Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010019

Physical Location & Seq

Genomic Coordinates Forward (+)

31373964 .. 31375247

Gene Structure 1284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g31750.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGTCTCCTCTAACAACTCCTATGCCGTTTGTCCTGCTCATTTTCCTTACCCTTCCGTTTGTCAGCCACACGGCACCTCAAGCCAGCCTCTGCAGAACTTCTTGCGGCAACATTCCCATCAACTACCCTTTCGGCATCGATGAGGGCTGTGGGAGTCCTTACTACAAAAACATCCTCGTATGCTCCGAATCCTCTAAACTCGAACTCCGAACACCTTCCGGAAGATACCCCGTTAAATCCATAAGCTACTCCGACCCTCACATTCTTCTCATCGATCCTTTCATGTGGAATTGCCTAGACGGTGACACATTCCGAGCCACAAGGCCTTTTAGCCTCGACACGAGCACGCATTTATCTCTCTCTCCTCAAAACGACTACCTATTCTTTAATTGTAGTGAACAAAATGTGATCATTGAGCCAAAGCCTGTGTTTTGTGAGAGGTTTCCGGAGCGATGTGACTCTTCGTGTGACAGTTCTAGTTATCTTTGCAGGCACTTGCCTGAGTGCGCCTCAGCGTTGAGGACAAGTTCTTGCTGCTCTTACTATCCCAAAGCCACTGAGTCTCTGAGGTTGATGTTGAAGTATTGTGCTACTTATACTAGTGTGTATTGGAGAAGCACTGGTGAAAATCAGCCGGATGATCAAGTTCCTGAATACGGAATTCGTGTCAATTTCGATATTCCGGTGACCACCCGTTGCCTTCAGTGTCAGGACACATTTAAAGGAGGTGGGACATGTGGATTTGACACGAAAACACTTAACTTCTGGTGCTTGTGTGATAGAGGAAATGTCACCACGTATTGTAAAGATCACAGCATTTCTCAGAATAGGAGGAATGGAGTACTTGCAGGGACGATTAGTGGAGTGACAGTTGCAGGAGCCTTTGGAGTTGGAGCAGGAATTTGGTACTTGAAGAAAATCAGAACTAAATCACCAGTAACATGTGGGGTTCAGAGCAATGAGAATAGGCTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind

Protein Analysis

326

Amino Acids

36.26

Weight (kDa)

7.74

Isoelectric Point (pI)

