MD13G1046000.v1.1

Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val)

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
3178997 .. 3182405
3409 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1046000.v1.1.491

Sequence Viewer

Length: 1098 bp
ATGGCAGTCGCCGGAGGTCTGCAACTCTCAGCTCCTTCTCATGGCTGCCAAGGCCAAGTCTTACTAAGTTCAACGAAGTCAACTCTCTTCGCCGGGTCCCCACTCAGCTTCTCCCTCTCCACCTATGGAAAAGAATCCTTTTGTCGGAAGAACCTCGTTGTGTTTGCTCGGAGACTTTCGGGGTTGGAGGAGGCCATGAGAATTAAAAGAGATCGTGAGACTCGGCAGCTTGCGCCAAAGATTGGAAGAAGGCCGCCATTGAGGCGTGGAAGGGTGTCGCCACAACTTCCCGTTCCAGATCACATTCCTAGGCCTCCTTATGTTGGTTCATCTATATTGCCAGAAATTGCCAGTGAACATCAATTTCCTGGTTCTGAAGGCATTGCTGATATGCGAGCTGCGTGCGAGCTTGCTGCTCGCGTCTTAGAATCTGCAGGAAAGTTGGTTAGGCCGTCAATAACAACTAATGAAATTGACATAGCAGTGCACCAGATGATTGTTGATGCTGGTGCCTATCCCTCACCACTTGGCTATGGAGGATTTCCGAAGAGTGTATGCACATCTGTTAACGAGTGCATGTGCCATGGAATTCCTGATTCTCGACAGTTACAGAGTGGAGACATTATCAACATAGATGTGACGGTCTACCTAAATGGATATCATGGAGACACATCAAAGACCTTTCTTTGTGGGGAGGTCAGTGAATCAATCCAACGACTACTGAAGGTAACCGAAGAATGCTTGGAAAAAGGCATAGCAGTTTGCAAGGACGGTGCTAGCTTCAAGAAAATTGGAAAGAGAATTAGCGAACATGCTGAAAAATATGGTTATGGCGTAGTAGAGCGCTTTGTTGGGCACGGTGTAGGGACTGTATTTCATTCTGAACCATTAATATTACATCACCGGAATGACCAGTCTGGTTCCATGGTTGAAGGTCAGACATTTACCATTGAACCCATCCTTACAATGGGAAGCATCGAGTGTAAAACGTGGCCGGACAATTGGACGACGCTGACCGCGGACGGTAGCCCGGCTGCGCAGTTTGAACATACCATTCTGATTACTAGAACCGGTGCTGAGATTTTGACAACATGTTAA

Protein Analysis

366

Amino Acids

39.58

Weight (kDa)

7.17

Isoelectric Point (pI)

