Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0009539

Physical Location & Seq

Genomic Coordinates Forward (+)

39902378 .. 39904802

Gene Structure 2425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1315100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGAAAGAAGGGCGTCTCCGATGCCTGTTCTTCTTTATATTGCAGCTCTCATGGCTGCTTCTTGTTGTTCTTCATCAGAGGCAGCTGCCCCAAAAAGTTCTTTCGAGGACAATTTCGATATAATGTGGTCTGAGGACCATTTTACAACTTCAGAAGATAAGCAGATCTGGTATCTTTCCCTCGACAAAGACACAGGTTGTGGATTTCAAACGAAACAAAAGTACAGATTTGGATGGTTTAGCATGAAGATCAAGTTGGTCGGAGGTGACTCCGCAGGCGTAGTCACAGCTTATTATATGTGCACCGAAAATGGAGCAGGGCCAGAGAGGGATGAGCTAGATTTTGAGTTCTTGGGGAATAGAAGCGGGCAACCTTATCTGATCCAGACAAATGTGTACAAGAATGGAACTGGAAACCGTGAGATGAGGCACCAGCTTTGGTTCGACCCCACTGAGGAATATCATACTTACTCAATTCTCTGGAATAATCATCAGATTGTGTTTTTCGTGGACAAAGTTCCCATAAGGGTGTTCAAGAACGATGGGGAAGCAAACAACTTCTTCCCCAATGAGAAGCCGATGTACTTATTCTCCAGCATATGGAACGCAGACGATTGGGCCACCAGAGGTGGGATTGAGAAGACAGACTGGAAGAAATCACCATTTGTGTCCTCCTACAAGGACTTCAGTGTTGATGCCTGCCAATGGGAGGACCCATTCCCTGCGTGCGTCTCCACCACAACAAAAAACTGGTGGGACCAGTATGATGCCTGGCACCTATCAGATGCCCAGAAGAAGGATTTTGCTTGGATACAGAGAAATATGGTGATTTATGATTATTGCAAGGATTCTGAACGCTTCCCAACATTGCCAGTGGAGTGCCCATTGAGTCCATGGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

301

Amino Acids

34.94

Weight (kDa)