54.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11915
fragaria_vesca	FvH4_3g01690 FvH4_3g01690 FvH4_3g01690
malus_domestica	MD00G1202600.v1.1 MD05G1349900.v1.1 MD10G1324600.v1.1 MD10G1324700.v1.1
prunus_persica	Prupe.4G017500_v2.0.a1
pyrus_communis	pycom05g31750 pycom10g27500
rosa_chinensis	RchiOBHm_Chr5g0002541
rosa_laevigata	RLG00000031038
rosa_multiflora	Rmu_sc0010731.1_g000003
rosa_roxburghii	Rroxscaffold_1G00073360
rosa_rugosa	Rorug04G0396800
rosa_samantha	Rh5AG020200 Rh5BG022900 Rh5CG022200 Rh5DG021300
rosa_wichuraiana	Rw5G001860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	73
AccIII	TCCGGA	2 cut(s)	218, 445
AciI	CCGC	1 cut(s)	105
AclWI	GGATC	1 cut(s)	269
AcsI	RAATTY	2 cut(s)	660, 900
AcuI	CTGAAG	1 cut(s)	686
AfaI	GTAC	2 cut(s)	843, 908
AfiI	CCNNNNNNNGG	1 cut(s)	656
AflIII	ACRYGT	2 cut(s)	734, 941
AgsI	TTSAA	2 cut(s)	580, 913
AhlI	ACTAGT	1 cut(s)	599
AluBI	AGCT	1 cut(s)	246
AluI	AGCT	1 cut(s)	246
Alw21I	GWGCWC	1 cut(s)	347
Alw26I	GTCTC	2 cut(s)	9, 567
AlwI	GGATC	1 cut(s)	269
AlwNI	CAGNNNCTG	1 cut(s)	90
Aor13HI	TCCGGA	2 cut(s)	218, 445
AoxI	GGCC	1 cut(s)	323
ApeKI	GCWGC	1 cut(s)	534
ApoI	RAATTY	2 cut(s)	660, 900
Asp700I	GAANNNNTTC	1 cut(s)	214
AspLEI	GCGC	1 cut(s)	509
AsuHPI	GGTGA	5 cut(s)	314, 635, 697, 784, 924
BanI	GGYRCC	1 cut(s)	73
BauI	CACGAG	1 cut(s)	340
Bbv12I	GWGCWC	1 cut(s)	347
BbvCI	CCTCAGC	1 cut(s)	511
BbvI	GCAGC	1 cut(s)	521
BccI	CCATC	1 cut(s)	125
BceAI	ACGGC	2 cut(s)	10, 87
BclI	TGATCA	2 cut(s)	408, 640
BcoDI	GTCTC	2 cut(s)	9, 567
BcuI	ACTAGT	1 cut(s)	599
BfaI	CTAG	3 cut(s)	296, 477, 600
BfmI	CTRYAG	1 cut(s)	91
BisI	GCNGC	2 cut(s)	106, 535
BlsI	GCNGC	2 cut(s)	107, 536
BmcAI	AGTACT	1 cut(s)	843
BmiI	GGNNCC	2 cut(s)	75, 880
BmsI	GCATC	1 cut(s)	144
BplI	GAGNNNNNCTC	2 cut(s)	494, 526
Bpu10I	CCTNAGC	1 cut(s)	511
BpuEI	CTTGAG	1 cut(s)	63
Bsa29I	ATCGAT	2 cut(s)	138, 273
BsaAI	YACGTR	1 cut(s)	798
BsaWI	WCCGGW	3 cut(s)	218, 445, 682
BsaXI	ACNNNNNCTCC	4 cut(s)	189, 219, 855, 885
Bsc4I	CCNNNNNNNGG	1 cut(s)	656
Bse1I	ACTGG	2 cut(s)	625, 935
Bse3DI	GCAATG	1 cut(s)	964
BseAI	TCCGGA	2 cut(s)	218, 445
BseCI	ATCGAT	2 cut(s)	138, 273
BseGI	GGATG	2 cut(s)	171, 643
BseLI	CCNNNNNNNGG	1 cut(s)	656
BseMI	GCAATG	1 cut(s)	964
BseMII	CTCAG	5 cut(s)	492, 525, 549, 557, 836
BseNI	ACTGG	2 cut(s)	625, 935
BseRI	GAGGAG	1 cut(s)	354
BseXI	GCAGC	1 cut(s)	521
BshFI	GGCC	1 cut(s)	325
BshNI	GGYRCC	1 cut(s)	73
BshVI	ATCGAT	2 cut(s)	138, 273
BsiHKAI	GWGCWC	1 cut(s)	347
BsiSI	CCGG	4 cut(s)	219, 446, 635, 683
BslFI	GGGAC	2 cut(s)	745, 865
BslI	CCNNNNNNNGG	1 cut(s)	656
BsmAI	GTCTC	2 cut(s)	9, 567
BsmFI	GGGAC	2 cut(s)	745, 865
BsnI	GGCC	1 cut(s)	325
Bsp1286I	GDGCHC	1 cut(s)	347
Bsp13I	TCCGGA	2 cut(s)	218, 445
Bsp143I	GATC	4 cut(s)	274, 408, 640, 808
BspACI	CCGC	1 cut(s)	105
