AT1G11915

Wall-associated receptor kinase galacturonan-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010019
Physical Location & Seq
Forward (+)
4021750 .. 4023292
1543 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G11915.1

Sequence Viewer

Length: 990 bp
ATGTCTCCACTTCACTCTTACATTATCTTCTTCTCCCTTCTCATGACCATCCTTCTTCAATCATCAACAACATCATCCCAATCAAATCTCTGCAGATCTTCTTGCGGCAACATTCCGATAAATTACCCTTTTTCCATCGACGACGGTTGTGGTAGCCCTTATTACAGACACATGCTCATTTGCTCCGACAACGATACCAAGCTCGAACTTAGAACACCATCTGGTAAATACCCTGTTAAATCTATAAGCTACTCTGATCCTCACCTTCTTGTCTCCGATCCATTCATGTGGAACTGTCAAGATCGAGACAATTTTCGACCCACTAGATCTTTTAGCATCGATTCAAGTACACACTTCACTGTCTCTCCTCAAAACGACTACTTGTTCTTCAACTGCAACACCGATAAAGTTATCGTCGAACCAAAACCGCTCTTCTGCGAAAGGTTTCCAGATAGATGTGACTCGTCCTGCGATAGTTCTAGCTATCTATGCAGACATTTGCCTGAATGTGGCTCTGCTTTGGGATCTAGGGTTTCTTGTTGTTCGTATTACCCTAAAGCGACTCAATCTCTTAGGCTCATGCTGCAGGACTGTGCGACGTATACAAGTGTGTATTGGAGGAGTACAGGTGTGGAGAATGCACCGTATGATCAGTTTCCAGAGTACGGGATAAGGGTTGATTACGAATTTCCAGTGACAATGAAGTGCCTTCTTTGCCAAGAAACGACTAAAGGTGGTGGAGTTTGTGGGTTTAATACGAGGACACGAGATTTTTTGTGCCTTTGTAAACAAGGCAATGTCACTACTTATTGCAAAGATCCAAGCCTCGTAAACCATAAACGCGTAGGAGCTATCGCAGGAACAGTGACGGCAGTTTCAGCGGCAGGAGCGATTGGCGTTGCCGGTGGAGTATATTGGTACTTGAGGAAAGTGAGAGCCAATGCTCCGGTCACTTGTGGAGTTCAAAGCAATGAGAACAGAATTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind

Protein Analysis

329

Amino Acids

36.74

Weight (kDa)

7.99

Isoelectric Point (pI)

