Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010731.1

Orthogroup ID

OG0010019

Physical Location & Seq

Genomic Coordinates Forward (+)

14621 .. 15770

Gene Structure 1150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010731.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

atggcttctcccttcacctacaaattcattttactcatttcctttcaatttctcagcctcacagcagctcaagccagcccatgcagacctttttgtggtagcattccgattaactaccctttcggcattgatgaaggctgtggcagcccttattacagtcaccttcttgtctgctctgagccgggtaaacttgagctccgaacaccttctggcagataccctgtcaagagcataagctactccgatcctcacattcttgtcaccgatcctttcatgtggaattgcctagacggtgacaattttcgaccaactaggcctttcagccttgacactagtacacatttgtcactctcttctcaaaatgactaccttttcttcaattgtagtgaagaaaatgtgatcgttcagccaaagcctatgttctgtgaaaggtaccccgaaaagtgtgactcatcatgtgacagttctagttatctttgcaggcacttacctgagtgtgcctcagcattgaaaagaagtacttgctgttcttactatcccaaagccactgaatccctaaggttgatgttgaagtactgtgctagttatactagtgtgcattggagaaacaccggtgaaacacagcctgatgatcaagtccccgaatatgggattcgggtggattttgatattccagttaccactcgttgccttcactgccaggacacatccaaaggtggtggaacttgtggattcgacaccaaaacacagagtttcttgtgcctatgtgagagaggaaatgtgactacttattgtaatgatgatagcatttctaagcatacgaggaacggagtaattgcagggacagttgctggtgtttcagtagcaggagcctttggaattggggcaggaatttggtacttcaggaaaattagagctaaagcaccagtcacatgtggggttcaaagcaatgagaataggcttttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind

Protein Analysis

322

Amino Acids

35.8

Weight (kDa)

6.97

Isoelectric Point (pI)