4.9

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	35 - 219	1.2e-60	Glycosyl hydrolases family 16
XET_C	PF06955	247 - 294	1.3e-15	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11545
fragaria_vesca	FvH4_3g02630
malus_domestica	MD00G1180100.v1.1 MD10G1315100.v1.1
prunus_persica	Prupe.4G025600_v2.0.a1 Prupe.4G025600_v2.0.a1 Prupe.4G025600_v2.0.a1 Prupe.4G025600_v2.0.a1
pyrus_communis	pycom05g31080 pycom10g26730
rosa_chinensis	RchiOBHm_Chr5g0003921
rosa_laevigata	RLG00000031188
rosa_multiflora	Rmu_sc0011733.1_g000002 Rmu_sc0019391.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072050 Rroxscaffold_5G00358140
rosa_rugosa	Rorug04G0407900
rosa_samantha	Rh5AG035500 Rh5BG034100 Rh5CG038000 Rh5DG034200
rosa_wichuraiana	Rw5G003250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	429, 774
AccB7I	CCANNNNNTGG	1 cut(s)	600
AciI	CCGC	2 cut(s)	273, 366
AclWI	GGATC	1 cut(s)	376
AcuI	CTGAAG	2 cut(s)	135, 670
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	3 cut(s)	224, 398, 584
AfiI	CCNNNNNNNGG	6 cut(s)	454, 600, 630, 705, 709, 796
AgsI	TTSAA	2 cut(s)	209, 535
AjnI	CCWGG	1 cut(s)	770
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AluBI	AGCT	5 cut(s)	47, 86, 290, 337, 436
AluI	AGCT	5 cut(s)	47, 86, 290, 337, 436
Alw21I	GWGCWC	1 cut(s)	305
Alw26I	GTCTC	2 cut(s)	21, 736
Alw44I	GTGCAC	1 cut(s)	301
AlwI	GGATC	1 cut(s)	376
AoxI	GGCC	2 cut(s)	320, 618
ApaLI	GTGCAC	1 cut(s)	301
ApeKI	GCWGC	4 cut(s)	44, 56, 83, 86
AspS9I	GGNCC	5 cut(s)	136, 320, 618, 712, 757
AsuHPI	GGTGA	3 cut(s)	278, 651, 838
AvaII	GGWCC	3 cut(s)	136, 712, 757
BaeGI	GKGCMC	2 cut(s)	305, 884
BanI	GGYRCC	2 cut(s)	429, 774
BarI	GAAGNNNNNNTAC	2 cut(s)	566, 598
BbsI	GAAGAC	1 cut(s)	647
Bbv12I	GWGCWC	1 cut(s)	305
BbvI	GCAGC	4 cut(s)	43, 56, 73, 95
BccI	CCATC	2 cut(s)	228, 536
BciT130I	CCWGG	1 cut(s)	772
BciVI	GTATCC	1 cut(s)	804
BcoDI	GTCTC	2 cut(s)	21, 736
BfaI	CTAG	1 cut(s)	338
BfuI	GTATCC	1 cut(s)	804
BglII	AGATCT	1 cut(s)	165
BisI	GCNGC	4 cut(s)	45, 57, 84, 87
BlsI	GCNGC	4 cut(s)	46, 58, 85, 88
Bme1390I	CCNGG	1 cut(s)	772
Bme18I	GGWCC	3 cut(s)	136, 712, 757
BmgT120I	GGNCC	5 cut(s)	136, 320, 618, 712, 757
BmiI	GGNNCC	4 cut(s)	431, 714, 758, 776
BmrFI	CCNGG	1 cut(s)	772
BmsI	GCATC	4 cut(s)	12, 685, 757, 775
BpiI	GAAGAC	1 cut(s)	647
BpmI	CTGGAG	1 cut(s)	577
BsaHI	GRCGYC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	893
BsaXI	ACNNNNNCTCC	2 cut(s)	575, 605
Bsc4I	CCNNNNNNNGG	6 cut(s)	454, 600, 630, 705, 709, 796
Bse1I	ACTGG	5 cut(s)	415, 653, 755, 760, 872
Bse3DI	GCAATG	1 cut(s)	866
BseBI	CCWGG	1 cut(s)	772
BseDI	CCNNGG	1 cut(s)	893
BseGI	GGATG	2 cut(s)	239, 337
BseLI	CCNNNNNNNGG	6 cut(s)	454, 600, 630, 705, 709, 796
BseMI	GCAATG	1 cut(s)	866
BseMII	CTCAG	2 cut(s)	123, 444
BseNI	ACTGG	5 cut(s)	415, 653, 755, 760, 872