50.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M24 PF00557 130 - 355 8.6e-52 Metallopeptidase family M24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1038
AccB1I GGYRCC 1 cut(s) 509
AccB7I CCANNNNNTGG 1 cut(s) 242
AccI GTMKAC 1 cut(s) 645
AccII CGCG 2 cut(s) 420, 1019
AciI CCGC 3 cut(s) 254, 1017, 1019
AcoI YGGCCR 1 cut(s) 992
AcsI RAATTY 1 cut(s) 588
AcuI CTGAAG 2 cut(s) 396, 743
AfeI AGCGCT 1 cut(s) 845
AfiI CCNNNNNNNGG 5 cut(s) 41, 144, 242, 323, 967
AflIII ACRYGT 1 cut(s) 1091
AgeI ACCGGT 1 cut(s) 1070
AgsI TTSAA 5 cut(s) 72, 784, 932, 953, 1046
AjnI CCWGG 1 cut(s) 367
AluBI AGCT 6 cut(s) 32, 108, 229, 398, 409, 780
AluI AGCT 6 cut(s) 32, 108, 229, 398, 409, 780
Alw21I GWGCWC 1 cut(s) 489
Alw26I GTCTC 4 cut(s) 166, 212, 612, 660
Alw44I GTGCAC 1 cut(s) 485
Aor51HI AGCGCT 1 cut(s) 845
AoxI GGCC 6 cut(s) 52, 192, 251, 311, 449, 992
ApaLI GTGCAC 1 cut(s) 485
ApeKI GCWGC 5 cut(s) 45, 226, 398, 413, 1034
ApoI RAATTY 1 cut(s) 588
AseI ATTAAT 1 cut(s) 890
AsiGI ACCGGT 1 cut(s) 1070
AspA2I CCTAGG 1 cut(s) 308
AspLEI GCGC 3 cut(s) 235, 846, 1039
AspS9I GGNCC 1 cut(s) 96
AsuC2I CCSGG 2 cut(s) 94, 1031
AsuHPI GGTGA 2 cut(s) 513, 893
AsuNHI GCTAGC 1 cut(s) 776
AvaII GGWCC 1 cut(s) 96
AvrII CCTAGG 1 cut(s) 308
BaeGI GKGCMC 2 cut(s) 489, 858
BanI GGYRCC 1 cut(s) 509
Bbv12I GWGCWC 1 cut(s) 489
BbvI GCAGC 5 cut(s) 32, 238, 385, 400, 1021
BccI CCATC 1 cut(s) 965
BceAI ACGGC 1 cut(s) 436
BcgI CGANNNNNNTGC 4 cut(s) 384, 395, 418, 429
BciT130I CCWGG 1 cut(s) 369
BcnI CCSGG 2 cut(s) 94, 1031
BcoDI GTCTC 4 cut(s) 166, 212, 612, 660
BfaI CTAG 3 cut(s) 309, 777, 1065
BfmI CTRYAG 1 cut(s) 432
BfoI RGCGCY 1 cut(s) 847
BglI GCCNNNNNGGC 1 cut(s) 262
BisI GCNGC 6 cut(s) 46, 227, 254, 399, 414, 1035
BlnI CCTAGG 1 cut(s) 308
BlsI GCNGC 6 cut(s) 47, 228, 255, 400, 415, 1036
Bme1390I CCNGG 3 cut(s) 94, 369, 1031
Bme18I GGWCC 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 96
BmiI GGNNCC 4 cut(s) 97, 98, 511, 922
BmrFI CCNGG 3 cut(s) 94, 369, 1031
BmsI GCATC 2 cut(s) 493, 984
BmtI GCTAGC 1 cut(s) 780
BpuMI CCSGG 2 cut(s) 94, 1031
BsaJI CCNNGG 5 cut(s) 49, 308, 583, 924, 1017
BsaWI WCCGGW 2 cut(s) 903, 1070
Bsc4I CCNNNNNNNGG 5 cut(s) 41, 144, 242, 323, 967
Bse118I RCCGGY 1 cut(s) 1070
Bse1I ACTGG 2 cut(s) 351, 913
Bse3DI GCAATG 1 cut(s) 381
BseBI CCWGG 1 cut(s) 369
BseDI CCNNGG 5 cut(s) 49, 308, 583, 924, 1017
BseGI GGATG 1 cut(s) 957
BseLI CCNNNNNNNGG 5 cut(s) 41, 144, 242, 323, 967
BseMI GCAATG 1 cut(s) 381
BseMII CTCAG 3 cut(s) 42, 118, 1068
BseNI ACTGG 2 cut(s) 351, 913
BseRI GAGGAG 1 cut(s) 203
BseSI GKGCMC 2 cut(s) 489, 858
BseXI GCAGC 5 cut(s) 32, 238, 385, 400, 1021
Bsh1236I CGCG 2 cut(s) 420, 1019
