Rroxscaffold_5G00358140

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
38186761 .. 38189052
2292 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00358140.1

Sequence Viewer

Length: 459 bp
ATGAAGAAGGCTTACCATAGTCCAGCAGGAAAGGTACCACTTTCTGCGTCCATCTATAGCTACAATTTATTTCTTTTCCTACCTGAAAATGTGGGTTTAGTTACTATTTCATGTGTTATAGAAAACAAGTCTTTACCATCCGTGGGTTTGATGAAAGCTCTGTTGGGTGATGTTCTTCTTCGATTTGGGGAGATGGGTAGATTGTTAGGTGACATGTGCCTTCATCCACCTAGCTCTAAGATCGAGCTGAAAGAAGCTTCCAATCTCGGACTAGTTCTCTCTCTCCACAATGGAAAGAAGAGCAACTTCTCCGATGGCTGCTATTCTTGTTTACATTGTAGTTTCATGGTTGCTTCTTATTGTTCTTCATTTGTATCAACTGCACCATCAACTTCTTTTGAAGACAATTTTGACATAATGCGGTCCAAGGACCATTTCAAAACCTCTGCAGGTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

152

Amino Acids

16.45

Weight (kDa)

8.21

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 440
Acc36I ACCTGC 1 cut(s) 440
Acc65I GGTACC 1 cut(s) 34
AccB1I GGYRCC 1 cut(s) 34
AciI CCGC 1 cut(s) 421
AfaI GTAC 1 cut(s) 36
AfiI CCNNNNNNNGG 1 cut(s) 143
AflIII ACRYGT 1 cut(s) 213
AgsI TTSAA 2 cut(s) 401, 439
AhlI ACTAGT 1 cut(s) 271
AjuI GAANNNNNNNTTGG 4 cut(s) 146, 178, 419, 451
AluBI AGCT 5 cut(s) 60, 158, 234, 247, 257
AluI AGCT 5 cut(s) 60, 158, 234, 247, 257
ApeKI GCWGC 1 cut(s) 318
Asp718I GGTACC 1 cut(s) 34
AspS9I GGNCC 2 cut(s) 423, 430
AsuHPI GGTGA 2 cut(s) 179, 221
AvaII GGWCC 2 cut(s) 423, 430
BanI GGYRCC 1 cut(s) 34
BarI GAAGNNNNNNTAC 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 408
BbvI GCAGC 1 cut(s) 305
BccI CCATC 5 cut(s) 59, 145, 187, 308, 394
BcuI ACTAGT 1 cut(s) 271
BfaI CTAG 2 cut(s) 231, 272
BfmI CTRYAG 2 cut(s) 55, 447
BfuAI ACCTGC 1 cut(s) 440
BisI GCNGC 1 cut(s) 319
BlsI GCNGC 1 cut(s) 320
Bme18I GGWCC 2 cut(s) 423, 430
BmgT120I GGNCC 2 cut(s) 423, 430
BmiI GGNNCC 1 cut(s) 36
BpiI GAAGAC 1 cut(s) 408
BsaJI CCNNGG 2 cut(s) 141, 426
Bsc4I CCNNNNNNNGG 1 cut(s) 143
BseDI CCNNGG 2 cut(s) 141, 426
BseGI GGATG 2 cut(s) 137, 223
BseLI CCNNNNNNNGG 1 cut(s) 143
BseXI GCAGC 1 cut(s) 305
BsgI GTGCAG 1 cut(s) 366
BshNI GGYRCC 1 cut(s) 34
BslI CCNNNNNNNGG 1 cut(s) 143
Bsp143I GATC 1 cut(s) 240
BspACI CCGC 1 cut(s) 421
BspLI GGNNCC 1 cut(s) 36
BspMAI CTGCAG 1 cut(s) 451
BspMI ACCTGC 1 cut(s) 440
BspQI GCTCTTC 1 cut(s) 293
BspT107I GGYRCC 1 cut(s) 34
BssECI CCNNGG 2 cut(s) 141, 426
BssMI GATC 1 cut(s) 240
BssT1I CCWWGG 1 cut(s) 426
Bst6I CTCTTC 1 cut(s) 293
BstDEI CTNAG 1 cut(s) 237
BstDSI CCRYGG 1 cut(s) 141
BstF5I GGATG 2 cut(s) 137, 223
BstKTI GATC 1 cut(s) 243
BstMBI GATC 1 cut(s) 240
BstNSI RCATGY 1 cut(s) 217
BstSFI CTRYAG 2 cut(s) 55, 447
BstV1I GCAGC 1 cut(s) 305
BstV2I GAAGAC 1 cut(s) 408