BseSI	GKGCMC	2 cut(s)	305, 884
BseXI	GCAGC	4 cut(s)	43, 56, 73, 95
BshFI	GGCC	2 cut(s)	322, 620
BshNI	GGYRCC	2 cut(s)	429, 774
BsiHKAI	GWGCWC	1 cut(s)	305
BslFI	GGGAC	1 cut(s)	770
BslI	CCNNNNNNNGG	6 cut(s)	454, 600, 630, 705, 709, 796
BsmAI	GTCTC	2 cut(s)	21, 736
BsmBI	CGTCTC	2 cut(s)	21, 736
BsmFI	GGGAC	1 cut(s)	770
BsnI	GGCC	2 cut(s)	322, 620
Bsp1286I	GDGCHC	2 cut(s)	305, 884
Bsp1407I	TGTACA	1 cut(s)	396
Bsp143I	GATC	3 cut(s)	165, 249, 381
Bsp19I	CCATGG	1 cut(s)	893
BspACI	CCGC	2 cut(s)	273, 366
BspANI	GGCC	2 cut(s)	322, 620
BspCNI	CTCAG	2 cut(s)	124, 445
BspLI	GGNNCC	4 cut(s)	431, 714, 758, 776
BspPI	GGATC	1 cut(s)	376
BspT107I	GGYRCC	2 cut(s)	429, 774
BsrDI	GCAATG	1 cut(s)	866
BsrGI	TGTACA	1 cut(s)	396
BsrI	ACTGG	5 cut(s)	415, 653, 755, 760, 872
BssECI	CCNNGG	1 cut(s)	893
BssMI	GATC	3 cut(s)	165, 249, 381
BssNI	GRCGYC	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	893
Bst2UI	CCWGG	1 cut(s)	772
Bst4CI	ACNGT	1 cut(s)	419
BstACI	GRCGYC	1 cut(s)	14
BstAUI	TGTACA	1 cut(s)	396
BstC8I	GCNNGC	4 cut(s)	277, 368, 700, 727
BstDEI	CTNAG	2 cut(s)	132, 453
BstDSI	CCRYGG	1 cut(s)	893
BstF5I	GGATG	2 cut(s)	239, 337
BstKTI	GATC	3 cut(s)	168, 252, 384
BstMAI	GTCTC	2 cut(s)	21, 736
BstMBI	GATC	3 cut(s)	165, 249, 381
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	1 cut(s)	772
BstSCI	CCNGG	1 cut(s)	770
BstSLI	GKGCMC	2 cut(s)	305, 884
BstV1I	GCAGC	4 cut(s)	43, 56, 73, 95
BstV2I	GAAGAC	1 cut(s)	647
BstX2I	RGATCY	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	165
BsuI	GTATCC	1 cut(s)	804
BsuRI	GGCC	2 cut(s)	322, 620
BtgI	CCRYGG	1 cut(s)	893
BtsCI	GGATG	2 cut(s)	239, 337
BtsIMutI	CAGTG	3 cut(s)	450, 694, 879
Cac8I	GCNNGC	4 cut(s)	277, 368, 700, 727
Cfr13I	GGNCC	5 cut(s)	136, 320, 618, 712, 757
CseI	GACGC	2 cut(s)	3, 718
Csp6I	GTAC	3 cut(s)	223, 397, 583
CviAII	CATG	3 cut(s)	52, 244, 894
CviJI	RGCY	9 cut(s)	47, 56, 86, 290, 322, 337, 436, 577, 620
CviKI_1	RGCY	9 cut(s)	47, 56, 86, 290, 322, 337, 436, 577, 620
CviQI	GTAC	3 cut(s)	223, 397, 583
DdeI	CTNAG	2 cut(s)	132, 453
DpnI	GATC	3 cut(s)	167, 251, 383
DpnII	GATC	3 cut(s)	165, 249, 381
Eco130I	CCWWGG	1 cut(s)	893
Eco47I	GGWCC	3 cut(s)	136, 712, 757
Eco57I	CTGAAG	2 cut(s)	135, 670
EcoO109I	RGGNCCY	1 cut(s)	712
EcoRII	CCWGG	1 cut(s)	770
EcoT14I	CCWWGG	1 cut(s)	893
ErhI	CCWWGG	1 cut(s)	893
Esp3I	CGTCTC	2 cut(s)	21, 736
FaeI	CATG	3 cut(s)	55, 247, 897
FaqI	GGGAC	1 cut(s)	770
FatI	CATG	3 cut(s)	51, 243, 893
FauI	CCCGC	1 cut(s)	359
FauNDI	CATATG	1 cut(s)	599
Fnu4HI	GCNGC	4 cut(s)	45, 57, 84, 87
FokI	GGATG	2 cut(s)	246, 344
Fsp4HI	GCNGC	4 cut(s)	45, 57, 84, 87
FspBI	CTAG	1 cut(s)	338
GluI	GCNGC	4 cut(s)	45, 57, 84, 87
GsuI	CTGGAG	1 cut(s)	577
HaeIII	GGCC	2 cut(s)	322, 620
HgaI	GACGC	2 cut(s)	3, 718
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	3 cut(s)	55, 247, 897