BshFI GGCC 6 cut(s) 54, 194, 253, 313, 451, 994
BshNI GGYRCC 1 cut(s) 509
BshTI ACCGGT 1 cut(s) 1070
BsiHKAI GWGCWC 1 cut(s) 489
BsiSI CCGG 6 cut(s) 12, 93, 904, 995, 1031, 1071
BslFI GGGAC 2 cut(s) 82, 880
BslI CCNNNNNNNGG 5 cut(s) 41, 144, 242, 323, 967
BsmAI GTCTC 4 cut(s) 166, 212, 612, 660
BsmFI GGGAC 2 cut(s) 82, 880
BsmI GAATGC 1 cut(s) 743
BsnI GGCC 6 cut(s) 54, 194, 253, 313, 451, 994
Bsp1286I GDGCHC 2 cut(s) 489, 858
Bsp143I GATC 2 cut(s) 211, 298
Bsp19I CCATGG 2 cut(s) 583, 924
BspACI CCGC 3 cut(s) 254, 1017, 1019
BspANI GGCC 6 cut(s) 54, 194, 253, 313, 451, 994
BspCNI CTCAG 3 cut(s) 41, 117, 1069
BspFNI CGCG 2 cut(s) 420, 1019
BspLI GGNNCC 4 cut(s) 97, 98, 511, 922
BspMAI CTGCAG 1 cut(s) 436
BspOI GCTAGC 1 cut(s) 780
BspT107I GGYRCC 1 cut(s) 509
BsrDI GCAATG 1 cut(s) 381
BsrFI RCCGGY 1 cut(s) 1070
BsrI ACTGG 2 cut(s) 351, 913
BssAI RCCGGY 1 cut(s) 1070
BssECI CCNNGG 5 cut(s) 49, 308, 583, 924, 1017
BssMI GATC 2 cut(s) 211, 298
BssT1I CCWWGG 4 cut(s) 49, 308, 583, 924
Bst2UI CCWGG 1 cut(s) 369
Bst4CI ACNGT 6 cut(s) 606, 643, 773, 860, 871, 1025
Bst6I CTCTTC 2 cut(s) 92, 542
BstC8I GCNNGC 7 cut(s) 231, 396, 403, 407, 411, 418, 778
BstDEI CTNAG 5 cut(s) 28, 65, 104, 424, 1077
BstDSI CCRYGG 3 cut(s) 583, 924, 1017
BstEII GGTNACC 1 cut(s) 727
BstF5I GGATG 1 cut(s) 957
BstFNI CGCG 2 cut(s) 420, 1019
BstH2I RGCGCY 1 cut(s) 847
BstHHI GCGC 3 cut(s) 235, 846, 1039
BstKTI GATC 2 cut(s) 214, 301
BstMAI GTCTC 4 cut(s) 166, 212, 612, 660
BstMBI GATC 2 cut(s) 211, 298
BstMWI GCNNNNNNNGC 3 cut(s) 51, 232, 262
BstNI CCWGG 1 cut(s) 369
BstNSI RCATGY 3 cut(s) 580, 815, 1095
BstPI GGTNACC 1 cut(s) 727
BstSCI CCNGG 3 cut(s) 92, 367, 1029
BstSFI CTRYAG 1 cut(s) 432
BstSLI GKGCMC 2 cut(s) 489, 858
BstUI CGCG 2 cut(s) 420, 1019
BstV1I GCAGC 5 cut(s) 32, 238, 385, 400, 1021
BsuRI GGCC 6 cut(s) 54, 194, 253, 313, 451, 994
BtgI CCRYGG 3 cut(s) 583, 924, 1017
BtsCI GGATG 1 cut(s) 957
BtsI GCAGTG 1 cut(s) 489
BtsIMutI CAGTG 3 cut(s) 358, 489, 706
Cac8I GCNNGC 7 cut(s) 231, 396, 403, 407, 411, 418, 778
CfoI GCGC 3 cut(s) 235, 846, 1039
Cfr10I RCCGGY 1 cut(s) 1070
Cfr13I GGNCC 1 cut(s) 96
Cfr42I CCGCGG 1 cut(s) 1020
CseI GACGC 2 cut(s) 409, 1018
CspAI ACCGGT 1 cut(s) 1070
CviAII CATG 8 cut(s) 41, 196, 577, 584, 662, 812, 925, 1092
DdeI CTNAG 5 cut(s) 28, 65, 104, 424, 1077
DpnI GATC 2 cut(s) 213, 300
DpnII GATC 2 cut(s) 211, 298
EaeI YGGCCR 1 cut(s) 992
Eam1104I CTCTTC 2 cut(s) 92, 542
EarI CTCTTC 2 cut(s) 92, 542
Eco130I CCWWGG 4 cut(s) 49, 308, 583, 924
Eco147I AGGCCT 1 cut(s) 313
Eco32I GATATC 1 cut(s) 659
Eco47I GGWCC 1 cut(s) 96
Eco47III AGCGCT 1 cut(s) 845
Eco57I CTGAAG 2 cut(s) 396, 743
