Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0009013

Physical Location & Seq

Genomic Coordinates Reverse (-)

51291402 .. 51296326

Gene Structure 4925 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG352400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGCCGCCGTCGCCGGTCTGCAACTCTCAGCTCCGGTCCACGGCCACGGGCACGGCCAGGTCGTACTAAGCTCAGCCAAGTCAACTCTCTTCATGGCGACCCCGCTCACATTTCCACTCTCCACTCCCTCCGGGAGAGCGTCGTTTTCTCGGAAACAACCCGTCGTTTTTGCTCGGAGGCTTTCAGGCTTGGAAGAGGCCATGAGAATCAAAAGATTACGCGAGAGTCAAGTTACGACAAAGGTTAGAAGAACGGTGCCATTGAGGCGTGGAAGAGTGTCACCGACACTTCCTGTTCCAGATGACATTCCGAGGCCTCCTTATGCAGCTACATCTATACTGCCAGAAATTGCCAGTGACTATCAATTTCCTGGTTCTGAAGGCATTGCTGCCATGAGAGCTGCATGTGAACTTGCTGCTCGTGTCTTAGACAATGCAGGGAAGTTAGTTAGGCCTTCAGTAACCACTAATGAAATTGACAAAGCAGTGCATCAGATGATTATTGATGCTGGTGCTTATCCCTCACCTCTTGGATATGGGGGATTTCCAAAGAGTGTGTGCACATCTGTTAACGAGTGCATGTGCCATGGAATACCTGATTCTCGTCAATTACAGGACGGAGACATCATAAACATAGATGTTACTGTCTACCTAAACGGATATCATGGAGACACATCAAAGACATTTCTTTGTGGGGAGGTCAGTGATAGTATGCAACGCCTAGTGAAGGTAACGGAAGAGTGCTTGGAAAGAGGCATAGCAGTTTGCAAGGATGGTGCTAGCTTCAAGAAAATTGGAAAGAGAATTAGTGAACATGCTGAAAAATTTGGTTATGGCGTGGTAGAACGTTTTGTTGGGCATGGTGTGGGTACCGTATTTCATTCTGAACCATTGATATTACATCACCGCAATGACCAGTCTGGTAGCATGGTTGAAGGTCAAACATTTACTATTGAACCCATCCTTACTATGGGAAGCATTGAGTGCGTAACATGGCCAGACAATTGGACAACTCTAACCGCCGATGGTAGCCCTGCTGCGCAGTTTGAGCATACCATTCTGATTACTAGAACTGGTGCTGAAATTTTAACCACATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

366

Amino Acids

39.57

Weight (kDa)

7.18

Isoelectric Point (pI)

