FvH4_3g01690

Wall-associated receptor kinase galacturonan-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0010019
Physical Location & Seq
Reverse (-)
868323 .. 869998
1676 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g01690.t3

Sequence Viewer

Length: 978 bp
ATGTCTCTAATGGCTTCTCTCTTCACTTTCAATTTCATTTTTTTCATTGCCCTTCAACTTCTCAGCCTCACAGCAGCTCAAGCCAGTCAATGCAGACCTTTTTGCGGCAACATTCCGATTAACTACCCTTTCGGCATTGATGAAGGCTGTGGCAGCCCTTATTACAGTCACCTTCTCGTCTGCTCCGAGCCGGGTAAACTTGAGCTTCGAACACCTTCTGGCAGATACCCTGTCAAGAGCATAAGCTACTCCGATCCTCACATTCTTGTCACTGATCCTTTCATGTGGAACTGCCTAGACGGTGACAGTTTTCGACCAACTAGGCCTTTTAGTCTTGACACCAGTACACATTTGTCACTCTCTTCTCAAAATGACTACCTTTTCTTCAATTGTAGTGAAGAAAATGTGATCGTTCAGCCAAAGCCTATGTTCTGTGAAAGGTACCCGGAAAAGTGTGACTCATCATGTGACAGTTCTAGTTATCTTTGCAGGCACTTACCGGAGTGTGCCTCAGCATTGACAAGAAGTACTTGCTGTTCTTACTATCCCAAAGCCACTGAATCCCTAAGGTTGATGTTGAAGTACTGCGCTAGTTATACTAGTGTGCATTGGAGAAACACCGGTGAGACACAGCCTGATGATCAAGTCCCAGAATATGGCATTCGAGTGGATTTTGATATTCCGGTTACCACACGTTGCCTTCAGTGCCAGGACACATCCAAAGGCGGTGGAACATGTGGATTCGACACCAAAACACAGAGTTTCTTGTGCTTATGTGAGAAAGGAAACGCGACTACTTATTGTAATGATGATAGCATTTCTAAGCATACGAGGAAAGGTGTGATTGCAGGGGCAGTTTCTGGTGTTTCAGTAGCAGGAGCCTTTGGAATTGGGGCAGGAATTTGGTACTACAGGAAAGTTAGAGCTAAAGCACCAGTTACGTGTGGGGTTCAAAGCAATGAGAACAGGATTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind

Protein Analysis

326

Amino Acids

36.04

Weight (kDa)

6.58

Isoelectric Point (pI)

