Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0009539

Physical Location & Seq

Genomic Coordinates Forward (+)

42502624 .. 42504667

Gene Structure 2044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1180100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGAAAGAAGGGCGTTTCCAATGCCTATTCTTCTTTACATTGCAGTCTTCATAGCTGCTTCTTGTTCTTCATCAGAAGCAGCTGCCACGACAAGTTCTTTCGACGACAATTTCAGTATAATGTGGTCTGAGAACCATTTTACAACTTCAGCAGATAAGCAGATCTGGTATCTTTCCCTCGACAAAGACACAGGTTGTGGATTCCAAACGAAACAAAAGTACAGATTTGGATGGTTTAGCATGAAGATCAAGTTGGTCGGAGGTGACTCCGCGGGCGTAGTCACAGCTTATTATATGTGCTCAGAAAATGGAGCAGGGCCAGAGAGGGATGAGCTAGATTTTGAGTTCTTGGGGAATAGGACTGGGCAACCTTATCTGATCCAGACAAATGTGTTCAAGAACGGAACTGGAAACCGAGAGATGAGGCACCAGCTTTGGTTTGACCCGACTGAGGATTATCATTCTTATTCAATTCTCTGGAACAATCATCAGATTGTGTTTTTTGTGGACAAAGTTCCCATAAGGGTGTACAAGAACAATGGGGAAGCAAACAACTTCTTCCCCAACGAGAAGCCAATGTACTTGTTCTCCAGCATATGGAACGCGGACAGTTGGGCCACCAGAGGTGGGCTGGAGAAGACTGACTGGACGAAAGCACCATTTGTGTCCTCCTACACCGAGTTCAGTGTGGATGCTTGCCAATGGGAGGACCCATTCCCTGCGTGCGTCTCCACCACAACAGATAACTGGTGGGACCAGTATAATGCCTGGCACCTATCCGACGATCAGAAGAAGGATTATGCTTGGATACAGAGAAATATGGTGATCTATGATTACTGCAAGGATTCCGAGCGATTCCCAACATTGCCGGTGGAGTGCCCATTGAGTCCATGGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

300

Amino Acids

34.77

Weight (kDa)