51.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 31 - 92 1e-12 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 430
AccI GTMKAC 1 cut(s) 602
AccII CGCG 1 cut(s) 843
AciI CCGC 3 cut(s) 105, 428, 881
AclWI GGATC 4 cut(s) 251, 272, 532, 812
AcsI RAATTY 2 cut(s) 686, 981
AfaI GTAC 4 cut(s) 349, 625, 665, 920
AfiI CCNNNNNNNGG 2 cut(s) 509, 665
AflIII ACRYGT 1 cut(s) 841
AgsI TTSAA 4 cut(s) 59, 345, 391, 965
AluBI AGCT 4 cut(s) 202, 249, 483, 851
AluI AGCT 4 cut(s) 202, 249, 483, 851
Alw26I GTCTC 4 cut(s) 9, 277, 300, 367
AlwI GGATC 4 cut(s) 251, 272, 532, 812
ApeKI GCWGC 1 cut(s) 583
ApoI RAATTY 2 cut(s) 686, 981
Asp700I GAANNNNTTC 1 cut(s) 444
AsuHPI GGTGA 1 cut(s) 254
BauI CACGAG 1 cut(s) 765
BbvI GCAGC 1 cut(s) 570
BccI CCATC 3 cut(s) 56, 143, 226
BceAI ACGGC 1 cut(s) 885
BclI TGATCA 1 cut(s) 649
BcoDI GTCTC 4 cut(s) 9, 277, 300, 367
BfaI CTAG 3 cut(s) 324, 480, 528
BfmI CTRYAG 2 cut(s) 91, 584
BglII AGATCT 2 cut(s) 95, 326
BisI GCNGC 3 cut(s) 106, 584, 882
BlsI GCNGC 3 cut(s) 107, 585, 883
BmsI GCATC 1 cut(s) 345
BpuEI CTTGAG 1 cut(s) 943
Bsa29I ATCGAT 1 cut(s) 339
BsaWI WCCGGW 1 cut(s) 946
BsaXI ACNNNNNCTCC 4 cut(s) 349, 379, 613, 643
Bsc4I CCNNNNNNNGG 2 cut(s) 509, 665
Bse118I RCCGGY 1 cut(s) 902
Bse1I ACTGG 1 cut(s) 692
Bse3DI GCAATG 2 cut(s) 802, 976
BseCI ATCGAT 1 cut(s) 339
BseGI GGATG 2 cut(s) 48, 74
BseLI CCNNNNNNNGG 2 cut(s) 509, 665
BseMI GCAATG 2 cut(s) 802, 976
BseNI ACTGG 1 cut(s) 692
BseRI GAGGAG 2 cut(s) 357, 634
BseXI GCAGC 1 cut(s) 570
Bsh1236I CGCG 1 cut(s) 843
BshVI ATCGAT 1 cut(s) 339
BsiSI CCGG 2 cut(s) 903, 947
BslI CCNNNNNNNGG 2 cut(s) 509, 665
BsmAI GTCTC 4 cut(s) 9, 277, 300, 367
BsmI GAATGC 1 cut(s) 643
Bsp143I GATC 8 cut(s) 95, 256, 277, 301, 326, 524, 649, 817
BspACI CCGC 3 cut(s) 105, 428, 881
BspDI ATCGAT 1 cut(s) 339
BspFNI CGCG 1 cut(s) 843
BspHI TCATGA 1 cut(s) 42
BspMAI CTGCAG 2 cut(s) 95, 588
BspPI GGATC 4 cut(s) 251, 272, 532, 812
BspQI GCTCTTC 1 cut(s) 437
BsrBI CCGCTC 1 cut(s) 430
BsrDI GCAATG 2 cut(s) 802, 976
BsrFI RCCGGY 1 cut(s) 902
BsrI ACTGG 1 cut(s) 692
BssAI RCCGGY 1 cut(s) 902
BssMI GATC 8 cut(s) 95, 256, 277, 301, 326, 524, 649, 817
BssNAI GTATAC 1 cut(s) 603
BssSI CACGAG 1 cut(s) 765
Bst1107I GTATAC 1 cut(s) 603
Bst2BI CACGAG 1 cut(s) 765
Bst4CI ACNGT 6 cut(s) 146, 296, 361, 593, 645, 865
Bst6I CTCTTC 1 cut(s) 437
BstDEI CTNAG 2 cut(s) 209, 572
BstF5I GGATG 2 cut(s) 48, 74
BstFNI CGCG 1 cut(s) 843