43.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 31 - 92 4.8e-11 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 441
AccB1I GGYRCC 1 cut(s) 441
AccB7I CCANNNNNTGG 1 cut(s) 656
AccII CGCG 1 cut(s) 791
AciI CCGC 2 cut(s) 105, 726
AclWI GGATC 2 cut(s) 248, 269
AcsI RAATTY 1 cut(s) 900
AcuI CTGAAG 1 cut(s) 686
AfaI GTAC 5 cut(s) 346, 443, 529, 584, 908
AfiI CCNNNNNNNGG 2 cut(s) 104, 656
AflIII ACRYGT 3 cut(s) 692, 734, 941
AgeI ACCGGT 1 cut(s) 620
AgsI TTSAA 5 cut(s) 31, 56, 388, 580, 953
AhlI ACTAGT 1 cut(s) 599
AjnI CCWGG 1 cut(s) 708
AluBI AGCT 4 cut(s) 77, 205, 246, 926
AluI AGCT 4 cut(s) 77, 205, 246, 926
Alw26I GTCTC 2 cut(s) 9, 620
AlwI GGATC 2 cut(s) 248, 269
AlwNI CAGNNNCTG 1 cut(s) 860
AoxI GGCC 1 cut(s) 323
ApeKI GCWGC 2 cut(s) 74, 153
ApoI RAATTY 1 cut(s) 900
AsiGI ACCGGT 1 cut(s) 620
Asp700I GAANNNNTTC 1 cut(s) 214
Asp718I GGTACC 1 cut(s) 441
AspLEI GCGC 1 cut(s) 590
AsuC2I CCSGG 2 cut(s) 192, 446
AsuHPI GGTGA 3 cut(s) 161, 314, 635
AsuII TTCGAA 1 cut(s) 208
AxyI CCTNAGG 1 cut(s) 566
BanI GGYRCC 1 cut(s) 441
BbvCI CCTCAGC 1 cut(s) 511
BbvI GCAGC 2 cut(s) 86, 165
BciT130I CCWGG 1 cut(s) 710
BclI TGATCA 1 cut(s) 640
BcnI CCSGG 2 cut(s) 192, 446
BcoDI GTCTC 2 cut(s) 9, 620
BcuI ACTAGT 1 cut(s) 599
BfaI CTAG 5 cut(s) 296, 321, 477, 591, 600
BfmI CTRYAG 1 cut(s) 910
BisI GCNGC 3 cut(s) 75, 106, 154
BlsI GCNGC 3 cut(s) 76, 107, 155
BmcAI AGTACT 2 cut(s) 529, 584
Bme1390I CCNGG 3 cut(s) 192, 446, 710
BmiI GGNNCC 2 cut(s) 443, 880
BmrFI CCNGG 3 cut(s) 192, 446, 710
BplI GAGNNNNNCTC 2 cut(s) 494, 526
Bpu10I CCTNAGC 1 cut(s) 511
Bpu14I TTCGAA 1 cut(s) 208
BpuEI CTTGAG 2 cut(s) 63, 221
BpuMI CCSGG 2 cut(s) 192, 446
BsaAI YACGTR 1 cut(s) 942
BsaWI WCCGGW 3 cut(s) 499, 620, 682
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 656
Bse118I RCCGGY 1 cut(s) 620
Bse1I ACTGG 3 cut(s) 84, 342, 935
Bse21I CCTNAGG 1 cut(s) 566
Bse3DI GCAATG 2 cut(s) 45, 964
BseBI CCWGG 1 cut(s) 710
BseGI GGATG 1 cut(s) 716
BseLI CCNNNNNNNGG 2 cut(s) 104, 656
BseMI GCAATG 2 cut(s) 45, 964
BseMII CTCAG 2 cut(s) 76, 525
BseNI ACTGG 3 cut(s) 84, 342, 935
BseXI GCAGC 2 cut(s) 86, 165
Bsh1236I CGCG 1 cut(s) 791
BshFI GGCC 1 cut(s) 325
BshNI GGYRCC 1 cut(s) 441
BshTI ACCGGT 1 cut(s) 620
BsiSI CCGG 5 cut(s) 191, 446, 500, 621, 683
BslFI GGGAC 1 cut(s) 632
BslI CCNNNNNNNGG 2 cut(s) 104, 656
BsmAI GTCTC 2 cut(s) 9, 620
BsmFI GGGAC 1 cut(s) 632
BsmI GAATGC 1 cut(s) 660
BsnI GGCC 1 cut(s) 325
Bsp119I TTCGAA 1 cut(s) 208
Bsp143I GATC 4 cut(s) 253, 274, 408, 640
BspACI CCGC 2 cut(s) 105, 726
BspANI GGCC 1 cut(s) 325
BspCNI CTCAG 2 cut(s) 75, 524
BspFNI CGCG 1 cut(s) 791
BspLI GGNNCC 2 cut(s) 443, 880
BspPI GGATC 2 cut(s) 248, 269
BspT104I TTCGAA 1 cut(s) 208
BspT107I GGYRCC 1 cut(s) 441
BsrDI GCAATG 2 cut(s) 45, 964
BsrFI RCCGGY 1 cut(s) 620
BsrI ACTGG 3 cut(s) 84, 342, 935
BssAI RCCGGY 1 cut(s) 620
BssMI GATC 4 cut(s) 253, 274, 408, 640
