Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009013

Physical Location & Seq

Genomic Coordinates Forward (+)

4544889 .. 4547373

Gene Structure 2485 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G13270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCGTCTTCGGTTTTTCTATCCAGTTTCTCGTCATCGTCTTCTTTGCAACTCTGCTCTTCCTTTCACGGCGAGTACTTAGCTCCGTCGAGATGCTTTCTCGGAGCTCCGGTCACTTCCTCTTCTTTATCACTCTCCGGTAAGAAGAACTCATATTCTCCGAGACAGTTCCATGTTTCTGCCAAGAAAGTTTCTGGGTTAGAGGAAGCCATTAGAATCAGAAAAATGAGAGAGCTTGAAACTAAATCAAAAGTTAGGAGAAATCCACCATTAAGACGTGGAAGAGTATCGCCTCGTCTTCTTGTACCTGATCACATTCCAAGGCCTCCTTATGTTGAGTCTGGTGTATTACCGGATATATCAAGTGAGTTCCAGATTCCTGGTCCTGAAGGCATTGCGAAAATGAGAGCTGCTTGCGAGCTTGCTGCTCGGGTTTTAAACTATGCTGGAACTTTGGTTAAGCCATCTGTTACGACTAATGAAATCGATAAAGCTGTGCATGATATGATTATTGAAGCTGGTGCTTATCCTTCACCTCTTGGATATGGTGGATTTCCTAAAAGTGTGTGTACTTCAGTTAATGAGTGTATGTGTCACGGAATACCAGATTCTCGCCAGCTACAGAGCGGGGATATAATCAACATCGATGTCACGGTTTACTTGGATGGTTACCATGGAGATACGTCGAGAACTTTCTTCTGTGGAGAAGTTGACGAAGGTTTCAAACGACTTGTGAAGGTTACGGAAGAATGTTTGGAGAGAGGTATTGCAGTTTGTAAAGACGGAGCAAGCTTCAAGAAAATCGGGAAAAGAATCAGTGAGCATGCGGAAAAGTTCGGCTACAACGTTGTGGAGCGGTTTGTTGGGCATGGTGTTGGACCAGTATTCCACTCCGAACCTCTTATATATCATTACCGAAATGATGAGCCTGGACTAATGGTTGAGGGACAGACATTCACAATTGAACCGATTCTCACGATTGGAACCACAGAATGTGTAACATGGCCAGACAACTGGACTACTCTGACAGCAGATGGTGGCGTCGCTGCTCAGTTTGAGCATACCATTCTGATTACTAGAACTGGTTCAGAGATTCTTACCAAATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

369

Amino Acids

40.42

Weight (kDa)

7.14

Isoelectric Point (pI)