42.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11915
fragaria_vesca	FvH4_3g01690 FvH4_3g01690 FvH4_3g01690
malus_domestica	MD00G1202600.v1.1 MD05G1349900.v1.1 MD10G1324600.v1.1 MD10G1324700.v1.1
prunus_persica	Prupe.4G017500_v2.0.a1
pyrus_communis	pycom05g31750 pycom10g27500
rosa_chinensis	RchiOBHm_Chr5g0002541
rosa_laevigata	RLG00000031038
rosa_multiflora	Rmu_sc0010731.1_g000003
rosa_roxburghii	Rroxscaffold_1G00073360
rosa_rugosa	Rorug04G0396800
rosa_samantha	Rh5AG020200 Rh5BG022900 Rh5CG022200 Rh5DG021300
rosa_wichuraiana	Rw5G001860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	432
AccB1I	GGYRCC	1 cut(s)	432
AclWI	GGATC	2 cut(s)	239, 260
AcsI	RAATTY	2 cut(s)	23, 891
AcuI	CTGAAG	1 cut(s)	886
AfaI	GTAC	5 cut(s)	337, 434, 520, 575, 899
AfiI	CCNNNNNNNGG	3 cut(s)	95, 647, 648
AflIII	ACRYGT	1 cut(s)	932
AgeI	ACCGGT	1 cut(s)	611
AgsI	TTSAA	5 cut(s)	47, 379, 511, 571, 944
AhlI	ACTAGT	2 cut(s)	332, 590
AjnI	CCWGG	1 cut(s)	699
AluBI	AGCT	4 cut(s)	68, 196, 237, 917
AluI	AGCT	4 cut(s)	68, 196, 237, 917
Alw21I	GWGCWC	1 cut(s)	198
AlwI	GGATC	2 cut(s)	239, 260
AlwNI	CAGNNNCTG	1 cut(s)	851
AoxI	GGCC	1 cut(s)	314
ApeKI	GCWGC	2 cut(s)	65, 144
ApoI	RAATTY	2 cut(s)	23, 891
AsiGI	ACCGGT	1 cut(s)	611
Asp700I	GAANNNNTTC	1 cut(s)	205
Asp718I	GGTACC	1 cut(s)	432
AsuC2I	CCSGG	1 cut(s)	183
AsuHPI	GGTGA	5 cut(s)	7, 152, 253, 305, 626
AxyI	CCTNAGG	1 cut(s)	557
BanI	GGYRCC	1 cut(s)	432
BanII	GRGCYC	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	198
BbvCI	CCTCAGC	1 cut(s)	502
BbvI	GCAGC	2 cut(s)	77, 156
BciT130I	CCWGG	1 cut(s)	701
BclI	TGATCA	1 cut(s)	631
BcnI	CCSGG	1 cut(s)	183
BcuI	ACTAGT	2 cut(s)	332, 590
BfaI	CTAG	6 cut(s)	287, 312, 333, 468, 582, 591
BisI	GCNGC	2 cut(s)	66, 145
BlsI	GCNGC	2 cut(s)	67, 146
BmcAI	AGTACT	2 cut(s)	520, 575
Bme1390I	CCNGG	2 cut(s)	183, 701
BmiI	GGNNCC	2 cut(s)	434, 871
BmrFI	CCNGG	2 cut(s)	183, 701
BplI	GAGNNNNNCTC	2 cut(s)	485, 517
Bpu10I	CCTNAGC	1 cut(s)	502
BpuEI	CTTGAG	2 cut(s)	54, 212
BpuMI	CCSGG	1 cut(s)	183
BsaWI	WCCGGW	1 cut(s)	611
BsaXI	ACNNNNNCTCC	2 cut(s)	180, 210
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 647, 648
Bse118I	RCCGGY	1 cut(s)	611
Bse1I	ACTGG	2 cut(s)	674, 926
Bse21I	CCTNAGG	1 cut(s)	557
Bse3DI	GCAATG	1 cut(s)	955
BseBI	CCWGG	1 cut(s)	701
BseGI	GGATG	1 cut(s)	707
BseLI	CCNNNNNNNGG	3 cut(s)	95, 647, 648
BseMI	GCAATG	1 cut(s)	955
BseMII	CTCAG	4 cut(s)	67, 168, 483, 516
BseNI	ACTGG	2 cut(s)	674, 926
BseXI	GCAGC	2 cut(s)	77, 156
BshFI	GGCC	1 cut(s)	316
BshNI	GGYRCC	1 cut(s)	432
BshTI	ACCGGT	1 cut(s)	611
BsiHKAI	GWGCWC	1 cut(s)	198
BsiSI	CCGG	2 cut(s)	182, 612
BslFI	GGGAC	2 cut(s)	623, 856
BslI	CCNNNNNNNGG	3 cut(s)	95, 647, 648
BsmFI	GGGAC	2 cut(s)	623, 856
BsmI	GAATGC	1 cut(s)	102
BsnI	GGCC	1 cut(s)	316
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp143I	GATC	4 cut(s)	244, 265, 399, 631
