmuI ACTGGG 1 cut(s) 123
BpiI GAAGAC 2 cut(s) 350, 366
BpuEI CTTGAG 1 cut(s) 359
BsaJI CCNNGG 1 cut(s) 596
Bsc4I CCNNNNNNNGG 2 cut(s) 157, 318
Bse1I ACTGG 5 cut(s) 118, 356, 406, 458, 575
Bse3DI GCAATG 1 cut(s) 569
BseDI CCNNGG 1 cut(s) 596
BseLI CCNNNNNNNGG 2 cut(s) 157, 318
BseMI GCAATG 1 cut(s) 569
BseMII CTCAG 3 cut(s) 147, 506, 546
BseNI ACTGG 5 cut(s) 118, 356, 406, 458, 575
BseXI GCAGC 1 cut(s) 85
BshFI GGCC 1 cut(s) 25
BshNI GGYRCC 1 cut(s) 477
BsiHKCI CYCGRG 1 cut(s) 295
BslI CCNNNNNNNGG 2 cut(s) 157, 318
BsmI GAATGC 1 cut(s) 313
BsnI GGCC 1 cut(s) 25
BsoBI CYCGRG 1 cut(s) 295
Bsp143I GATC 2 cut(s) 415, 460
Bsp19I CCATGG 1 cut(s) 596
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 3 cut(s) 148, 505, 547
BspLI GGNNCC 3 cut(s) 119, 479, 563
BspPI GGATC 2 cut(s) 410, 468
BspT107I GGYRCC 1 cut(s) 477
BsrDI GCAATG 1 cut(s) 569
BsrI ACTGG 5 cut(s) 118, 356, 406, 458, 575
BssECI CCNNGG 1 cut(s) 596
BssMI GATC 2 cut(s) 415, 460
BssT1I CCWWGG 1 cut(s) 596
Bst4CI ACNGT 1 cut(s) 122
BstC8I GCNNGC 1 cut(s) 403
BstDEI CTNAG 3 cut(s) 156, 492, 555
BstDSI CCRYGG 1 cut(s) 596
BstKTI GATC 2 cut(s) 418, 463
BstMBI GATC 2 cut(s) 415, 460
BstNSI RCATGY 1 cut(s) 405
BstV1I GCAGC 1 cut(s) 85
BstV2I GAAGAC 2 cut(s) 350, 366
BstX2I RGATCY 1 cut(s) 415
BstYI RGATCY 1 cut(s) 415
BsuI GTATCC 1 cut(s) 507
BsuRI GGCC 1 cut(s) 25
BtgI CCRYGG 1 cut(s) 596
BtsIMutI CAGTG 5 cut(s) 153, 397, 413, 552, 582
Cac8I GCNNGC 1 cut(s) 403
Cfr13I GGNCC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 6
CviAII CATG 3 cut(s) 283, 402, 597
CviJI RGCY 4 cut(s) 25, 40, 76, 138
CviKI_1 RGCY 4 cut(s) 25, 40, 76, 138
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 3 cut(s) 156, 492, 555
DpnI GATC 2 cut(s) 417, 462
DpnII GATC 2 cut(s) 415, 460
Eco130I CCWWGG 1 cut(s) 596
Eco57I CTGAAG 1 cut(s) 373
Eco88I CYCGRG 1 cut(s) 295
EcoT14I CCWWGG 1 cut(s) 596
EcoT22I ATGCAT 1 cut(s) 403
ErhI CCWWGG 1 cut(s) 596
FaeI CATG 3 cut(s) 286, 405, 600
FatI CATG 3 cut(s) 282, 401, 596
FauNDI CATATG 1 cut(s) 302
Fnu4HI GCNGC 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 74
FspBI CTAG 1 cut(s) 41
GluI GCNGC 1 cut(s) 74
HaeIII GGCC 1 cut(s) 25
Hin1II CATG 3 cut(s) 286, 405, 600
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HinfI GANTC 3 cut(s) 85, 488, 592
HphI GGTGA 2 cut(s) 260, 354
Hpy166II GTNNAC 5 cut(s) 6, 100, 214, 335, 438