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 2 cut(s) 137, 223
BveI ACCTGC 1 cut(s) 440
Cfr13I GGNCC 2 cut(s) 423, 430
CseI GACGC 1 cut(s) 36
Csp6I GTAC 1 cut(s) 35
CviAII CATG 3 cut(s) 111, 214, 346
CviJI RGCY 7 cut(s) 11, 60, 158, 234, 247, 257, 318
CviKI_1 RGCY 7 cut(s) 11, 60, 158, 234, 247, 257, 318
CviQI GTAC 1 cut(s) 35
DdeI CTNAG 1 cut(s) 237
DpnI GATC 1 cut(s) 242
DpnII GATC 1 cut(s) 240
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
Eco130I CCWWGG 1 cut(s) 426
Eco47I GGWCC 2 cut(s) 423, 430
EcoT14I CCWWGG 1 cut(s) 426
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 3 cut(s) 114, 217, 349
FaiI YATR 7 cut(s) 18, 57, 112, 119, 215, 347, 416
FalI AAGNNNNNCTT 2 cut(s) 290, 322
FatI CATG 3 cut(s) 110, 213, 345
Fnu4HI GCNGC 1 cut(s) 319
FokI GGATG 2 cut(s) 124, 210
Fsp4HI GCNGC 1 cut(s) 319
FspBI CTAG 2 cut(s) 231, 272
GluI GCNGC 1 cut(s) 319
HgaI GACGC 1 cut(s) 36
Hin1II CATG 3 cut(s) 114, 217, 349
HindIII AAGCTT 1 cut(s) 255
HphI GGTGA 2 cut(s) 179, 221
Hpy166II GTNNAC 1 cut(s) 332
Hpy188I TCNGA 2 cut(s) 269, 313
Hpy8I GTNNAC 1 cut(s) 332
HpyAV CCTTC 1 cut(s) 230
HpyCH4V TGCA 2 cut(s) 383, 449
HpyF3I CTNAG 1 cut(s) 237
Hsp92II CATG 3 cut(s) 114, 217, 349
KpnI GGTACC 1 cut(s) 38
Kzo9I GATC 1 cut(s) 240
LguI GCTCTTC 1 cut(s) 293
LpnPI CCDG 4 cut(s) 12, 36, 96, 435
Lsp1109I GCAGC 1 cut(s) 305
MaeI CTAG 2 cut(s) 231, 272
MaeIII GTNAC 2 cut(s) 100, 209
MalI GATC 1 cut(s) 242
MboI GATC 1 cut(s) 240
MboII GAAGA 6 cut(s) 16, 167, 170, 310, 357, 413
MluCI AATT 2 cut(s) 64, 406
MnlI CCTC 1 cut(s) 454
NdeII GATC 1 cut(s) 240
NlaIII CATG 3 cut(s) 114, 217, 349
NlaIV GGNNCC 1 cut(s) 36
NmuCI GTSAC 1 cut(s) 209
NspI RCATGY 1 cut(s) 217
PaqCI CACCTGC 1 cut(s) 440
PciI ACATGT 1 cut(s) 213
PciSI GCTCTTC 1 cut(s) 293
PkrI GCNGC 1 cut(s) 320
PscI ACATGT 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 2 cut(s) 423, 430
PstI CTGCAG 1 cut(s) 451
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
SapI GCTCTTC 1 cut(s) 293
SatI GCNGC 1 cut(s) 319
Sau3AI GATC 1 cut(s) 240
Sau96I GGNCC 2 cut(s) 423, 430
SfcI CTRYAG 2 cut(s) 55, 447
SinI GGWCC 2 cut(s) 423, 430
SpeI ACTAGT 1 cut(s) 271
Sse9I AATT 2 cut(s) 64, 406
SsiI CCGC 1 cut(s) 421
SspMI CTAG 2 cut(s) 231, 272
StyI CCWWGG 1 cut(s) 426
TaqI TCGA 2 cut(s) 181, 243
TasI AATT 2 cut(s) 64, 406
TseFI GTSAC 1 cut(s) 209
TseI GCWGC 1 cut(s) 318
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 6 cut(s) 17, 99, 167, 212, 334, 357
TspGWI ACGGA 1 cut(s) 130
VpaK11BI GGWCC 2 cut(s) 423, 430
XceI RCATGY 1 cut(s) 217
XspI CTAG 2 cut(s) 231, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.