BspANI	GGCC	1 cut(s)	316
BspCNI	CTCAG	4 cut(s)	66, 169, 484, 515
BspLI	GGNNCC	2 cut(s)	434, 871
BspPI	GGATC	2 cut(s)	239, 260
BspT107I	GGYRCC	1 cut(s)	432
BsrDI	GCAATG	1 cut(s)	955
BsrFI	RCCGGY	1 cut(s)	611
BsrI	ACTGG	2 cut(s)	674, 926
BssAI	RCCGGY	1 cut(s)	611
BssMI	GATC	4 cut(s)	244, 265, 399, 631
Bst2UI	CCWGG	1 cut(s)	701
Bst4CI	ACNGT	5 cut(s)	158, 293, 464, 578, 847
Bst6I	CTCTTC	1 cut(s)	358
BstC8I	GCNNGC	2 cut(s)	76, 482
BstDEI	CTNAG	6 cut(s)	53, 177, 492, 502, 557, 813
BstF5I	GGATG	1 cut(s)	707
BstKTI	GATC	4 cut(s)	247, 268, 402, 634
BstMBI	GATC	4 cut(s)	244, 265, 399, 631
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 144, 696
BstNI	CCWGG	1 cut(s)	701
BstNSI	RCATGY	1 cut(s)	936
BstSCI	CCNGG	2 cut(s)	181, 699
BstV1I	GCAGC	2 cut(s)	77, 156
Bsu36I	CCTNAGG	1 cut(s)	557
BsuRI	GGCC	1 cut(s)	316
BtsCI	GGATG	1 cut(s)	707
BtsI	GCAGTG	1 cut(s)	694
BtsIMutI	CAGTG	2 cut(s)	546, 694
Cac8I	GCNNGC	2 cut(s)	76, 482
CaiI	CAGNNNCTG	1 cut(s)	851
Cfr10I	RCCGGY	1 cut(s)	611
Csp6I	GTAC	5 cut(s)	336, 433, 519, 574, 898
CspAI	ACCGGT	1 cut(s)	611
CspCI	CAANNNNNGTGG	2 cut(s)	700, 735
CviAII	CATG	4 cut(s)	81, 274, 456, 933
CviQI	GTAC	5 cut(s)	336, 433, 519, 574, 898
DdeI	CTNAG	6 cut(s)	53, 177, 492, 502, 557, 813
DpnI	GATC	4 cut(s)	246, 267, 401, 633
DpnII	GATC	4 cut(s)	244, 265, 399, 631
Eam1104I	CTCTTC	1 cut(s)	358
EarI	CTCTTC	1 cut(s)	358
Ecl136II	GAGCTC	1 cut(s)	196
Eco147I	AGGCCT	1 cut(s)	316
Eco24I	GRGCYC	1 cut(s)	198
Eco53kI	GAGCTC	1 cut(s)	196
Eco57I	CTGAAG	1 cut(s)	886
Eco81I	CCTNAGG	1 cut(s)	557
EcoICRI	GAGCTC	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	699
EcoT38I	GRGCYC	1 cut(s)	198
FaeI	CATG	4 cut(s)	84, 277, 459, 936
FalI	AAGNNNNNCTT	2 cut(s)	505, 537
FaqI	GGGAC	2 cut(s)	623, 856
FatI	CATG	4 cut(s)	80, 273, 455, 932
FbaI	TGATCA	1 cut(s)	631
Fnu4HI	GCNGC	2 cut(s)	66, 145
FokI	GGATG	1 cut(s)	694
FriOI	GRGCYC	1 cut(s)	198
Fsp4HI	GCNGC	2 cut(s)	66, 145
FspBI	CTAG	6 cut(s)	287, 312, 333, 468, 582, 591
GluI	GCNGC	2 cut(s)	66, 145
HaeIII	GGCC	1 cut(s)	316
HapII	CCGG	2 cut(s)	182, 612
Hin1II	CATG	4 cut(s)	84, 277, 459, 936
HinfI	GANTC	4 cut(s)	449, 551, 652, 732
HpaII	CCGG	2 cut(s)	182, 612
HphI	GGTGA	5 cut(s)	7, 152, 253, 305, 626
Hpy166II	GTNNAC	2 cut(s)	188, 338
Hpy188I	TCNGA	4 cut(s)	108, 178, 200, 244
Hpy188III	TCNNGA	2 cut(s)	226, 904
Hpy8I	GTNNAC	2 cut(s)	188, 338
HpyAV	CCTTC	5 cut(s)	22, 128, 173, 216, 701
HpyCH4III	ACNGT	5 cut(s)	158, 293, 464, 578, 847
HpyCH4V	TGCA	4 cut(s)	84, 480, 598, 839
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 144, 696
HpyF3I	CTNAG	6 cut(s)	53, 177, 492, 502, 557, 813
Hsp92II	CATG	4 cut(s)	84, 277, 459, 936
KpnI	GGTACC	1 cut(s)	436
Ksp22I	TGATCA	1 cut(s)	631
Kzo9I	GATC	4 cut(s)	244, 265, 399, 631
LmnI	GCTCC	2 cut(s)	201, 869
