FvH4_3g02630

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
1331732 .. 1333854
2123 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g02630.t1

Sequence Viewer

Length: 909 bp
ATGGAAAGAAGGGCATCTTCTCCAATGGCAGCTAGTCTTTTTTACATAGCAGCTTTCATGGTTGCTGCTTGTTGTTGTTCATATGCATCAGCTGCACCATCAACTACTTTTGAAGACAATTTCGAGATAATGTGGTCTGAAGAGCATTTCAAAACCTCTGCAGATGGGAAGATCTGGTACCTCTCGCTCGACAACAATACGGGTTGCGGTTTTCAAACGAAACAGAAGTACAGGTTTGGTTGGTTCAGCATGAAGCTCAAGTTGGTTGGAGGTGACTCTGCTGGTGTAGTGACAGCTTATTACATGTGTACTGAAAATGGAGCAGGGCCAACCAGAGATGAGCTAGATTTTGAGTTCTTGGGGAATAGAAGTGGGCAGCCTTATCTGATTCAGACAAATGTTTACAAGAATGGAACTGGGAACCGTGAGATGAGGCACAGCCTTTGGTTTGACCCCACTGAGGATTATCATAGCTATTCAATTCTTTGGAACAATAATCAGATTGTTTTTTTTGTTGACAAAGTTCCCGTAAGGGTGTTCAAGAACAATGGTGAAGCAAACAACTTCTTCCCCAACGAGAAACCCATGTACTTGTTCTCCAGCATATGGAATGCCGACGAATGGGCGACGAGAGGTGGACTTGAGAAGACAGACTGGAAAAAATCTCCATTTGTGTCTTCCTACAAGGACTTCAATGTTGATGCGTGCCAGTGGGAAGATCCATACCCAAAATGTGTGTCCACAACAACAGAGAACTGGTGGGATCAATATGATGCTTGGCACCTTTCAGATTCTCAGAAAATGGACTATGCTTGGATTCAAAGAAATCTTGTTGTTTATGATTATTGCAAGGATTCTGAAAGGTTCCCAACATTGCCAGTGGAGTGTTCATTGAGTCCATGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

303

Amino Acids

35.07

Weight (kDa)

4.94

Isoelectric Point (pI)