50.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	134 - 359	8e-54	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13270 AT1G13270
fragaria_vesca	FvH4_4g28020
malus_domestica	MD13G1046000.v1.1 MD16G1047600.v1.1
prunus_persica	Prupe.1G306000_v2.0.a1 Prupe.1G306000_v2.0.a1 Prupe.1G306000_v2.0.a1 Prupe.1G306000_v2.0.a1
pyrus_communis	pycom13g04040 pycom16g04160
rosa_chinensis	RchiOBHm_Chr4g0435761
rosa_laevigata	RLG00000006561
rosa_multiflora	Rmu_co8005306.1_g000001 Rmu_sc0000051.1_g000022 Rmu_sc0036818.1_g000001
rosa_rugosa	Rorug04G0289400
rosa_samantha	Rh4AG343700 Rh4BG352400 Rh4CG366900 Rh4DG346300
rosa_wichuraiana	Rw4G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	627, 856
AciI	CCGC	3 cut(s)	627, 827, 856
AclI	AACGTT	1 cut(s)	846
AcoI	YGGCCR	1 cut(s)	1004
AcuI	CTGAAG	2 cut(s)	408, 558
AcyI	GRCGYC	2 cut(s)	5, 1041
AfaI	GTAC	3 cut(s)	77, 306, 571
AgsI	TTSAA	5 cut(s)	239, 515, 724, 796, 965
AjiI	CACGTC	1 cut(s)	278
AjnI	CCWGG	2 cut(s)	379, 928
AluBI	AGCT	9 cut(s)	83, 107, 235, 410, 421, 494, 518, 619, 792
AluI	AGCT	9 cut(s)	83, 107, 235, 410, 421, 494, 518, 619, 792
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	1 cut(s)	157
Ama87I	CYCGRG	1 cut(s)	429
AoxI	GGCC	2 cut(s)	323, 1004
ApeKI	GCWGC	3 cut(s)	410, 425, 1046
Asp700I	GAANNNNTTC	2 cut(s)	969, 1084
AspS9I	GGNCC	2 cut(s)	383, 878
AsuHPI	GGTGA	1 cut(s)	525
AvaI	CYCGRG	1 cut(s)	429
AvaII	GGWCC	2 cut(s)	383, 878
BalI	TGGCCA	1 cut(s)	1006
BanII	GRGCYC	1 cut(s)	109
BbsI	GAAGAC	2 cut(s)	33, 290
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	3 cut(s)	397, 412, 1033
BccI	CCATC	3 cut(s)	472, 659, 1028
BceAI	ACGGC	1 cut(s)	85
BcgI	CGANNNNNNTGC	2 cut(s)	407, 441
BciT130I	CCWGG	2 cut(s)	381, 930
BclI	TGATCA	1 cut(s)	310
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	1 cut(s)	1077
BfmI	CTRYAG	1 cut(s)	620
BisI	GCNGC	3 cut(s)	411, 426, 1047
BlsI	GCNGC	3 cut(s)	412, 427, 1048
BmcAI	AGTACT	1 cut(s)	77
Bme1390I	CCNGG	2 cut(s)	381, 930
Bme18I	GGWCC	2 cut(s)	383, 878
BmeT110I	CYCGRG	1 cut(s)	429
BmgBI	CACGTC	1 cut(s)	278
BmgT120I	GGNCC	2 cut(s)	383, 878
BmiI	GGNNCC	1 cut(s)	985
BmrFI	CCNGG	2 cut(s)	381, 930
BmsI	GCATC	1 cut(s)	83
BpiI	GAAGAC	2 cut(s)	33, 290
Bsa29I	ATCGAT	2 cut(s)	486, 645
BsaHI	GRCGYC	2 cut(s)	5, 1041
BsaJI	CCNNGG	2 cut(s)	320, 673
BsaWI	WCCGGW	3 cut(s)	109, 137, 352
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bse1I	ACTGG	4 cut(s)	24, 881, 1019, 1087