BstKTI GATC 8 cut(s) 98, 259, 280, 304, 329, 527, 652, 820
BstMAI GTCTC 4 cut(s) 9, 277, 300, 367
BstMBI GATC 8 cut(s) 95, 256, 277, 301, 326, 524, 649, 817
BstMWI GCNNNNNNNGC 5 cut(s) 489, 583, 714, 878, 887
BstNSI RCATGY 1 cut(s) 175
BstSFI CTRYAG 2 cut(s) 91, 584
BstUI CGCG 1 cut(s) 843
BstV1I GCAGC 1 cut(s) 570
BstX2I RGATCY 4 cut(s) 95, 326, 524, 817
BstXI CCANNNNNNTGG 1 cut(s) 288
BstYI RGATCY 4 cut(s) 95, 326, 524, 817
BstZ17I GTATAC 1 cut(s) 603
Bsu15I ATCGAT 1 cut(s) 339
BsuTUI ATCGAT 1 cut(s) 339
BtsCI GGATG 2 cut(s) 48, 74
BtsIMutI CAGTG 3 cut(s) 357, 699, 870
CciI TCATGA 1 cut(s) 42
Cfr10I RCCGGY 1 cut(s) 902
ClaI ATCGAT 1 cut(s) 339
Csp6I GTAC 4 cut(s) 348, 624, 664, 919
CviAII CATG 4 cut(s) 43, 172, 286, 580
CviJI RGCY 9 cut(s) 156, 202, 249, 483, 513, 577, 825, 851, 938
CviKI_1 RGCY 9 cut(s) 156, 202, 249, 483, 513, 577, 825, 851, 938
CviQI GTAC 4 cut(s) 348, 624, 664, 919
DdeI CTNAG 2 cut(s) 209, 572
DpnI GATC 8 cut(s) 97, 258, 279, 303, 328, 526, 651, 819
DpnII GATC 8 cut(s) 95, 256, 277, 301, 326, 524, 649, 817
Eam1104I CTCTTC 1 cut(s) 437
EarI CTCTTC 1 cut(s) 437
FaeI CATG 4 cut(s) 46, 175, 289, 583
FatI CATG 4 cut(s) 42, 171, 285, 579
FbaI TGATCA 1 cut(s) 649
FblI GTMKAC 1 cut(s) 602
Fnu4HI GCNGC 3 cut(s) 106, 584, 882
FokI GGATG 2 cut(s) 35, 61
Fsp4HI GCNGC 3 cut(s) 106, 584, 882
FspBI CTAG 3 cut(s) 324, 480, 528
GluI GCNGC 3 cut(s) 106, 584, 882
HapII CCGG 2 cut(s) 903, 947
Hin1II CATG 4 cut(s) 46, 175, 289, 583
HinfI GANTC 3 cut(s) 341, 461, 562
HpaII CCGG 2 cut(s) 903, 947
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 4 cut(s) 350, 603, 788, 832
Hpy188I TCNGA 4 cut(s) 117, 187, 256, 277
Hpy188III TCNNGA 5 cut(s) 43, 299, 305, 449, 659
Hpy8I GTNNAC 4 cut(s) 350, 603, 788, 832
Hpy99I CGWCG 4 cut(s) 143, 146, 419, 601
HpyAV CCTTC 4 cut(s) 47, 62, 275, 719
HpyCH4III ACNGT 6 cut(s) 146, 296, 361, 593, 645, 865
HpyCH4IV ACGT 1 cut(s) 599
HpyCH4V TGCA 6 cut(s) 93, 396, 492, 586, 641, 813
HpyF10VI GCNNNNNNNGC 5 cut(s) 489, 583, 714, 878, 887
HpyF3I CTNAG 2 cut(s) 209, 572
HpySE526I ACGT 1 cut(s) 599
Hsp92II CATG 4 cut(s) 46, 175, 289, 583
Ksp22I TGATCA 1 cut(s) 649
Kzo9I GATC 8 cut(s) 95, 256, 277, 301, 326, 524, 649, 817
LguI GCTCTTC 1 cut(s) 437
LmnI GCTCC 4 cut(s) 188, 848, 887, 949
Lsp1109I GCAGC 1 cut(s) 570
LweI GCATC 1 cut(s) 345
MaeI CTAG 3 cut(s) 324, 480, 528
MaeII ACGT 1 cut(s) 599
MaeIII GTNAC 5 cut(s) 458, 694, 799, 865, 949
