Rh5CG038000

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
2415840 .. 2418958
3119 bp
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UTR
Exon/CDS
Intron
Rh5CG038000.1

Sequence Viewer

Length: 618 bp
ATGGTGCTGCAGATGTGTACTGAAAATGGAGCAGGGCCAACCAGAGATGAGCTAGATTTTGAGTTCTTGGGGAATAGGAGTGGGCAGCCTTATCTGATTCAGACAAATGTTTACAAGAATGGAACTGGGAACCGTGAGATGAGGCACAGCCTTTGGTTTGACCCCACTGAGGATTATCATACCTATTCAATTCTTTGGAACAATCATCAGATTGTTTTTTTTGTTGACAAAGTTCCCATAAGGGTGTTTAAGAACAATGGTGAAGCAAACGACTTCTTCCCCAACGAGAAACCCATGTATTTGTTCTCTAGCATATGGAATGCCGATGAATGGGCGACGAGAGGTGGACTTGAGAAGACAGACTGGAAAAAATCACCATTTGTGTCTTCCTACAAGGACTTCAGTGTTGATGCATGCCAGTGGGAAGATCCATACCCTAAATGTGTGTCCACAACAACAGAGAACTGGTGGGATCAGTATGATGCTTGGCACCTTTCAGATTCTCAGAAAATGGACTATGCTTGGATACAAAGAAACCTTGTTGTTTATGATTATTGCAAGGACACTGAGCGGTTCCCAACATTGCCAGTGGAGTGTCCATTGAGTCCATGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

205

Amino Acids

24.34

Weight (kDa)