Bst2UI CCWGG 1 cut(s) 710
Bst4CI ACNGT 4 cut(s) 167, 302, 308, 473
Bst6I CTCTTC 2 cut(s) 26, 367
BstBAI YACGTR 1 cut(s) 942
BstBI TTCGAA 1 cut(s) 208
BstC8I GCNNGC 1 cut(s) 491
BstDEI CTNAG 4 cut(s) 62, 511, 566, 822
BstEII GGTNACC 1 cut(s) 685
BstF5I GGATG 1 cut(s) 716
BstFNI CGCG 1 cut(s) 791
BstHHI GCGC 1 cut(s) 590
BstKTI GATC 4 cut(s) 256, 277, 411, 643
BstMAI GTCTC 2 cut(s) 9, 620
BstMBI GATC 4 cut(s) 253, 274, 408, 640
BstMWI GCNNNNNNNGC 3 cut(s) 80, 153, 705
BstNI CCWGG 1 cut(s) 710
BstNSI RCATGY 1 cut(s) 738
BstPI GGTNACC 1 cut(s) 685
BstSCI CCNGG 3 cut(s) 190, 444, 708
BstSFI CTRYAG 1 cut(s) 910
BstUI CGCG 1 cut(s) 791
BstV1I GCAGC 2 cut(s) 86, 165
Bsu36I CCTNAGG 1 cut(s) 566
BsuRI GGCC 1 cut(s) 325
BtsCI GGATG 1 cut(s) 716
BtsIMutI CAGTG 3 cut(s) 270, 555, 710
Cac8I GCNNGC 1 cut(s) 491
CaiI CAGNNNCTG 1 cut(s) 860
CfoI GCGC 1 cut(s) 590
Cfr10I RCCGGY 1 cut(s) 620
Csp6I GTAC 5 cut(s) 345, 442, 528, 583, 907
CspAI ACCGGT 1 cut(s) 620
CspCI CAANNNNNGTGG 2 cut(s) 709, 744
CviAII CATG 3 cut(s) 283, 465, 735
CviQI GTAC 5 cut(s) 345, 442, 528, 583, 907
DdeI CTNAG 4 cut(s) 62, 511, 566, 822
DpnI GATC 4 cut(s) 255, 276, 410, 642
DpnII GATC 4 cut(s) 253, 274, 408, 640
Eam1104I CTCTTC 2 cut(s) 26, 367
EarI CTCTTC 2 cut(s) 26, 367
Eco147I AGGCCT 1 cut(s) 325
Eco57I CTGAAG 1 cut(s) 686
Eco81I CCTNAGG 1 cut(s) 566
Eco91I GGTNACC 1 cut(s) 685
EcoO65I GGTNACC 1 cut(s) 685
EcoRII CCWGG 1 cut(s) 708
FaeI CATG 3 cut(s) 286, 468, 738
FaiI YATR 9 cut(s) 242, 284, 428, 466, 597, 657, 736, 775, 828
FalI AAGNNNNNCTT 2 cut(s) 514, 546
FaqI GGGAC 1 cut(s) 632
FatI CATG 3 cut(s) 282, 464, 734
FbaI TGATCA 1 cut(s) 640
Fnu4HI GCNGC 3 cut(s) 75, 106, 154
FokI GGATG 1 cut(s) 703
Fsp4HI GCNGC 3 cut(s) 75, 106, 154
FspBI CTAG 5 cut(s) 296, 321, 477, 591, 600
GlaI GCGC 1 cut(s) 589
GluI GCNGC 3 cut(s) 75, 106, 154
HaeIII GGCC 1 cut(s) 325
HapII CCGG 5 cut(s) 191, 446, 500, 621, 683
HhaI GCGC 1 cut(s) 590
Hin1II CATG 3 cut(s) 286, 468, 738
Hin6I GCGC 1 cut(s) 588
HinP1I GCGC 1 cut(s) 588
HinfI GANTC 3 cut(s) 458, 560, 741
HpaII CCGG 5 cut(s) 191, 446, 500, 621, 683
HphI GGTGA 3 cut(s) 161, 314, 635
Hpy166II GTNNAC 2 cut(s) 197, 347
Hpy188I TCNGA 4 cut(s) 117, 187, 253, 977
Hpy188III TCNNGA 2 cut(s) 235, 335
Hpy8I GTNNAC 2 cut(s) 197, 347
HpyAV CCTTC 5 cut(s) 62, 137, 182, 225, 710
HpyCH4III ACNGT 4 cut(s) 167, 302, 308, 473
HpyCH4IV ACGT 2 cut(s) 694, 941
HpyCH4V TGCA 4 cut(s) 93, 489, 607, 848
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 153, 705
HpyF3I CTNAG 4 cut(s) 62, 511, 566, 822
HpySE526I ACGT 2 cut(s) 694, 941
Hsp92II CATG 3 cut(s) 286, 468, 738
HspAI GCGC 1 cut(s) 588
KpnI GGTACC 1 cut(s) 445
Ksp22I TGATCA 1 cut(s) 640
Kzo9I GATC 4 cut(s) 253, 274, 408, 640
LmnI GCTCC 2 cut(s) 188, 878
Lsp1109I GCAGC 2 cut(s) 86, 165
MaeI CTAG 5 cut(s) 296, 321, 477, 591, 600
MaeII ACGT 2 cut(s) 694, 941