Hpy188I TCNGA 5 cut(s) 84, 90, 198, 487, 495
Hpy188III TCNNGA 1 cut(s) 295
Hpy8I GTNNAC 5 cut(s) 6, 100, 214, 335, 438
Hpy99I CGWCG 1 cut(s) 328
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4V TGCA 2 cut(s) 401, 546
HpyF3I CTNAG 3 cut(s) 156, 492, 555
Hsp92II CATG 3 cut(s) 286, 405, 600
Kzo9I GATC 2 cut(s) 415, 460
LmnI GCTCC 1 cut(s) 17
LpnPI CCDG 7 cut(s) 6, 43, 99, 337, 419, 439, 588
Lsp1109I GCAGC 1 cut(s) 85
LweI GCATC 2 cut(s) 388, 460
MaeI CTAG 1 cut(s) 41
MalI GATC 2 cut(s) 417, 462
MboI GATC 2 cut(s) 415, 460
MboII GAAGA 4 cut(s) 256, 355, 366, 425
MflI RGATCY 1 cut(s) 415
MluCI AATT 1 cut(s) 177
MlyI GAGTC 1 cut(s) 601
MnlI CCTC 5 cut(s) 123, 151, 323, 536, 552
Mph1103I ATGCAT 1 cut(s) 403
MseI TTAA 1 cut(s) 237
MslI CAYNNNNRTG 3 cut(s) 230, 406, 601
Mva1269I GAATGC 1 cut(s) 313
NcoI CCATGG 1 cut(s) 596
NdeI CATATG 1 cut(s) 302
NdeII GATC 2 cut(s) 415, 460
NlaIII CATG 3 cut(s) 286, 405, 600
NlaIV GGNNCC 3 cut(s) 119, 479, 563
NsiI ATGCAT 1 cut(s) 403
NspI RCATGY 1 cut(s) 405
PaeI GCATGC 1 cut(s) 405
PaeR7I CTCGAG 1 cut(s) 295
PctI GAATGC 1 cut(s) 313
PfeI GAWTC 2 cut(s) 85, 488
PkrI GCNGC 1 cut(s) 75
PleI GAGTC 1 cut(s) 600
PpsI GAGTC 1 cut(s) 600
PspN4I GGNNCC 3 cut(s) 119, 479, 563
PspPI GGNCC 1 cut(s) 23
PsuI RGATCY 1 cut(s) 415
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
RseI CAYNNNNRTG 3 cut(s) 230, 406, 601
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 1 cut(s) 74
Sau3AI GATC 2 cut(s) 415, 460
Sau96I GGNCC 1 cut(s) 23
SchI GAGTC 1 cut(s) 601
SetI ASST 6 cut(s) 42, 173, 334, 483, 528, 563
SfaNI GCATC 2 cut(s) 388, 460
Sfr274I CTCGAG 1 cut(s) 295
SlaI CTCGAG 1 cut(s) 295
SmiMI CAYNNNNRTG 3 cut(s) 230, 406, 601
SmlI CTYRAG 2 cut(s) 295, 338
SmoI CTYRAG 2 cut(s) 295, 338
SphI GCATGC 1 cut(s) 405
Sse9I AATT 1 cut(s) 177
SspMI CTAG 1 cut(s) 41
StyI CCWWGG 1 cut(s) 596
TaaI ACNGT 1 cut(s) 122
TaqI TCGA 1 cut(s) 296
TasI AATT 1 cut(s) 177
TatI WGTACW 1 cut(s) 5
TfiI GAWTC 2 cut(s) 85, 488
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 5 cut(s) 160, 397, 413, 559, 582
TseI GCWGC 1 cut(s) 73
TspDTI ATGAA 1 cut(s) 330
TspRI CASTG 5 cut(s) 160, 397, 413, 559, 582
XceI RCATGY 1 cut(s) 405
XcmI CCANNNNNNNNNTGG 1 cut(s) 594
XhoI CTCGAG 1 cut(s) 295
XspI CTAG 1 cut(s) 41
Zsp2I ATGCAT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.