HinfI	GANTC	3 cut(s)	269, 848, 889
HphI	GGTGA	3 cut(s)	278, 651, 838
Hpy166II	GTNNAC	3 cut(s)	303, 397, 511
Hpy188I	TCNGA	9 cut(s)	21, 79, 133, 154, 263, 381, 495, 784, 853
Hpy188III	TCNNGA	3 cut(s)	385, 481, 535
Hpy8I	GTNNAC	3 cut(s)	303, 397, 511
HpyAV	CCTTC	2 cut(s)	3, 790
HpyCH4III	ACNGT	1 cut(s)	419
HpyCH4V	TGCA	3 cut(s)	44, 303, 843
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	2 cut(s)	132, 453
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	3 cut(s)	55, 247, 897
Kzo9I	GATC	3 cut(s)	165, 249, 381
LmnI	GCTCC	1 cut(s)	314
Lsp1109I	GCAGC	4 cut(s)	43, 56, 73, 95
LweI	GCATC	4 cut(s)	12, 685, 757, 775
MaeI	CTAG	1 cut(s)	338
MaeIII	GTNAC	2 cut(s)	266, 283
MalI	GATC	3 cut(s)	167, 251, 383
MboI	GATC	3 cut(s)	165, 249, 381
MboII	GAAGA	8 cut(s)	23, 63, 167, 259, 553, 652, 664, 805
MflI	RGATCY	1 cut(s)	165
MhlI	GDGCHC	2 cut(s)	305, 884
MluCI	AATT	2 cut(s)	112, 474
MlyI	GAGTC	2 cut(s)	263, 898
MmeI	TCCRAC	1 cut(s)	241
MslI	CAYNNNNRTG	1 cut(s)	527
MspA1I	CMGCKG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	772
MvaI	CCWGG	1 cut(s)	772
MwoI	GCNNNNNNNGC	1 cut(s)	53
NcoI	CCATGG	1 cut(s)	893
NdeI	CATATG	1 cut(s)	599
NdeII	GATC	3 cut(s)	165, 249, 381
NlaIII	CATG	3 cut(s)	55, 247, 897
NlaIV	GGNNCC	4 cut(s)	431, 714, 758, 776
NmuCI	GTSAC	2 cut(s)	266, 283
PfeI	GAWTC	1 cut(s)	848
PflMI	CCANNNNNTGG	1 cut(s)	600
PkrI	GCNGC	4 cut(s)	46, 58, 85, 88
PleI	GAGTC	2 cut(s)	263, 897
PpsI	GAGTC	2 cut(s)	263, 897
PpuMI	RGGWCCY	1 cut(s)	712
Psp5II	RGGWCCY	1 cut(s)	712
Psp6I	CCWGG	1 cut(s)	770
PspGI	CCWGG	1 cut(s)	770
PspN4I	GGNNCC	4 cut(s)	431, 714, 758, 776
PspPI	GGNCC	5 cut(s)	136, 320, 618, 712, 757
PspPPI	RGGWCCY	1 cut(s)	712
PsuI	RGATCY	1 cut(s)	165
PvuII	CAGCTG	1 cut(s)	86
RsaI	GTAC	3 cut(s)	224, 398, 584
RsaNI	GTAC	3 cut(s)	223, 397, 583
RseI	CAYNNNNRTG	1 cut(s)	527
SatI	GCNGC	4 cut(s)	45, 57, 84, 87
Sau3AI	GATC	3 cut(s)	165, 249, 381
Sau96I	GGNCC	5 cut(s)	136, 320, 618, 712, 757
SchI	GAGTC	2 cut(s)	263, 898
ScrFI	CCNGG	1 cut(s)	772
SduI	GDGCHC	2 cut(s)	305, 884
SfaNI	GCATC	4 cut(s)	12, 685, 757, 775
SinI	GGWCC	3 cut(s)	136, 712, 757
SmiMI	CAYNNNNRTG	1 cut(s)	527
Sse9I	AATT	2 cut(s)	112, 474
SsiI	CCGC	2 cut(s)	273, 366
SspMI	CTAG	1 cut(s)	338
StyD4I	CCNGG	1 cut(s)	770
StyI	CCWWGG	1 cut(s)	893
TaaI	ACNGT	1 cut(s)	419
TaqI	TCGA	4 cut(s)	105, 117, 183, 444
TasI	AATT	2 cut(s)	112, 474
TatI	WGTACW	3 cut(s)	222, 396, 582
TfiI	GAWTC	1 cut(s)	848
TscAI	CASTG	3 cut(s)	457, 694, 879
TseFI	GTSAC	2 cut(s)	266, 283
TseI	GCWGC	4 cut(s)	44, 56, 83, 86
Tsp45I	GTSAC	2 cut(s)	266, 283
TspDTI	ATGAA	2 cut(s)	63, 260
TspRI	CASTG	3 cut(s)	457, 694, 879
Van91I	CCANNNNNTGG	1 cut(s)	600
VneI	GTGCAC	1 cut(s)	301
VpaK11BI	GGWCC	3 cut(s)	136, 712, 757
XcmI	CCANNNNNNNNNTGG	1 cut(s)	891
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.