BspANI	GGCC	1 cut(s)	325
BspCNI	CTCAG	5 cut(s)	493, 524, 550, 558, 835
BspDI	ATCGAT	2 cut(s)	138, 273
BspEI	TCCGGA	2 cut(s)	218, 445
BspLI	GGNNCC	2 cut(s)	75, 880
BspMAI	CTGCAG	1 cut(s)	95
BspPI	GGATC	1 cut(s)	269
BspT107I	GGYRCC	1 cut(s)	73
BsrDI	GCAATG	1 cut(s)	964
BsrI	ACTGG	2 cut(s)	625, 935
BssMI	GATC	4 cut(s)	274, 408, 640, 808
BssSI	CACGAG	1 cut(s)	340
Bst2BI	CACGAG	1 cut(s)	340
Bst4CI	ACNGT	3 cut(s)	302, 473, 871
Bst6I	CTCTTC	1 cut(s)	466
BstBAI	YACGTR	1 cut(s)	798
BstC8I	GCNNGC	3 cut(s)	85, 347, 491
BstDEI	CTNAG	5 cut(s)	501, 511, 558, 566, 822
BstEII	GGTNACC	1 cut(s)	685
BstF5I	GGATG	2 cut(s)	171, 643
BstHHI	GCGC	1 cut(s)	509
BstKTI	GATC	4 cut(s)	277, 411, 643, 811
BstMAI	GTCTC	2 cut(s)	9, 567
BstMBI	GATC	4 cut(s)	274, 408, 640, 808
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNSI	RCATGY	2 cut(s)	738, 945
BstPI	GGTNACC	1 cut(s)	685
BstSFI	CTRYAG	1 cut(s)	91
BstV1I	GCAGC	1 cut(s)	521
Bsu15I	ATCGAT	2 cut(s)	138, 273
BsuRI	GGCC	1 cut(s)	325
BsuTUI	ATCGAT	2 cut(s)	138, 273
BtgZI	GCGATG	1 cut(s)	466
BtsCI	GGATG	2 cut(s)	171, 643
BtsIMutI	CAGTG	3 cut(s)	555, 618, 710
Cac8I	GCNNGC	3 cut(s)	85, 347, 491
CaiI	CAGNNNCTG	1 cut(s)	90
CfoI	GCGC	1 cut(s)	509
ClaI	ATCGAT	2 cut(s)	138, 273
Csp6I	GTAC	2 cut(s)	842, 907
CviAII	CATG	3 cut(s)	283, 735, 942
CviQI	GTAC	2 cut(s)	842, 907
DdeI	CTNAG	5 cut(s)	501, 511, 558, 566, 822
DpnI	GATC	4 cut(s)	276, 410, 642, 810
DpnII	GATC	4 cut(s)	274, 408, 640, 808
DraI	TTTAAA	1 cut(s)	721
Eam1104I	CTCTTC	1 cut(s)	466
EarI	CTCTTC	1 cut(s)	466
Eco147I	AGGCCT	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	686
Eco91I	GGTNACC	1 cut(s)	685
EcoO65I	GGTNACC	1 cut(s)	685
EcoRI	GAATTC	1 cut(s)	660
FaeI	CATG	3 cut(s)	286, 738, 945
FaiI	YATR	7 cut(s)	23, 181, 242, 284, 597, 736, 943
FaqI	GGGAC	2 cut(s)	745, 865
FatI	CATG	3 cut(s)	282, 734, 941
FbaI	TGATCA	2 cut(s)	408, 640
Fnu4HI	GCNGC	2 cut(s)	106, 535
FokI	GGATG	2 cut(s)	158, 650
Fsp4HI	GCNGC	2 cut(s)	106, 535
FspBI	CTAG	3 cut(s)	296, 477, 600
GlaI	GCGC	1 cut(s)	508
GluI	GCNGC	2 cut(s)	106, 535
HaeIII	GGCC	1 cut(s)	325
HapII	CCGG	4 cut(s)	219, 446, 635, 683
HhaI	GCGC	1 cut(s)	509
Hin1II	CATG	3 cut(s)	286, 738, 945
Hin6I	GCGC	1 cut(s)	507
HinP1I	GCGC	1 cut(s)	507
HinfI	GANTC	4 cut(s)	154, 188, 458, 560
HpaII	CCGG	4 cut(s)	219, 446, 635, 683
HphI	GGTGA	5 cut(s)	314, 635, 697, 784, 924
Hpy166II	GTNNAC	1 cut(s)	398
Hpy188I	TCNGA	8 cut(s)	187, 209, 253, 314, 567, 825, 923, 954
Hpy188III	TCNNGA	4 cut(s)	219, 446, 650, 710
Hpy8I	GTNNAC	1 cut(s)	398
HpyAV	CCTTC	3 cut(s)	62, 225, 710
HpyCH4III	ACNGT	3 cut(s)	302, 473, 871
HpyCH4IV	ACGT	1 cut(s)	797
HpyCH4V	TGCA	4 cut(s)	93, 489, 848, 875
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	5 cut(s)	501, 511, 558, 566, 822
HpySE526I	ACGT	1 cut(s)	797