Bse3DI	GCAATG	1 cut(s)	393
BseBI	CCWGG	2 cut(s)	381, 930
BseCI	ATCGAT	2 cut(s)	486, 645
BseDI	CCNNGG	2 cut(s)	320, 673
BseGI	GGATG	1 cut(s)	670
BseMI	GCAATG	1 cut(s)	393
BseMII	CTCAG	1 cut(s)	1064
BseNI	ACTGG	4 cut(s)	24, 881, 1019, 1087
BseXI	GCAGC	3 cut(s)	397, 412, 1033
BshFI	GGCC	2 cut(s)	325, 1006
BshVI	ATCGAT	2 cut(s)	486, 645
BsiHKAI	GWGCWC	1 cut(s)	109
BsiHKCI	CYCGRG	1 cut(s)	429
BsiSI	CCGG	3 cut(s)	110, 138, 353
BslFI	GGGAC	1 cut(s)	960
BsmAI	GTCTC	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	960
BsnI	GGCC	2 cut(s)	325, 1006
BsoBI	CYCGRG	1 cut(s)	429
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	1 cut(s)	310
Bsp19I	CCATGG	1 cut(s)	673
BspACI	CCGC	3 cut(s)	627, 827, 856
BspANI	GGCC	2 cut(s)	325, 1006
BspCNI	CTCAG	1 cut(s)	1063
BspDI	ATCGAT	2 cut(s)	486, 645
BspLI	GGNNCC	1 cut(s)	985
BspQI	GCTCTTC	1 cut(s)	64
BsrBI	CCGCTC	2 cut(s)	627, 856
BsrDI	GCAATG	1 cut(s)	393
BsrI	ACTGG	4 cut(s)	24, 881, 1019, 1087
BssECI	CCNNGG	2 cut(s)	320, 673
BssMI	GATC	1 cut(s)	310
BssNI	GRCGYC	2 cut(s)	5, 1041
BssT1I	CCWWGG	2 cut(s)	320, 673
Bst2UI	CCWGG	2 cut(s)	381, 930
Bst4CI	ACNGT	2 cut(s)	168, 655
Bst6I	CTCTTC	3 cut(s)	64, 127, 277
BstACI	GRCGYC	2 cut(s)	5, 1041
BstC8I	GCNNGC	6 cut(s)	415, 419, 423, 617, 790, 825
BstDEI	CTNAG	2 cut(s)	79, 1050
BstDSI	CCRYGG	1 cut(s)	673
BstEII	GGTNACC	1 cut(s)	668
BstF5I	GGATG	1 cut(s)	670
BstKTI	GATC	1 cut(s)	313
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	310
BstNI	CCWGG	2 cut(s)	381, 930
BstNSI	RCATGY	1 cut(s)	827
BstPI	GGTNACC	1 cut(s)	668
BstSCI	CCNGG	2 cut(s)	379, 928
BstSFI	CTRYAG	1 cut(s)	620
BstV1I	GCAGC	3 cut(s)	397, 412, 1033
BstV2I	GAAGAC	2 cut(s)	33, 290
BstXI	CCANNNNNNTGG	2 cut(s)	380, 1014
Bsu15I	ATCGAT	2 cut(s)	486, 645
BsuRI	GGCC	2 cut(s)	325, 1006
BsuTUI	ATCGAT	2 cut(s)	486, 645
BtgI	CCRYGG	1 cut(s)	673
BtrI	CACGTC	1 cut(s)	278
BtsCI	GGATG	1 cut(s)	670
BtsIMutI	CAGTG	1 cut(s)	823
Cac8I	GCNNGC	6 cut(s)	415, 419, 423, 617, 790, 825
Cfr13I	GGNCC	2 cut(s)	383, 878
ClaI	ATCGAT	2 cut(s)	486, 645
CseI	GACGC	1 cut(s)	1030
Csp6I	GTAC	3 cut(s)	76, 305, 570
CviAII	CATG	6 cut(s)	173, 500, 674, 824, 869, 1002
CviQI	GTAC	3 cut(s)	76, 305, 570
DdeI	CTNAG	2 cut(s)	79, 1050
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
DraI	TTTAAA	1 cut(s)	438
EaeI	YGGCCR	1 cut(s)	1004
Eam1104I	CTCTTC	3 cut(s)	64, 127, 277
EarI	CTCTTC	3 cut(s)	64, 127, 277
Ecl136II	GAGCTC	1 cut(s)	107