41.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 37 - 221 3.4e-60 Glycosyl hydrolases family 16
XET_C PF06955 249 - 296 2.6e-15 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 177
AccB1I GGYRCC 2 cut(s) 177, 780
AccB7I CCANNNNNTGG 1 cut(s) 606
AciI CCGC 1 cut(s) 207
AclWI GGATC 2 cut(s) 713, 771
AcuI CTGAAG 1 cut(s) 159
AfaI GTAC 4 cut(s) 179, 230, 310, 590
AfiI CCNNNNNNNGG 3 cut(s) 460, 606, 621
AflIII ACRYGT 1 cut(s) 303
AgsI TTSAA 7 cut(s) 113, 151, 215, 480, 541, 694, 821
AjuI GAANNNNNNNTTGG 2 cut(s) 245, 277
AluBI AGCT 7 cut(s) 32, 53, 92, 256, 296, 343, 474
AluI AGCT 7 cut(s) 32, 53, 92, 256, 296, 343, 474
AlwI GGATC 2 cut(s) 713, 771
AoxI GGCC 1 cut(s) 326
ApeKI GCWGC 5 cut(s) 29, 50, 65, 92, 376
ArsI GACNNNNNNTTYG 2 cut(s) 722, 754
Asp718I GGTACC 1 cut(s) 177
AspS9I GGNCC 1 cut(s) 326
AsuHPI GGTGA 2 cut(s) 284, 563
BanI GGYRCC 2 cut(s) 177, 780
BarI GAAGNNNNNNTAC 2 cut(s) 161, 193
BbsI GAAGAC 3 cut(s) 120, 653, 669
BbvI GCAGC 5 cut(s) 41, 52, 62, 79, 388
BccI CCATC 2 cut(s) 106, 158
BfaI CTAG 2 cut(s) 33, 344
BfmI CTRYAG 1 cut(s) 159
BglII AGATCT 1 cut(s) 171
BisI GCNGC 5 cut(s) 30, 51, 66, 93, 377
BlsI GCNGC 5 cut(s) 31, 52, 67, 94, 378
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 4 cut(s) 179, 422, 782, 866
BmrI ACTGGG 1 cut(s) 426
BmsI GCATC 4 cut(s) 23, 95, 691, 763
BmuI ACTGGG 1 cut(s) 426
BpiI GAAGAC 3 cut(s) 120, 653, 669
BpmI CTGGAG 1 cut(s) 583
BpuEI CTTGAG 2 cut(s) 242, 662
BsaJI CCNNGG 1 cut(s) 899
BsaXI ACNNNNNCTCC 2 cut(s) 581, 611
Bsc4I CCNNNNNNNGG 3 cut(s) 460, 606, 621
Bse1I ACTGG 5 cut(s) 421, 659, 709, 761, 878
Bse3DI GCAATG 1 cut(s) 872
BseDI CCNNGG 1 cut(s) 899
BseLI CCNNNNNNNGG 3 cut(s) 460, 606, 621
BseMI GCAATG 1 cut(s) 872
BseMII CTCAG 2 cut(s) 450, 809
BseNI ACTGG 5 cut(s) 421, 659, 709, 761, 878
BseXI GCAGC 5 cut(s) 41, 52, 62, 79, 388
BsgI GTGCAG 1 cut(s) 78
BshFI GGCC 1 cut(s) 328
BshNI GGYRCC 2 cut(s) 177, 780
BslI CCNNNNNNNGG 3 cut(s) 460, 606, 621
BsmI GAATGC 1 cut(s) 616
BsnI GGCC 1 cut(s) 328
Bsp143I GATC 3 cut(s) 171, 718, 763
Bsp19I CCATGG 1 cut(s) 899
BspACI CCGC 1 cut(s) 207
BspANI GGCC 1 cut(s) 328
BspCNI CTCAG 2 cut(s) 451, 808
BspLI GGNNCC 4 cut(s) 179, 422, 782, 866
BspMAI CTGCAG 1 cut(s) 163
BspPI GGATC 2 cut(s) 713, 771
BspQI GCTCTTC 1 cut(s) 135
BspT107I GGYRCC 2 cut(s) 177, 780
BsrDI GCAATG 1 cut(s) 872
BsrI ACTGG 5 cut(s) 421, 659, 709, 761, 878
BssECI CCNNGG 1 cut(s) 899
BssMI GATC 3 cut(s) 171, 718, 763
BssT1I CCWWGG 1 cut(s) 899
Bst4CI ACNGT 1 cut(s) 425
Bst6I CTCTTC 1 cut(s) 135
BstAPI GCANNNNNTGC 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 706
BstDEI CTNAG 2 cut(s) 459, 795
BstDSI CCRYGG 1 cut(s) 899
BstKTI GATC 3 cut(s) 174, 721, 766
BstMBI GATC 3 cut(s) 171, 718, 763
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNSI RCATGY 1 cut(s) 307
BstSFI CTRYAG 1 cut(s) 159
BstV1I GCAGC 5 cut(s) 41, 52, 62, 79, 388
BstV2I GAAGAC 3 cut(s) 120, 653, 669
BstX2I RGATCY 2 cut(s) 171, 718
BstYI RGATCY 2 cut(s) 171, 718
BsuRI GGCC 1 cut(s) 328
BtgI CCRYGG 1 cut(s) 899
BtsIMutI CAGTG 3 cut(s) 456, 716, 885
Cac8I GCNNGC 1 cut(s) 706
Cfr13I GGNCC 1 cut(s) 326
Csp6I GTAC 4 cut(s) 178, 229, 309, 589
CviAII CATG 5 cut(s) 58, 250, 304, 586, 900
CviQI GTAC 4 cut(s) 178, 229, 309, 589
DdeI CTNAG 2 cut(s) 459, 795
DpnI GATC 3 cut(s) 173, 720, 765
DpnII GATC 3 cut(s) 171, 718, 763
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Eco130I CCWWGG 1 cut(s) 899
Eco57I CTGAAG 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 899