Hsp92II	CATG	3 cut(s)	286, 738, 945
HspAI	GCGC	1 cut(s)	507
Kpn2I	TCCGGA	2 cut(s)	218, 445
Ksp22I	TGATCA	2 cut(s)	408, 640
Kzo9I	GATC	4 cut(s)	274, 408, 640, 808
LmnI	GCTCC	4 cut(s)	188, 448, 878, 893
Lsp1109I	GCAGC	1 cut(s)	521
LweI	GCATC	1 cut(s)	144
MaeI	CTAG	3 cut(s)	296, 477, 600
MaeII	ACGT	1 cut(s)	797
MaeIII	GTNAC	7 cut(s)	302, 455, 467, 685, 790, 865, 937
MalI	GATC	4 cut(s)	276, 410, 642, 810
MboI	GATC	4 cut(s)	274, 408, 640, 808
MboII	GAAGA	4 cut(s)	234, 257, 453, 925
MhlI	GDGCHC	1 cut(s)	347
MluCI	AATT	5 cut(s)	289, 388, 660, 670, 900
MlyI	GAGTC	3 cut(s)	163, 452, 569
MmeI	TCCRAC	2 cut(s)	276, 871
MroI	TCCGGA	2 cut(s)	218, 445
MroXI	GAANNNNTTC	1 cut(s)	214
MseI	TTAA	4 cut(s)	234, 387, 720, 759
MspI	CCGG	4 cut(s)	219, 446, 635, 683
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	4 cut(s)	274, 408, 640, 808
NlaIII	CATG	3 cut(s)	286, 738, 945
NlaIV	GGNNCC	2 cut(s)	75, 880
NmuCI	GTSAC	6 cut(s)	302, 455, 467, 685, 790, 865
NspI	RCATGY	2 cut(s)	738, 945
PceI	AGGCCT	1 cut(s)	325
PciI	ACATGT	2 cut(s)	734, 941
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PdmI	GAANNNNTTC	1 cut(s)	214
PfeI	GAWTC	1 cut(s)	188
PkrI	GCNGC	2 cut(s)	107, 536
PleI	GAGTC	3 cut(s)	162, 452, 568
PpsI	GAGTC	3 cut(s)	162, 452, 568
Ppu21I	YACGTR	1 cut(s)	798
PscI	ACATGT	2 cut(s)	734, 941
PspEI	GGTNACC	1 cut(s)	685
PspN4I	GGNNCC	2 cut(s)	75, 880
PstI	CTGCAG	1 cut(s)	95
PstNI	CAGNNNCTG	1 cut(s)	90
RsaI	GTAC	2 cut(s)	843, 908
RsaNI	GTAC	2 cut(s)	842, 907
SaqAI	TTAA	4 cut(s)	234, 387, 720, 759
SatI	GCNGC	2 cut(s)	106, 535
Sau3AI	GATC	4 cut(s)	274, 408, 640, 808
ScaI	AGTACT	1 cut(s)	843
SchI	GAGTC	3 cut(s)	163, 452, 569
SduI	GDGCHC	1 cut(s)	347
SetI	ASST	8 cut(s)	79, 217, 248, 381, 443, 572, 730, 800
SfaNI	GCATC	1 cut(s)	144
SfcI	CTRYAG	1 cut(s)	91
SmlI	CTYRAG	1 cut(s)	78
SmoI	CTYRAG	1 cut(s)	78
SpeI	ACTAGT	1 cut(s)	599
Sse9I	AATT	5 cut(s)	289, 388, 660, 670, 900
SseBI	AGGCCT	1 cut(s)	325
SsiI	CCGC	1 cut(s)	105
SspMI	CTAG	3 cut(s)	296, 477, 600
StuI	AGGCCT	1 cut(s)	325
TaaI	ACNGT	3 cut(s)	302, 473, 871
TaiI	ACGT	1 cut(s)	800
TaqI	TCGA	5 cut(s)	138, 201, 273, 336, 675
TasI	AATT	5 cut(s)	289, 388, 660, 670, 900
TatI	WGTACW	1 cut(s)	841
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	4 cut(s)	234, 387, 720, 759
Tru9I	TTAA	4 cut(s)	234, 387, 720, 759
TscAI	CASTG	3 cut(s)	562, 625, 710
TseFI	GTSAC	6 cut(s)	302, 455, 467, 685, 790, 865
TseI	GCWGC	1 cut(s)	534
Tsp45I	GTSAC	6 cut(s)	302, 455, 467, 685, 790, 865
TspDTI	ATGAA	1 cut(s)	271
TspGWI	ACGGA	2 cut(s)	45, 672
TspRI	CASTG	3 cut(s)	562, 625, 710
XapI	RAATTY	2 cut(s)	660, 900
XceI	RCATGY	2 cut(s)	738, 945
XmnI	GAANNNNTTC	1 cut(s)	214
XspI	CTAG	3 cut(s)	296, 477, 600
ZrmI	AGTACT	1 cut(s)	843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.