Eco130I	CCWWGG	2 cut(s)	320, 673
Eco147I	AGGCCT	1 cut(s)	325
Eco24I	GRGCYC	1 cut(s)	109
Eco47I	GGWCC	2 cut(s)	383, 878
Eco53kI	GAGCTC	1 cut(s)	107
Eco57I	CTGAAG	2 cut(s)	408, 558
Eco88I	CYCGRG	1 cut(s)	429
Eco91I	GGTNACC	1 cut(s)	668
EcoICRI	GAGCTC	1 cut(s)	107
EcoO65I	GGTNACC	1 cut(s)	668
EcoRII	CCWGG	2 cut(s)	379, 928
EcoT14I	CCWWGG	2 cut(s)	320, 673
EcoT38I	GRGCYC	1 cut(s)	109
ErhI	CCWWGG	2 cut(s)	320, 673
FaeI	CATG	6 cut(s)	176, 503, 677, 827, 872, 1005
FalI	AAGNNNNNCTT	2 cut(s)	313, 345
FaqI	GGGAC	1 cut(s)	960
FatI	CATG	6 cut(s)	172, 499, 673, 823, 868, 1001
FauI	CCCGC	1 cut(s)	620
FbaI	TGATCA	1 cut(s)	310
Fnu4HI	GCNGC	3 cut(s)	411, 426, 1047
FokI	GGATG	1 cut(s)	677
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	3 cut(s)	411, 426, 1047
FspBI	CTAG	1 cut(s)	1077
GluI	GCNGC	3 cut(s)	411, 426, 1047
HaeIII	GGCC	2 cut(s)	325, 1006
HapII	CCGG	3 cut(s)	110, 138, 353
HgaI	GACGC	1 cut(s)	1030
Hin1I	GRCGYC	2 cut(s)	5, 1041
Hin1II	CATG	6 cut(s)	176, 503, 677, 827, 872, 1005
HincII	GTYRAC	1 cut(s)	712
HindII	GTYRAC	1 cut(s)	712
HindIII	AAGCTT	1 cut(s)	790
HinfI	GANTC	7 cut(s)	216, 338, 376, 608, 813, 970, 1093
HpaII	CCGG	3 cut(s)	110, 138, 353
HphI	GGTGA	1 cut(s)	525
Hpy166II	GTNNAC	3 cut(s)	570, 658, 712
Hpy188I	TCNGA	7 cut(s)	104, 162, 221, 895, 1026, 1071, 1090
Hpy188III	TCNNGA	7 cut(s)	90, 373, 386, 687, 796, 805, 976
Hpy8I	GTNNAC	3 cut(s)	570, 658, 712
Hpy99I	CGWCG	3 cut(s)	91, 688, 1046
HpyAV	CCTTC	4 cut(s)	383, 540, 710, 730
HpyCH4III	ACNGT	2 cut(s)	168, 655
HpyCH4IV	ACGT	3 cut(s)	277, 683, 846
HpyCH4V	TGCA	3 cut(s)	49, 499, 770
HpyF3I	CTNAG	2 cut(s)	79, 1050
HpySE526I	ACGT	3 cut(s)	277, 683, 846
Hsp92I	GRCGYC	2 cut(s)	5, 1041
Hsp92II	CATG	6 cut(s)	176, 503, 677, 827, 872, 1005
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	1 cut(s)	310
LguI	GCTCTTC	1 cut(s)	64
LmnI	GCTCC	5 cut(s)	88, 104, 112, 785, 853
Lsp1109I	GCAGC	3 cut(s)	397, 412, 1033
LweI	GCATC	1 cut(s)	83
MaeI	CTAG	1 cut(s)	1077
MaeII	ACGT	3 cut(s)	277, 683, 846
MaeIII	GTNAC	7 cut(s)	112, 469, 593, 649, 668, 739, 997
MalI	GATC	1 cut(s)	312
MbiI	CCGCTC	2 cut(s)	627, 856
MboI	GATC	1 cut(s)	310
MboII	GAAGA	8 cut(s)	33, 51, 114, 157, 290, 294, 688, 758
MfeI	CAATTG	1 cut(s)	960
MhlI	GDGCHC	1 cut(s)	109
MlsI	TGGCCA	1 cut(s)	1006
MluCI	AATT	1 cut(s)	960
MluNI	TGGCCA	1 cut(s)	1006
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	1 cut(s)	856