4.73

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 10 - 124 1e-42 Glycosyl hydrolases family 16
XET_C PF06955 152 - 199 6.5e-16 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 489
AccBSI CCGCTC 1 cut(s) 571
AciI CCGC 1 cut(s) 571
AclWI GGATC 2 cut(s) 422, 480
AcuI CTGAAG 1 cut(s) 385
AfaI GTAC 1 cut(s) 19
AfiI CCNNNNNNNGG 2 cut(s) 169, 330
AgsI TTSAA 1 cut(s) 189
AluBI AGCT 1 cut(s) 52
AluI AGCT 1 cut(s) 52
AlwI GGATC 2 cut(s) 422, 480
AoxI GGCC 1 cut(s) 35
ApeKI GCWGC 2 cut(s) 7, 85
AspS9I GGNCC 1 cut(s) 35
AsuHPI GGTGA 2 cut(s) 272, 366
BanI GGYRCC 1 cut(s) 489
BbsI GAAGAC 2 cut(s) 362, 378
BbvI GCAGC 1 cut(s) 97
BciVI GTATCC 1 cut(s) 519
BfaI CTAG 2 cut(s) 53, 309
BfmI CTRYAG 1 cut(s) 8
BfuI GTATCC 1 cut(s) 519
BisI GCNGC 2 cut(s) 8, 86
BlsI GCNGC 2 cut(s) 9, 87
BmgT120I GGNCC 1 cut(s) 35
BmiI GGNNCC 3 cut(s) 131, 491, 575
BmrI ACTGGG 1 cut(s) 135
BmsI GCATC 2 cut(s) 400, 472
BmuI ACTGGG 1 cut(s) 135
BpiI GAAGAC 2 cut(s) 362, 378
BpuEI CTTGAG 1 cut(s) 371
BsaJI CCNNGG 1 cut(s) 608
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 330
Bse1I ACTGG 5 cut(s) 130, 368, 418, 470, 587
Bse3DI GCAATG 1 cut(s) 581
BseDI CCNNGG 1 cut(s) 608
BseLI CCNNNNNNNGG 2 cut(s) 169, 330
BseMI GCAATG 1 cut(s) 581
BseMII CTCAG 3 cut(s) 159, 518, 558
BseNI ACTGG 5 cut(s) 130, 368, 418, 470, 587
BseXI GCAGC 1 cut(s) 97
BshFI GGCC 1 cut(s) 37
BshNI GGYRCC 1 cut(s) 489
BslI CCNNNNNNNGG 2 cut(s) 169, 330
BsmI GAATGC 1 cut(s) 325
BsnI GGCC 1 cut(s) 37
Bsp143I GATC 2 cut(s) 427, 472
Bsp19I CCATGG 1 cut(s) 608
BspACI CCGC 1 cut(s) 571
BspANI GGCC 1 cut(s) 37
BspCNI CTCAG 3 cut(s) 160, 517, 559
BspLI GGNNCC 3 cut(s) 131, 491, 575
BspMAI CTGCAG 1 cut(s) 12
BspPI GGATC 2 cut(s) 422, 480
BspT107I GGYRCC 1 cut(s) 489
BsrBI CCGCTC 1 cut(s) 571
BsrDI GCAATG 1 cut(s) 581
BsrI ACTGG 5 cut(s) 130, 368, 418, 470, 587
BssECI CCNNGG 1 cut(s) 608
BssMI GATC 2 cut(s) 427, 472
BssT1I CCWWGG 1 cut(s) 608
Bst4CI ACNGT 1 cut(s) 134
BstC8I GCNNGC 1 cut(s) 415
BstDEI CTNAG 3 cut(s) 168, 504, 567
BstDSI CCRYGG 1 cut(s) 608
BstKTI GATC 2 cut(s) 430, 475
BstMBI GATC 2 cut(s) 427, 472
BstNSI RCATGY 1 cut(s) 417
BstSFI CTRYAG 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 97
BstV2I GAAGAC 2 cut(s) 362, 378
BstX2I RGATCY 1 cut(s) 427
BstYI RGATCY 1 cut(s) 427
BsuI GTATCC 1 cut(s) 519
BsuRI GGCC 1 cut(s) 37
BtgI CCRYGG 1 cut(s) 608
BtsIMutI CAGTG 5 cut(s) 165, 409, 425, 564, 594
Cac8I GCNNGC 1 cut(s) 415
Cfr13I GGNCC 1 cut(s) 35
Csp6I GTAC 1 cut(s) 18
CviAII CATG 3 cut(s) 295, 414, 609
CviJI RGCY 4 cut(s) 37, 52, 88, 150
CviKI_1 RGCY 4 cut(s) 37, 52, 88, 150
CviQI GTAC 1 cut(s) 18
DdeI CTNAG 3 cut(s) 168, 504, 567
DpnI GATC 2 cut(s) 429, 474
DpnII GATC 2 cut(s) 427, 472
Eco130I CCWWGG 1 cut(s) 608
Eco57I CTGAAG 1 cut(s) 385
EcoT14I CCWWGG 1 cut(s) 608
EcoT22I ATGCAT 1 cut(s) 415
ErhI CCWWGG 1 cut(s) 608
FaeI CATG 3 cut(s) 298, 417, 612
FatI CATG 3 cut(s) 294, 413, 608
FauNDI CATATG 1 cut(s) 314
Fnu4HI GCNGC 2 cut(s) 8, 86
Fsp4HI GCNGC 2 cut(s) 8, 86
FspBI CTAG 2 cut(s) 53, 309
GluI GCNGC 2 cut(s) 8, 86
HaeIII GGCC 1 cut(s) 37
Hin1II CATG 3 cut(s) 298, 417, 612
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 3 cut(s) 97, 500, 604
HphI GGTGA 2 cut(s) 272, 366
Hpy166II GTNNAC 5 cut(s) 18, 112, 226, 347, 450
Hpy188I TCNGA 5 cut(s) 96, 102, 210, 499, 507
Hpy8I GTNNAC 5 cut(s) 18, 112, 226, 347, 450
Hpy99I CGWCG 1 cut(s) 340
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4V TGCA 3 cut(s) 10, 413, 558
HpyF3I CTNAG 3 cut(s) 168, 504, 567
Hsp92II CATG 3 cut(s) 298, 417, 612
Kzo9I GATC 2 cut(s) 427, 472
LmnI GCTCC 1 cut(s) 29
LpnPI CCDG 7 cut(s) 18, 55, 111, 349, 431, 451, 600
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 2 cut(s) 400, 472
MaeI CTAG 2 cut(s) 53, 309
MalI GATC 2 cut(s) 429, 474
MbiI CCGCTC 1 cut(s) 571
MboI GATC 2 cut(s) 427, 472
MboII GAAGA 4 cut(s) 268, 367, 378, 437
MflI RGATCY 1 cut(s) 427
MluCI AATT 1 cut(s) 189
MlyI GAGTC 1 cut(s) 613
MnlI CCTC 3 cut(s) 135, 163, 335
Mph1103I ATGCAT 1 cut(s) 415
MseI TTAA 1 cut(s) 249
MslI CAYNNNNRTG 3 cut(s) 242, 418, 613
Mva1269I GAATGC 1 cut(s) 325
NcoI CCATGG 1 cut(s) 608
NdeI CATATG 1 cut(s) 314
NdeII GATC 2 cut(s) 427, 472
NlaIII CATG 3 cut(s) 298, 417, 612
NlaIV GGNNCC 3 cut(s) 131, 491, 575
NsiI ATGCAT 1 cut(s) 415
NspI RCATGY 1 cut(s) 417
PaeI GCATGC 1 cut(s) 417
PctI GAATGC 1 cut(s) 325
PfeI GAWTC 2 cut(s) 97, 500
PkrI GCNGC 2 cut(s) 9, 87
PleI GAGTC 1 cut(s) 612
PpsI GAGTC 1 cut(s) 612
PspN4I GGNNCC 3 cut(s) 131, 491, 575
PspPI GGNCC 1 cut(s) 35
PstI CTGCAG 1 cut(s) 12
PsuI RGATCY 1 cut(s) 427
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
RseI CAYNNNNRTG 3 cut(s) 242, 418, 613
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 2 cut(s) 8, 86
Sau3AI GATC 2 cut(s) 427, 472
Sau96I GGNCC 1 cut(s) 35
SchI GAGTC 1 cut(s) 613
SetI ASST 5 cut(s) 54, 185, 346, 495, 540
SfaNI GCATC 2 cut(s) 400, 472
SfcI CTRYAG 1 cut(s) 8
SmiMI CAYNNNNRTG 3 cut(s) 242, 418, 613
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
SphI GCATGC 1 cut(s) 417
Sse9I AATT 1 cut(s) 189
SsiI CCGC 1 cut(s) 571
SspMI CTAG 2 cut(s) 53, 309
StyI CCWWGG 1 cut(s) 608
TaaI ACNGT 1 cut(s) 134
TasI AATT 1 cut(s) 189
TatI WGTACW 1 cut(s) 17
TfiI GAWTC 2 cut(s) 97, 500
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TscAI CASTG 5 cut(s) 172, 409, 425, 571, 594
TseI GCWGC 2 cut(s) 7, 85
TspDTI ATGAA 1 cut(s) 342
TspRI CASTG 5 cut(s) 172, 409, 425, 571, 594
XceI RCATGY 1 cut(s) 417
XcmI CCANNNNNNNNNTGG 1 cut(s) 606
XspI CTAG 2 cut(s) 53, 309
Zsp2I ATGCAT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.