Lsp1109I	GCAGC	2 cut(s)	77, 156
MaeI	CTAG	6 cut(s)	287, 312, 333, 468, 582, 591
MaeIII	GTNAC	9 cut(s)	158, 259, 293, 345, 446, 458, 676, 781, 928
MalI	GATC	4 cut(s)	246, 267, 401, 633
MboI	GATC	4 cut(s)	244, 265, 399, 631
MboII	GAAGA	3 cut(s)	345, 367, 401
MfeI	CAATTG	1 cut(s)	379
MhlI	GDGCHC	1 cut(s)	198
MluCI	AATT	9 cut(s)	23, 47, 280, 298, 379, 834, 879, 891, 909
MlyI	GAGTC	1 cut(s)	443
MnlI	CCTC	5 cut(s)	68, 258, 511, 767, 816
MroXI	GAANNNNTTC	1 cut(s)	205
MseI	TTAA	1 cut(s)	111
MspI	CCGG	2 cut(s)	182, 612
MspR9I	CCNGG	2 cut(s)	183, 701
MunI	CAATTG	1 cut(s)	379
Mva1269I	GAATGC	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	701
MwoI	GCNNNNNNNGC	3 cut(s)	71, 144, 696
NciI	CCSGG	1 cut(s)	183
NdeII	GATC	4 cut(s)	244, 265, 399, 631
NlaIII	CATG	4 cut(s)	84, 277, 459, 936
NlaIV	GGNNCC	2 cut(s)	434, 871
NmuCI	GTSAC	8 cut(s)	158, 259, 293, 345, 446, 458, 781, 928
NspI	RCATGY	1 cut(s)	936
PceI	AGGCCT	1 cut(s)	316
PciI	ACATGT	1 cut(s)	932
PctI	GAATGC	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	205
PfeI	GAWTC	3 cut(s)	551, 652, 732
PinAI	ACCGGT	1 cut(s)	611
PkrI	GCNGC	2 cut(s)	67, 146
PleI	GAGTC	1 cut(s)	443
PpsI	GAGTC	1 cut(s)	443
PscI	ACATGT	1 cut(s)	932
Psp124BI	GAGCTC	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	699
PspGI	CCWGG	1 cut(s)	699
PspN4I	GGNNCC	2 cut(s)	434, 871
PsrI	GAACNNNNNNTAC	2 cut(s)	511, 543
PstNI	CAGNNNCTG	1 cut(s)	851
RsaI	GTAC	5 cut(s)	337, 434, 520, 575, 899
RsaNI	GTAC	5 cut(s)	336, 433, 519, 574, 898
SacI	GAGCTC	1 cut(s)	198
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	2 cut(s)	66, 145
Sau3AI	GATC	4 cut(s)	244, 265, 399, 631
ScaI	AGTACT	2 cut(s)	520, 575
SchI	GAGTC	1 cut(s)	443
ScrFI	CCNGG	2 cut(s)	183, 701
SduI	GDGCHC	1 cut(s)	198
SgrAI	CRCCGGYG	1 cut(s)	611
SmlI	CTYRAG	2 cut(s)	69, 191
SmoI	CTYRAG	2 cut(s)	69, 191
SpeI	ACTAGT	2 cut(s)	332, 590
Sse9I	AATT	9 cut(s)	23, 47, 280, 298, 379, 834, 879, 891, 909
SseBI	AGGCCT	1 cut(s)	316
SspMI	CTAG	6 cut(s)	287, 312, 333, 468, 582, 591
SstI	GAGCTC	1 cut(s)	198
StuI	AGGCCT	1 cut(s)	316
StyD4I	CCNGG	2 cut(s)	181, 699
TaaI	ACNGT	5 cut(s)	158, 293, 464, 578, 847
TaqI	TCGA	2 cut(s)	304, 735
TasI	AATT	9 cut(s)	23, 47, 280, 298, 379, 834, 879, 891, 909
TatI	WGTACW	3 cut(s)	335, 518, 573
TfiI	GAWTC	3 cut(s)	551, 652, 732
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	2 cut(s)	553, 701
TseFI	GTSAC	8 cut(s)	158, 259, 293, 345, 446, 458, 781, 928
TseI	GCWGC	2 cut(s)	65, 144
Tsp45I	GTSAC	8 cut(s)	158, 259, 293, 345, 446, 458, 781, 928
TspDTI	ATGAA	3 cut(s)	16, 147, 262
TspGWI	ACGGA	1 cut(s)	843
TspRI	CASTG	2 cut(s)	553, 701
XapI	RAATTY	2 cut(s)	23, 891
XceI	RCATGY	1 cut(s)	936
XmnI	GAANNNNTTC	1 cut(s)	205
XspI	CTAG	6 cut(s)	287, 312, 333, 468, 582, 591
ZrmI	AGTACT	2 cut(s)	520, 575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.