EcoT22I ATGCAT 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 899
FaeI CATG 5 cut(s) 61, 253, 307, 589, 903
FalI AAGNNNNNCTT 1 cut(s) 33
FatI CATG 5 cut(s) 57, 249, 303, 585, 899
FauNDI CATATG 2 cut(s) 82, 605
Fnu4HI GCNGC 5 cut(s) 30, 51, 66, 93, 377
Fsp4HI GCNGC 5 cut(s) 30, 51, 66, 93, 377
FspBI CTAG 2 cut(s) 33, 344
GluI GCNGC 5 cut(s) 30, 51, 66, 93, 377
GsuI CTGGAG 1 cut(s) 583
HaeIII GGCC 1 cut(s) 328
Hin1II CATG 5 cut(s) 61, 253, 307, 589, 903
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HinfI GANTC 6 cut(s) 275, 388, 791, 817, 854, 895
HphI GGTGA 2 cut(s) 284, 563
Hpy166II GTNNAC 5 cut(s) 309, 403, 517, 638, 741
Hpy188I TCNGA 7 cut(s) 139, 387, 393, 501, 790, 798, 859
Hpy188III TCNNGA 2 cut(s) 124, 541
Hpy8I GTNNAC 5 cut(s) 309, 403, 517, 638, 741
Hpy99I CGWCG 2 cut(s) 620, 631
HpyAV CCTTC 1 cut(s) 3
HpyCH4III ACNGT 1 cut(s) 425
HpyCH4V TGCA 4 cut(s) 86, 95, 161, 849
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 2 cut(s) 459, 795
Hsp92II CATG 5 cut(s) 61, 253, 307, 589, 903
KpnI GGTACC 1 cut(s) 181
Kzo9I GATC 3 cut(s) 171, 718, 763
LguI GCTCTTC 1 cut(s) 135
LmnI GCTCC 1 cut(s) 320
Lsp1109I GCAGC 5 cut(s) 41, 52, 62, 79, 388
LweI GCATC 4 cut(s) 23, 95, 691, 763
MaeI CTAG 2 cut(s) 33, 344
MaeIII GTNAC 2 cut(s) 272, 289
MalI GATC 3 cut(s) 173, 720, 765
MboI GATC 3 cut(s) 171, 718, 763
MboII GAAGA 8 cut(s) 9, 125, 152, 181, 559, 658, 669, 728
MflI RGATCY 2 cut(s) 171, 718
MluCI AATT 2 cut(s) 118, 480
MlyI GAGTC 2 cut(s) 269, 904
MmeI TCCRAC 1 cut(s) 247
MnlI CCTC 6 cut(s) 166, 191, 263, 426, 454, 626
Mph1103I ATGCAT 1 cut(s) 88
MslI CAYNNNNRTG 1 cut(s) 904
MspA1I CMGCKG 1 cut(s) 92
Mva1269I GAATGC 1 cut(s) 616
MwoI GCNNNNNNNGC 1 cut(s) 92
NcoI CCATGG 1 cut(s) 899
NdeI CATATG 2 cut(s) 82, 605
NdeII GATC 3 cut(s) 171, 718, 763
NlaIII CATG 5 cut(s) 61, 253, 307, 589, 903
NlaIV GGNNCC 4 cut(s) 179, 422, 782, 866
NmuCI GTSAC 2 cut(s) 272, 289
NsiI ATGCAT 1 cut(s) 88
NspI RCATGY 1 cut(s) 307
PciI ACATGT 1 cut(s) 303
PciSI GCTCTTC 1 cut(s) 135
PctI GAATGC 1 cut(s) 616
PfeI GAWTC 4 cut(s) 388, 791, 817, 854
PflMI CCANNNNNTGG 1 cut(s) 606
PkrI GCNGC 5 cut(s) 31, 52, 67, 94, 378
PleI GAGTC 2 cut(s) 269, 903
PpsI GAGTC 2 cut(s) 269, 903
PscI ACATGT 1 cut(s) 303
PspN4I GGNNCC 4 cut(s) 179, 422, 782, 866
PspPI GGNCC 1 cut(s) 326
PstI CTGCAG 1 cut(s) 163
PsuI RGATCY 2 cut(s) 171, 718
PvuII CAGCTG 1 cut(s) 92
RsaI GTAC 4 cut(s) 179, 230, 310, 590
RsaNI GTAC 4 cut(s) 178, 229, 309, 589
RseI CAYNNNNRTG 1 cut(s) 904
SapI GCTCTTC 1 cut(s) 135
SatI GCNGC 5 cut(s) 30, 51, 66, 93, 377
Sau3AI GATC 3 cut(s) 171, 718, 763
Sau96I GGNCC 1 cut(s) 326
SchI GAGTC 2 cut(s) 269, 904
SfaNI GCATC 4 cut(s) 23, 95, 691, 763
SfcI CTRYAG 1 cut(s) 159
SmiMI CAYNNNNRTG 1 cut(s) 904
SmlI CTYRAG 2 cut(s) 257, 641
SmoI CTYRAG 2 cut(s) 257, 641
Sse9I AATT 2 cut(s) 118, 480
SsiI CCGC 1 cut(s) 207
SspMI CTAG 2 cut(s) 33, 344
StyI CCWWGG 1 cut(s) 899
TaaI ACNGT 1 cut(s) 425
TaqI TCGA 2 cut(s) 123, 189
TasI AATT 2 cut(s) 118, 480
TatI WGTACW 3 cut(s) 228, 308, 588
TfiI GAWTC 4 cut(s) 388, 791, 817, 854
TscAI CASTG 3 cut(s) 463, 716, 885
TseFI GTSAC 2 cut(s) 272, 289
TseI GCWGC 5 cut(s) 29, 50, 65, 92, 376
Tsp45I GTSAC 2 cut(s) 272, 289
TspDTI ATGAA 4 cut(s) 46, 69, 266, 879
TspRI CASTG 3 cut(s) 463, 716, 885
Van91I CCANNNNNTGG 1 cut(s) 606
XceI RCATGY 1 cut(s) 307
XspI CTAG 2 cut(s) 33, 344
Zsp2I ATGCAT 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.