4.85

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	35 - 218	2e-60	Glycosyl hydrolases family 16
XET_C	PF06955	246 - 293	2.5e-15	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11545
fragaria_vesca	FvH4_3g02630
malus_domestica	MD00G1180100.v1.1 MD10G1315100.v1.1
prunus_persica	Prupe.4G025600_v2.0.a1 Prupe.4G025600_v2.0.a1 Prupe.4G025600_v2.0.a1 Prupe.4G025600_v2.0.a1
pyrus_communis	pycom05g31080 pycom10g26730
rosa_chinensis	RchiOBHm_Chr5g0003921
rosa_laevigata	RLG00000031188
rosa_multiflora	Rmu_sc0011733.1_g000002 Rmu_sc0019391.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072050 Rroxscaffold_5G00358140
rosa_rugosa	Rorug04G0407900
rosa_samantha	Rh5AG035500 Rh5BG034100 Rh5CG038000 Rh5DG034200
rosa_wichuraiana	Rw5G003250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	426, 771
AccB7I	CCANNNNNTGG	1 cut(s)	597
AccII	CGCG	2 cut(s)	272, 605
AciI	CCGC	3 cut(s)	270, 272, 605
AclWI	GGATC	1 cut(s)	373
AcuI	CTGAAG	1 cut(s)	132
AfaI	GTAC	3 cut(s)	221, 530, 581
AfiI	CCNNNNNNNGG	4 cut(s)	451, 597, 627, 706
AgsI	TTSAA	2 cut(s)	397, 471
AjnI	CCWGG	1 cut(s)	767
AjuI	GAANNNNNNNTTGG	2 cut(s)	236, 268
AluBI	AGCT	5 cut(s)	56, 83, 287, 334, 433
AluI	AGCT	5 cut(s)	56, 83, 287, 334, 433
Alw21I	GWGCWC	1 cut(s)	302
Alw26I	GTCTC	1 cut(s)	733
AlwI	GGATC	1 cut(s)	373
AoxI	GGCC	2 cut(s)	317, 615
ApeKI	GCWGC	3 cut(s)	56, 80, 83
AspS9I	GGNCC	4 cut(s)	317, 615, 709, 754
AsuHPI	GGTGA	2 cut(s)	275, 835
AvaII	GGWCC	2 cut(s)	709, 754
BaeGI	GKGCMC	1 cut(s)	881
BanI	GGYRCC	2 cut(s)	426, 771
BarI	GAAGNNNNNNTAC	2 cut(s)	563, 595
BbsI	GAAGAC	2 cut(s)	40, 644
Bbv12I	GWGCWC	1 cut(s)	302
BbvI	GCAGC	3 cut(s)	43, 70, 92
BccI	CCATC	1 cut(s)	225
BciT130I	CCWGG	1 cut(s)	769
BciVI	GTATCC	1 cut(s)	801
BcoDI	GTCTC	1 cut(s)	733
BfaI	CTAG	1 cut(s)	335
BfuI	GTATCC	1 cut(s)	801
BglII	AGATCT	1 cut(s)	162
BisI	GCNGC	3 cut(s)	57, 81, 84
BlsI	GCNGC	3 cut(s)	58, 82, 85
Bme1390I	CCNGG	1 cut(s)	769
Bme18I	GGWCC	2 cut(s)	709, 754
BmgT120I	GGNCC	4 cut(s)	317, 615, 709, 754
BmiI	GGNNCC	4 cut(s)	428, 711, 755, 773
BmrFI	CCNGG	1 cut(s)	769
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	1 cut(s)	682
BmuI	ACTGGG	1 cut(s)	372
BpiI	GAAGAC	2 cut(s)	40, 644
BpmI	CTGGAG	2 cut(s)	574, 653
BsaJI	CCNNGG	2 cut(s)	270, 890
BsaXI	ACNNNNNCTCC	2 cut(s)	572, 602
Bsc4I	CCNNNNNNNGG	4 cut(s)	451, 597, 627, 706
Bse118I	RCCGGY	1 cut(s)	868
Bse1I	ACTGG	5 cut(s)	367, 412, 650, 752, 757
Bse3DI	GCAATG	2 cut(s)	39, 863
BseBI	CCWGG	1 cut(s)	769
BseDI	CCNNGG	2 cut(s)	270, 890
BseGI	GGATG	3 cut(s)	236, 334, 697
BseLI	CCNNNNNNNGG	4 cut(s)	451, 597, 627, 706
BseMI	GCAATG	2 cut(s)	39, 863
BseMII	CTCAG	3 cut(s)	120, 315, 441
BseNI	ACTGG	5 cut(s)	367, 412, 650, 752, 757
BseSI	GKGCMC	1 cut(s)	881
BseXI	GCAGC	3 cut(s)	43, 70, 92
Bsh1236I	CGCG	2 cut(s)	272, 605
BshFI	GGCC	2 cut(s)	319, 617
BshNI	GGYRCC	2 cut(s)	426, 771