MnlI	CCTC	8 cut(s)	130, 196, 303, 336, 546, 755, 909, 937
Mox20I	TGGCCA	1 cut(s)	1006
MroXI	GAANNNNTTC	2 cut(s)	969, 1084
MscI	TGGCCA	1 cut(s)	1006
MseI	TTAA	4 cut(s)	272, 437, 459, 579
Msp20I	TGGCCA	1 cut(s)	1006
MspI	CCGG	3 cut(s)	110, 138, 353
MspR9I	CCNGG	2 cut(s)	381, 930
MunI	CAATTG	1 cut(s)	960
MvaI	CCWGG	2 cut(s)	381, 930
NcoI	CCATGG	1 cut(s)	673
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	6 cut(s)	176, 503, 677, 827, 872, 1005
NlaIV	GGNNCC	1 cut(s)	985
NmuCI	GTSAC	3 cut(s)	112, 593, 649
NspI	RCATGY	1 cut(s)	827
PaeI	GCATGC	1 cut(s)	827
PceI	AGGCCT	1 cut(s)	325
PciSI	GCTCTTC	1 cut(s)	64
PcsI	WCGNNNNNNNCGW	1 cut(s)	843
PdmI	GAANNNNTTC	2 cut(s)	969, 1084
PfeI	GAWTC	6 cut(s)	216, 376, 608, 813, 970, 1093
PkrI	GCNGC	3 cut(s)	412, 427, 1048
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
Psp124BI	GAGCTC	1 cut(s)	109
Psp1406I	AACGTT	1 cut(s)	846
Psp6I	CCWGG	2 cut(s)	379, 928
PspEI	GGTNACC	1 cut(s)	668
PspGI	CCWGG	2 cut(s)	379, 928
PspN4I	GGNNCC	1 cut(s)	985
PspPI	GGNCC	2 cut(s)	383, 878
RsaI	GTAC	3 cut(s)	77, 306, 571
RsaNI	GTAC	3 cut(s)	76, 305, 570
SacI	GAGCTC	1 cut(s)	109
SapI	GCTCTTC	1 cut(s)	64
SaqAI	TTAA	4 cut(s)	272, 437, 459, 579
SatI	GCNGC	3 cut(s)	411, 426, 1047
Sau3AI	GATC	1 cut(s)	310
Sau96I	GGNCC	2 cut(s)	383, 878
ScaI	AGTACT	1 cut(s)	77
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	2 cut(s)	381, 930
SduI	GDGCHC	1 cut(s)	109
SfaNI	GCATC	1 cut(s)	83
SfcI	CTRYAG	1 cut(s)	620
SinI	GGWCC	2 cut(s)	383, 878
SphI	GCATGC	1 cut(s)	827
Sse9I	AATT	1 cut(s)	960
SseBI	AGGCCT	1 cut(s)	325
SsiI	CCGC	3 cut(s)	627, 827, 856
SspMI	CTAG	1 cut(s)	1077
SstI	GAGCTC	1 cut(s)	109
StuI	AGGCCT	1 cut(s)	325
StyD4I	CCNGG	2 cut(s)	379, 928
StyI	CCWWGG	2 cut(s)	320, 673
TaaI	ACNGT	2 cut(s)	168, 655
TaiI	ACGT	3 cut(s)	280, 686, 849
TaqI	TCGA	4 cut(s)	89, 486, 645, 686
TasI	AATT	1 cut(s)	960
TatI	WGTACW	2 cut(s)	75, 569
TfiI	GAWTC	6 cut(s)	216, 376, 608, 813, 970, 1093
Tru1I	TTAA	4 cut(s)	272, 437, 459, 579
Tru9I	TTAA	4 cut(s)	272, 437, 459, 579
TscAI	CASTG	1 cut(s)	823
TseFI	GTSAC	3 cut(s)	112, 593, 649
TseI	GCWGC	3 cut(s)	410, 425, 1046
Tsp45I	GTSAC	3 cut(s)	112, 593, 649
TspDTI	ATGAA	1 cut(s)	495
TspGWI	ACGGA	4 cut(s)	75, 612, 758, 798
TspRI	CASTG	1 cut(s)	823
VpaK11BI	GGWCC	2 cut(s)	383, 878
XceI	RCATGY	1 cut(s)	827
XmnI	GAANNNNTTC	2 cut(s)	969, 1084
XspI	CTAG	1 cut(s)	1077
ZrmI	AGTACT	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.