Eco91I GGTNACC 1 cut(s) 727
EcoO109I RGGNCCY 1 cut(s) 96
EcoO65I GGTNACC 1 cut(s) 727
EcoRI GAATTC 1 cut(s) 588
EcoRII CCWGG 1 cut(s) 367
EcoRV GATATC 1 cut(s) 659
EcoT14I CCWWGG 4 cut(s) 49, 308, 583, 924
ErhI CCWWGG 4 cut(s) 49, 308, 583, 924
FaeI CATG 8 cut(s) 44, 199, 580, 587, 665, 815, 928, 1095
FaqI GGGAC 2 cut(s) 82, 880
FatI CATG 8 cut(s) 40, 195, 576, 583, 661, 811, 924, 1091
FblI GTMKAC 1 cut(s) 645
Fnu4HI GCNGC 6 cut(s) 46, 227, 254, 399, 414, 1035
FokI GGATG 1 cut(s) 944
Fsp4HI GCNGC 6 cut(s) 46, 227, 254, 399, 414, 1035
FspBI CTAG 3 cut(s) 309, 777, 1065
FspI TGCGCA 1 cut(s) 1038
GlaI GCGC 3 cut(s) 234, 845, 1038
GluI GCNGC 6 cut(s) 46, 227, 254, 399, 414, 1035
HaeII RGCGCY 1 cut(s) 847
HaeIII GGCC 6 cut(s) 54, 194, 253, 313, 451, 994
HapII CCGG 6 cut(s) 12, 93, 904, 995, 1031, 1071
HgaI GACGC 2 cut(s) 409, 1018
HhaI GCGC 3 cut(s) 235, 846, 1039
Hin1II CATG 8 cut(s) 44, 199, 580, 587, 665, 815, 928, 1095
Hin6I GCGC 3 cut(s) 233, 844, 1037
HinP1I GCGC 3 cut(s) 233, 844, 1037
HincII GTYRAC 2 cut(s) 81, 568
HindII GTYRAC 2 cut(s) 81, 568
HinfI GANTC 5 cut(s) 134, 220, 428, 596, 704
HpaI GTTAAC 1 cut(s) 568
HpaII CCGG 6 cut(s) 12, 93, 904, 995, 1031, 1071
HphI GGTGA 2 cut(s) 513, 893
Hpy166II GTNNAC 5 cut(s) 81, 356, 487, 568, 646
Hpy188I TCNGA 7 cut(s) 147, 171, 376, 546, 883, 939, 1059
Hpy188III TCNNGA 5 cut(s) 215, 296, 593, 600, 784
Hpy8I GTNNAC 5 cut(s) 81, 356, 487, 568, 646
Hpy99I CGWCG 1 cut(s) 1012
HpyAV CCTTC 6 cut(s) 45, 243, 264, 371, 718, 926
HpyCH4III ACNGT 6 cut(s) 606, 643, 773, 860, 871, 1025
HpyCH4IV ACGT 1 cut(s) 989
HpyCH4V TGCA 6 cut(s) 22, 434, 487, 558, 576, 765
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 232, 262
HpyF3I CTNAG 5 cut(s) 28, 65, 104, 424, 1077
HpySE526I ACGT 1 cut(s) 989
Hsp92II CATG 8 cut(s) 44, 199, 580, 587, 665, 815, 928, 1095
HspAI GCGC 3 cut(s) 233, 844, 1037
KflI GGGWCCC 1 cut(s) 96
KspAI GTTAAC 1 cut(s) 568
KspI CCGCGG 1 cut(s) 1020
Kzo9I GATC 2 cut(s) 211, 298
LmnI GCTCC 1 cut(s) 37
Lsp1109I GCAGC 5 cut(s) 32, 238, 385, 400, 1021
LweI GCATC 2 cut(s) 493, 984
MaeI CTAG 3 cut(s) 309, 777, 1065
MaeII ACGT 1 cut(s) 989
MaeIII GTNAC 3 cut(s) 606, 637, 727
MalI GATC 2 cut(s) 213, 300
MboI GATC 2 cut(s) 211, 298
MboII GAAGA 5 cut(s) 79, 160, 258, 559, 746
MfeI CAATTG 1 cut(s) 1000
MhlI GDGCHC 2 cut(s) 489, 858
MluCI AATT 8 cut(s) 201, 345, 362, 471, 588, 789, 801, 1000
MlyI GAGTC 1 cut(s) 214
MmeI TCCRAC 3 cut(s) 125, 165, 736
MseI TTAA 4 cut(s) 204, 567, 890, 1096
MslI CAYNNNNRTG 3 cut(s) 482, 635, 906
MspA1I CMGCKG 1 cut(s) 1019
MspI CCGG 6 cut(s) 12, 93, 904, 995, 1031, 1071
MspR9I CCNGG 3 cut(s) 94, 369, 1031
MunI CAATTG 1 cut(s) 1000