BsiHKAI	GWGCWC	1 cut(s)	302
BsiSI	CCGG	1 cut(s)	869
BslFI	GGGAC	1 cut(s)	767
BslI	CCNNNNNNNGG	4 cut(s)	451, 597, 627, 706
BsmAI	GTCTC	1 cut(s)	733
BsmBI	CGTCTC	1 cut(s)	733
BsmFI	GGGAC	1 cut(s)	767
BsnI	GGCC	2 cut(s)	319, 617
Bsp1286I	GDGCHC	2 cut(s)	302, 881
Bsp1407I	TGTACA	1 cut(s)	528
Bsp143I	GATC	5 cut(s)	162, 246, 378, 784, 825
Bsp19I	CCATGG	1 cut(s)	890
BspACI	CCGC	3 cut(s)	270, 272, 605
BspANI	GGCC	2 cut(s)	319, 617
BspCNI	CTCAG	3 cut(s)	121, 314, 442
BspFNI	CGCG	2 cut(s)	272, 605
BspLI	GGNNCC	4 cut(s)	428, 711, 755, 773
BspPI	GGATC	1 cut(s)	373
BspT107I	GGYRCC	2 cut(s)	426, 771
BsrDI	GCAATG	2 cut(s)	39, 863
BsrFI	RCCGGY	1 cut(s)	868
BsrGI	TGTACA	1 cut(s)	528
BsrI	ACTGG	5 cut(s)	367, 412, 650, 752, 757
BssAI	RCCGGY	1 cut(s)	868
BssECI	CCNNGG	2 cut(s)	270, 890
BssMI	GATC	5 cut(s)	162, 246, 378, 784, 825
BssT1I	CCWWGG	1 cut(s)	890
Bst2UI	CCWGG	1 cut(s)	769
Bst4CI	ACNGT	1 cut(s)	611
BstAUI	TGTACA	1 cut(s)	528
BstC8I	GCNNGC	3 cut(s)	274, 697, 724
BstDEI	CTNAG	3 cut(s)	129, 301, 450
BstDSI	CCRYGG	2 cut(s)	270, 890
BstF5I	GGATG	3 cut(s)	236, 334, 697
BstFNI	CGCG	2 cut(s)	272, 605
BstKTI	GATC	5 cut(s)	165, 249, 381, 787, 828
BstMAI	GTCTC	1 cut(s)	733
BstMBI	GATC	5 cut(s)	162, 246, 378, 784, 825
BstNI	CCWGG	1 cut(s)	769
BstSCI	CCNGG	1 cut(s)	767
BstSLI	GKGCMC	1 cut(s)	881
BstUI	CGCG	2 cut(s)	272, 605
BstV1I	GCAGC	3 cut(s)	43, 70, 92
BstV2I	GAAGAC	2 cut(s)	40, 644
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
BsuI	GTATCC	1 cut(s)	801
BsuRI	GGCC	2 cut(s)	319, 617
BtgI	CCRYGG	2 cut(s)	270, 890
BtsCI	GGATG	3 cut(s)	236, 334, 697
BtsIMutI	CAGTG	1 cut(s)	691
Cac8I	GCNNGC	3 cut(s)	274, 697, 724
Cfr10I	RCCGGY	1 cut(s)	868
Cfr13I	GGNCC	4 cut(s)	317, 615, 709, 754
Cfr42I	CCGCGG	1 cut(s)	273
CseI	GACGC	1 cut(s)	715
Csp6I	GTAC	3 cut(s)	220, 529, 580
CviAII	CATG	2 cut(s)	241, 891
CviJI	RGCY	9 cut(s)	56, 83, 287, 319, 334, 433, 574, 617, 631
CviKI_1	RGCY	9 cut(s)	56, 83, 287, 319, 334, 433, 574, 617, 631
CviQI	GTAC	3 cut(s)	220, 529, 580
DdeI	CTNAG	3 cut(s)	129, 301, 450
DpnI	GATC	5 cut(s)	164, 248, 380, 786, 827
DpnII	GATC	5 cut(s)	162, 246, 378, 784, 825
Eco130I	CCWWGG	1 cut(s)	890
Eco47I	GGWCC	2 cut(s)	709, 754
Eco57I	CTGAAG	1 cut(s)	132
EcoO109I	RGGNCCY	1 cut(s)	709
EcoRII	CCWGG	1 cut(s)	767
EcoT14I	CCWWGG	1 cut(s)	890
ErhI	CCWWGG	1 cut(s)	890
Esp3I	CGTCTC	1 cut(s)	733
FaeI	CATG	2 cut(s)	244, 894
FaqI	GGGAC	1 cut(s)	767
FatI	CATG	2 cut(s)	240, 890
FauI	CCCGC	1 cut(s)	265
FauNDI	CATATG	1 cut(s)	596
Fnu4HI	GCNGC	3 cut(s)	57, 81, 84
FokI	GGATG	3 cut(s)	243, 341, 704
Fsp4HI	GCNGC	3 cut(s)	57, 81, 84
FspBI	CTAG	1 cut(s)	335
GluI	GCNGC	3 cut(s)	57, 81, 84
GsuI	CTGGAG	2 cut(s)	574, 653
HaeIII	GGCC	2 cut(s)	319, 617
HapII	CCGG	1 cut(s)	869
HgaI	GACGC	1 cut(s)	715
Hin1II	CATG	2 cut(s)	244, 894
HinfI	GANTC	5 cut(s)	201, 266, 845, 855, 886
HpaII	CCGG	1 cut(s)	869