MaeIII GTNAC 8 cut(s) 167, 268, 302, 354, 455, 467, 685, 937
MalI GATC 4 cut(s) 255, 276, 410, 642
MboI GATC 4 cut(s) 253, 274, 408, 640
MboII GAAGA 4 cut(s) 13, 354, 376, 410
MfeI CAATTG 1 cut(s) 388
MluCI AATT 4 cut(s) 31, 388, 888, 900
MlyI GAGTC 1 cut(s) 452
MnlI CCTC 4 cut(s) 77, 267, 520, 825
MroXI GAANNNNTTC 1 cut(s) 214
MseI TTAA 1 cut(s) 120
MslI CAYNNNNRTG 1 cut(s) 665
MspI CCGG 5 cut(s) 191, 446, 500, 621, 683
MspR9I CCNGG 3 cut(s) 192, 446, 710
MunI CAATTG 1 cut(s) 388
Mva1269I GAATGC 1 cut(s) 660
MvaI CCWGG 1 cut(s) 710
MvnI CGCG 1 cut(s) 791
MwoI GCNNNNNNNGC 3 cut(s) 80, 153, 705
NciI CCSGG 2 cut(s) 192, 446
NdeII GATC 4 cut(s) 253, 274, 408, 640
NlaIII CATG 3 cut(s) 286, 468, 738
NlaIV GGNNCC 2 cut(s) 443, 880
NmuCI GTSAC 6 cut(s) 167, 268, 302, 354, 455, 467
NspI RCATGY 1 cut(s) 738
NspV TTCGAA 1 cut(s) 208
PceI AGGCCT 1 cut(s) 325
PciI ACATGT 1 cut(s) 734
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PctI GAATGC 1 cut(s) 660
PdmI GAANNNNTTC 1 cut(s) 214
PfeI GAWTC 2 cut(s) 560, 741
PflMI CCANNNNNTGG 1 cut(s) 656
PinAI ACCGGT 1 cut(s) 620
PkrI GCNGC 3 cut(s) 76, 107, 155
PleI GAGTC 1 cut(s) 452
PpsI GAGTC 1 cut(s) 452
Ppu21I YACGTR 1 cut(s) 942
PscI ACATGT 1 cut(s) 734
Psp6I CCWGG 1 cut(s) 708
PspEI GGTNACC 1 cut(s) 685
PspGI CCWGG 1 cut(s) 708
PspN4I GGNNCC 2 cut(s) 443, 880
PsrI GAACNNNNNNTAC 2 cut(s) 520, 552
PstNI CAGNNNCTG 1 cut(s) 860
RsaI GTAC 5 cut(s) 346, 443, 529, 584, 908
RsaNI GTAC 5 cut(s) 345, 442, 528, 583, 907
RseI CAYNNNNRTG 1 cut(s) 665
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 3 cut(s) 75, 106, 154
Sau3AI GATC 4 cut(s) 253, 274, 408, 640
ScaI AGTACT 2 cut(s) 529, 584
SchI GAGTC 1 cut(s) 452
ScrFI CCNGG 3 cut(s) 192, 446, 710
SfcI CTRYAG 1 cut(s) 910
SfuI TTCGAA 1 cut(s) 208
SgrAI CRCCGGYG 1 cut(s) 620
SmiMI CAYNNNNRTG 1 cut(s) 665
SmlI CTYRAG 2 cut(s) 78, 200
SmoI CTYRAG 2 cut(s) 78, 200
SpeI ACTAGT 1 cut(s) 599
Sse9I AATT 4 cut(s) 31, 388, 888, 900
SseBI AGGCCT 1 cut(s) 325
SsiI CCGC 2 cut(s) 105, 726
SspMI CTAG 5 cut(s) 296, 321, 477, 591, 600
StuI AGGCCT 1 cut(s) 325
StyD4I CCNGG 3 cut(s) 190, 444, 708
TaaI ACNGT 4 cut(s) 167, 302, 308, 473
TaiI ACGT 2 cut(s) 697, 944
TaqI TCGA 4 cut(s) 208, 313, 664, 744
TasI AATT 4 cut(s) 31, 388, 888, 900
TatI WGTACW 3 cut(s) 344, 527, 582
TauI GCSGC 1 cut(s) 108
TfiI GAWTC 2 cut(s) 560, 741
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TscAI CASTG 3 cut(s) 277, 562, 710
TseFI GTSAC 6 cut(s) 167, 268, 302, 354, 455, 467
TseI GCWGC 2 cut(s) 74, 153
Tsp45I GTSAC 6 cut(s) 167, 268, 302, 354, 455, 467
TspDTI ATGAA 4 cut(s) 25, 34, 156, 271
TspRI CASTG 3 cut(s) 277, 562, 710
Van91I CCANNNNNTGG 1 cut(s) 656
XapI RAATTY 1 cut(s) 900
XceI RCATGY 1 cut(s) 738
XmnI GAANNNNTTC 1 cut(s) 214
XspI CTAG 5 cut(s) 296, 321, 477, 591, 600
ZrmI AGTACT 2 cut(s) 529, 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.