MalI GATC 8 cut(s) 97, 258, 279, 303, 328, 526, 651, 819
MbiI CCGCTC 1 cut(s) 430
MboI GATC 8 cut(s) 95, 256, 277, 301, 326, 524, 649, 817
MboII GAAGA 6 cut(s) 19, 22, 47, 90, 379, 424
MflI RGATCY 4 cut(s) 95, 326, 524, 817
MluCI AATT 4 cut(s) 121, 310, 686, 981
MluI ACGCGT 1 cut(s) 841
MlyI GAGTC 2 cut(s) 455, 556
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 6 cut(s) 270, 378, 612, 753, 836, 918
MroXI GAANNNNTTC 1 cut(s) 444
MseI TTAA 2 cut(s) 237, 753
MslI CAYNNNNRTG 1 cut(s) 286
MspA1I CMGCKG 1 cut(s) 881
MspI CCGG 2 cut(s) 903, 947
Mva1269I GAATGC 1 cut(s) 643
MvnI CGCG 1 cut(s) 843
MwoI GCNNNNNNNGC 5 cut(s) 489, 583, 714, 878, 887
NdeII GATC 8 cut(s) 95, 256, 277, 301, 326, 524, 649, 817
NlaIII CATG 4 cut(s) 46, 175, 289, 583
NmuCI GTSAC 5 cut(s) 458, 694, 799, 865, 949
NspI RCATGY 1 cut(s) 175
PagI TCATGA 1 cut(s) 42
PciSI GCTCTTC 1 cut(s) 437
PctI GAATGC 1 cut(s) 643
PdmI GAANNNNTTC 1 cut(s) 444
PfeI GAWTC 1 cut(s) 341
PkrI GCNGC 3 cut(s) 107, 585, 883
PleI GAGTC 2 cut(s) 455, 556
PpsI GAGTC 2 cut(s) 455, 556
PstI CTGCAG 2 cut(s) 95, 588
PsuI RGATCY 4 cut(s) 95, 326, 524, 817
RsaI GTAC 4 cut(s) 349, 625, 665, 920
RsaNI GTAC 4 cut(s) 348, 624, 664, 919
RseI CAYNNNNRTG 1 cut(s) 286
SapI GCTCTTC 1 cut(s) 437
SaqAI TTAA 2 cut(s) 237, 753
SatI GCNGC 3 cut(s) 106, 584, 882
Sau3AI GATC 8 cut(s) 95, 256, 277, 301, 326, 524, 649, 817
SchI GAGTC 2 cut(s) 455, 556
SetI ASST 9 cut(s) 204, 251, 267, 446, 485, 602, 631, 736, 853
SfaNI GCATC 1 cut(s) 345
SfcI CTRYAG 2 cut(s) 91, 584
SmiMI CAYNNNNRTG 1 cut(s) 286
SmlI CTYRAG 1 cut(s) 922
SmoI CTYRAG 1 cut(s) 922
Sse9I AATT 4 cut(s) 121, 310, 686, 981
SsiI CCGC 3 cut(s) 105, 428, 881
SspMI CTAG 3 cut(s) 324, 480, 528
TaaI ACNGT 6 cut(s) 146, 296, 361, 593, 645, 865
TaiI ACGT 1 cut(s) 602
TaqI TCGA 6 cut(s) 138, 204, 304, 316, 339, 417
TasI AATT 4 cut(s) 121, 310, 686, 981
TatI WGTACW 2 cut(s) 347, 623
TauI GCSGC 2 cut(s) 108, 884
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 2 cut(s) 237, 753
Tru9I TTAA 2 cut(s) 237, 753
TscAI CASTG 3 cut(s) 364, 699, 870
TseFI GTSAC 5 cut(s) 458, 694, 799, 865, 949
TseI GCWGC 1 cut(s) 583
Tsp45I GTSAC 5 cut(s) 458, 694, 799, 865, 949
TspDTI ATGAA 2 cut(s) 274, 716
TspRI CASTG 3 cut(s) 364, 699, 870
XapI RAATTY 2 cut(s) 686, 981
XceI RCATGY 1 cut(s) 175
XmiI GTMKAC 1 cut(s) 602
XmnI GAANNNNTTC 1 cut(s) 444
XspI CTAG 3 cut(s) 324, 480, 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.