HphI	GGTGA	2 cut(s)	275, 835
Hpy166II	GTNNAC	2 cut(s)	508, 529
Hpy188I	TCNGA	9 cut(s)	76, 130, 260, 304, 378, 492, 781, 789, 850
Hpy188III	TCNNGA	3 cut(s)	382, 397, 478
Hpy8I	GTNNAC	2 cut(s)	508, 529
Hpy99I	CGWCG	2 cut(s)	107, 785
HpyAV	CCTTC	2 cut(s)	3, 787
HpyCH4III	ACNGT	1 cut(s)	611
HpyCH4V	TGCA	2 cut(s)	44, 840
HpyF3I	CTNAG	3 cut(s)	129, 301, 450
Hsp92II	CATG	2 cut(s)	244, 894
KspI	CCGCGG	1 cut(s)	273
Kzo9I	GATC	5 cut(s)	162, 246, 378, 784, 825
LmnI	GCTCC	1 cut(s)	311
Lsp1109I	GCAGC	3 cut(s)	43, 70, 92
LweI	GCATC	1 cut(s)	682
MaeI	CTAG	1 cut(s)	335
MaeIII	GTNAC	2 cut(s)	263, 280
MalI	GATC	5 cut(s)	164, 248, 380, 786, 827
MboI	GATC	5 cut(s)	162, 246, 378, 784, 825
MboII	GAAGA	7 cut(s)	23, 40, 60, 256, 550, 649, 802
MflI	RGATCY	1 cut(s)	162
MhlI	GDGCHC	2 cut(s)	302, 881
MluCI	AATT	2 cut(s)	109, 471
MlyI	GAGTC	2 cut(s)	260, 895
MmeI	TCCRAC	2 cut(s)	238, 804
MnlI	CCTC	8 cut(s)	188, 254, 318, 417, 445, 617, 679, 700
MslI	CAYNNNNRTG	1 cut(s)	524
MspA1I	CMGCKG	2 cut(s)	83, 272
MspI	CCGG	1 cut(s)	869
MspR9I	CCNGG	1 cut(s)	769
MvaI	CCWGG	1 cut(s)	769
MvnI	CGCG	2 cut(s)	272, 605
NcoI	CCATGG	1 cut(s)	890
NdeI	CATATG	1 cut(s)	596
NdeII	GATC	5 cut(s)	162, 246, 378, 784, 825
NlaIII	CATG	2 cut(s)	244, 894
NlaIV	GGNNCC	4 cut(s)	428, 711, 755, 773
NmuCI	GTSAC	2 cut(s)	263, 280
PfeI	GAWTC	3 cut(s)	201, 845, 855
PflMI	CCANNNNNTGG	1 cut(s)	597
PkrI	GCNGC	3 cut(s)	58, 82, 85
PleI	GAGTC	2 cut(s)	260, 894
PpsI	GAGTC	2 cut(s)	260, 894
PpuMI	RGGWCCY	1 cut(s)	709
Psp5II	RGGWCCY	1 cut(s)	709
Psp6I	CCWGG	1 cut(s)	767
PspGI	CCWGG	1 cut(s)	767
PspN4I	GGNNCC	4 cut(s)	428, 711, 755, 773
PspPI	GGNCC	4 cut(s)	317, 615, 709, 754
PspPPI	RGGWCCY	1 cut(s)	709
PsuI	RGATCY	1 cut(s)	162
PvuII	CAGCTG	1 cut(s)	83
RsaI	GTAC	3 cut(s)	221, 530, 581
RsaNI	GTAC	3 cut(s)	220, 529, 580
RseI	CAYNNNNRTG	1 cut(s)	524
SacII	CCGCGG	1 cut(s)	273
SatI	GCNGC	3 cut(s)	57, 81, 84
Sau3AI	GATC	5 cut(s)	162, 246, 378, 784, 825
Sau96I	GGNCC	4 cut(s)	317, 615, 709, 754
SchI	GAGTC	2 cut(s)	260, 895
ScrFI	CCNGG	1 cut(s)	769
SduI	GDGCHC	2 cut(s)	302, 881
SfaNI	GCATC	1 cut(s)	682
Sfr303I	CCGCGG	1 cut(s)	273
SgrBI	CCGCGG	1 cut(s)	273
SinI	GGWCC	2 cut(s)	709, 754
SmiMI	CAYNNNNRTG	1 cut(s)	524
Sse9I	AATT	2 cut(s)	109, 471
SsiI	CCGC	3 cut(s)	270, 272, 605
SspMI	CTAG	1 cut(s)	335
StyD4I	CCNGG	1 cut(s)	767
StyI	CCWWGG	1 cut(s)	890
TaaI	ACNGT	1 cut(s)	611
TaqI	TCGA	2 cut(s)	102, 180
TasI	AATT	2 cut(s)	109, 471
TatI	WGTACW	3 cut(s)	219, 528, 579
TfiI	GAWTC	3 cut(s)	201, 845, 855
TscAI	CASTG	1 cut(s)	691
TseFI	GTSAC	2 cut(s)	263, 280
TseI	GCWGC	3 cut(s)	56, 80, 83
Tsp45I	GTSAC	2 cut(s)	263, 280
TspDTI	ATGAA	3 cut(s)	40, 60, 257
TspGWI	ACGGA	1 cut(s)	417
TspRI	CASTG	1 cut(s)	691
Van91I	CCANNNNNTGG	1 cut(s)	597
VpaK11BI	GGWCC	2 cut(s)	709, 754
XcmI	CCANNNNNNNNNTGG	2 cut(s)	628, 888
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.