Mva1269I GAATGC 1 cut(s) 743
MvaI CCWGG 1 cut(s) 369
MvnI CGCG 2 cut(s) 420, 1019
MwoI GCNNNNNNNGC 3 cut(s) 51, 232, 262
NciI CCSGG 2 cut(s) 94, 1031
NcoI CCATGG 2 cut(s) 583, 924
NdeII GATC 2 cut(s) 211, 298
NheI GCTAGC 1 cut(s) 776
NlaIII CATG 8 cut(s) 44, 199, 580, 587, 665, 815, 928, 1095
NlaIV GGNNCC 4 cut(s) 97, 98, 511, 922
NmeAIII GCCGAG 1 cut(s) 202
NmuCI GTSAC 1 cut(s) 637
NsbI TGCGCA 1 cut(s) 1038
NspI RCATGY 3 cut(s) 580, 815, 1095
PceI AGGCCT 1 cut(s) 313
PciI ACATGT 1 cut(s) 1091
PctI GAATGC 1 cut(s) 743
PfeI GAWTC 4 cut(s) 134, 428, 596, 704
PflMI CCANNNNNTGG 1 cut(s) 242
PinAI ACCGGT 1 cut(s) 1070
PkrI GCNGC 6 cut(s) 47, 228, 255, 400, 415, 1036
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
PpuMI RGGWCCY 1 cut(s) 96
PscI ACATGT 1 cut(s) 1091
PshBI ATTAAT 1 cut(s) 890
Psp5II RGGWCCY 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 367
PspEI GGTNACC 1 cut(s) 727
PspGI CCWGG 1 cut(s) 367
PspN4I GGNNCC 4 cut(s) 97, 98, 511, 922
PspPI GGNCC 1 cut(s) 96
PspPPI RGGWCCY 1 cut(s) 96
PstI CTGCAG 1 cut(s) 436
RseI CAYNNNNRTG 3 cut(s) 482, 635, 906
SacII CCGCGG 1 cut(s) 1020
SaqAI TTAA 4 cut(s) 204, 567, 890, 1096
SatI GCNGC 6 cut(s) 46, 227, 254, 399, 414, 1035
Sau3AI GATC 2 cut(s) 211, 298
Sau96I GGNCC 1 cut(s) 96
SchI GAGTC 1 cut(s) 214
ScrFI CCNGG 3 cut(s) 94, 369, 1031
SduI GDGCHC 2 cut(s) 489, 858
SfaNI GCATC 2 cut(s) 493, 984
SfcI CTRYAG 1 cut(s) 432
Sfr303I CCGCGG 1 cut(s) 1020
SgrBI CCGCGG 1 cut(s) 1020
SinI GGWCC 1 cut(s) 96
SmiMI CAYNNNNRTG 3 cut(s) 482, 635, 906
Sse9I AATT 8 cut(s) 201, 345, 362, 471, 588, 789, 801, 1000
SseBI AGGCCT 1 cut(s) 313
SsiI CCGC 3 cut(s) 254, 1017, 1019
SspI AATATT 1 cut(s) 894
SspMI CTAG 3 cut(s) 309, 777, 1065
StuI AGGCCT 1 cut(s) 313
StyD4I CCNGG 3 cut(s) 92, 367, 1029
StyI CCWWGG 4 cut(s) 49, 308, 583, 924
TaaI ACNGT 6 cut(s) 606, 643, 773, 860, 871, 1025
TaiI ACGT 1 cut(s) 992
TaqI TCGA 2 cut(s) 601, 978
TasI AATT 8 cut(s) 201, 345, 362, 471, 588, 789, 801, 1000
TauI GCSGC 1 cut(s) 256
TfiI GAWTC 4 cut(s) 134, 428, 596, 704
Tru1I TTAA 4 cut(s) 204, 567, 890, 1096
Tru9I TTAA 4 cut(s) 204, 567, 890, 1096
TscAI CASTG 3 cut(s) 358, 489, 706
TseFI GTSAC 1 cut(s) 637
TseI GCWGC 5 cut(s) 45, 226, 398, 413, 1034
Tsp45I GTSAC 1 cut(s) 637
TspDTI ATGAA 3 cut(s) 318, 483, 866
TspRI CASTG 3 cut(s) 358, 489, 706
Van91I CCANNNNNTGG 1 cut(s) 242
VneI GTGCAC 1 cut(s) 485
VpaK11BI GGWCC 1 cut(s) 96
VspI ATTAAT 1 cut(s) 890
XapI RAATTY 1 cut(s) 588
XceI RCATGY 3 cut(s) 580, 815, 1095
XcmI CCANNNNNNNNNTGG 1 cut(s) 964
XmaJI CCTAGG 1 cut(s) 308
XmiI GTMKAC 1 cut(s) 645
XspI CTAG 3 cut(s) 309, 777, 1065
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.