49.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	131 - 356	4.9e-53	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13270 AT1G13270
fragaria_vesca	FvH4_4g28020
malus_domestica	MD13G1046000.v1.1 MD16G1047600.v1.1
prunus_persica	Prupe.1G306000_v2.0.a1 Prupe.1G306000_v2.0.a1 Prupe.1G306000_v2.0.a1 Prupe.1G306000_v2.0.a1
pyrus_communis	pycom13g04040 pycom16g04160
rosa_chinensis	RchiOBHm_Chr4g0435761
rosa_laevigata	RLG00000006561
rosa_multiflora	Rmu_co8005306.1_g000001 Rmu_sc0000051.1_g000022 Rmu_sc0036818.1_g000001
rosa_rugosa	Rorug04G0289400
rosa_samantha	Rh4AG343700 Rh4BG352400 Rh4CG366900 Rh4DG346300
rosa_wichuraiana	Rw4G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1041
Acc65I	GGTACC	1 cut(s)	869
AccB1I	GGYRCC	2 cut(s)	256, 869
AccBSI	CCGCTC	1 cut(s)	106
AccI	GTMKAC	1 cut(s)	648
AccII	CGCG	1 cut(s)	222
AciI	CCGC	4 cut(s)	6, 104, 907, 1020
AclI	AACGTT	1 cut(s)	847
AcoI	YGGCCR	4 cut(s)	3, 43, 55, 995
AcsI	RAATTY	2 cut(s)	824, 1083
AcuI	CTGAAG	2 cut(s)	399, 441
AfaI	GTAC	2 cut(s)	66, 871
AfiI	CCNNNNNNNGG	3 cut(s)	41, 727, 970
AflIII	ACRYGT	1 cut(s)	1094
AgsI	TTSAA	3 cut(s)	787, 935, 956
AjnI	CCWGG	2 cut(s)	57, 370
AjuI	GAANNNNNNNTTGG	2 cut(s)	837, 869
AluBI	AGCT	5 cut(s)	32, 72, 329, 401, 783
AluI	AGCT	5 cut(s)	32, 72, 329, 401, 783
Alw21I	GWGCWC	1 cut(s)	563
Alw26I	GTCTC	2 cut(s)	615, 663
Alw44I	GTGCAC	1 cut(s)	559
AoxI	GGCC	7 cut(s)	3, 43, 55, 198, 314, 452, 995
ApaLI	GTGCAC	1 cut(s)	559
ApeKI	GCWGC	5 cut(s)	326, 389, 401, 416, 1037
ApoI	RAATTY	2 cut(s)	824, 1083
Asp718I	GGTACC	1 cut(s)	869
AspLEI	GCGC	1 cut(s)	1042
AspS9I	GGNCC	1 cut(s)	37
AsuC2I	CCSGG	1 cut(s)	133
AsuHPI	GGTGA	3 cut(s)	273, 516, 896
AsuNHI	GCTAGC	1 cut(s)	779
AvaII	GGWCC	1 cut(s)	37
BaeGI	GKGCMC	2 cut(s)	54, 563
BalI	TGGCCA	1 cut(s)	997
BanI	GGYRCC	2 cut(s)	256, 869
BauI	CACGAG	1 cut(s)	420
Bbv12I	GWGCWC	1 cut(s)	563
BbvI	GCAGC	5 cut(s)	338, 376, 388, 403, 1024
BccI	CCATC	3 cut(s)	767, 968, 1019
BceAI	ACGGC	2 cut(s)	58, 70
BciT130I	CCWGG	2 cut(s)	59, 372
BcnI	CCSGG	1 cut(s)	133
BcoDI	GTCTC	2 cut(s)	615, 663
BfaI	CTAG	3 cut(s)	722, 780, 1068
BglI	GCCNNNNNGGC	1 cut(s)	265
BisI	GCNGC	6 cut(s)	6, 327, 390, 402, 417, 1038
BlpI	GCTNAGC	1 cut(s)	73
BlsI	GCNGC	6 cut(s)	7, 328, 391, 403, 418, 1039
Bme1390I	CCNGG	3 cut(s)	59, 133, 372
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	2 cut(s)	258, 871
BmrFI	CCNGG	3 cut(s)	59, 133, 372
BmsI	GCATC	2 cut(s)	496, 499
BmtI	GCTAGC	1 cut(s)	783
Bpu1102I	GCTNAGC	1 cut(s)	73
BpuMI	CCSGG	1 cut(s)	133
BsaJI	CCNNGG	4 cut(s)	40, 46, 311, 586
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 727, 970
Bse118I	RCCGGY	1 cut(s)	14
Bse1I	ACTGG	3 cut(s)	354, 916, 1078
Bse3DI	GCAATG	2 cut(s)	384, 916
BseBI	CCWGG	2 cut(s)	59, 372
BseDI	CCNNGG	4 cut(s)	40, 46, 311, 586
BseGI	GGATG	2 cut(s)	778, 960
BseLI	CCNNNNNNNGG	3 cut(s)	41, 727, 970
BseMI	GCAATG	2 cut(s)	384, 916
BseMII	CTCAG	2 cut(s)	42, 87
BseNI	ACTGG	3 cut(s)	354, 916, 1078
BseSI	GKGCMC	2 cut(s)	54, 563
BseXI	GCAGC	5 cut(s)	338, 376, 388, 403, 1024
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	7 cut(s)	5, 45, 57, 200, 316, 454, 997
BshNI	GGYRCC	2 cut(s)	256, 869
BsiHKAI	GWGCWC	1 cut(s)	563
BsiSI	CCGG	3 cut(s)	15, 35, 132
BslI	CCNNNNNNNGG	3 cut(s)	41, 727, 970
BsmAI	GTCTC	2 cut(s)	615, 663
BsnI	GGCC	7 cut(s)	5, 45, 57, 200, 316, 454, 997
Bsp1286I	GDGCHC	2 cut(s)	54, 563
Bsp1720I	GCTNAGC	1 cut(s)	73
Bsp19I	CCATGG	1 cut(s)	586
BspACI	CCGC	4 cut(s)	6, 104, 907, 1020
BspANI	GGCC	7 cut(s)	5, 45, 57, 200, 316, 454, 997
BspCNI	CTCAG	2 cut(s)	41, 86
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	2 cut(s)	258, 871
BspOI	GCTAGC	1 cut(s)	783
BspT107I	GGYRCC	2 cut(s)	256, 869
BsrBI	CCGCTC	1 cut(s)	106
BsrDI	GCAATG	2 cut(s)	384, 916
BsrFI	RCCGGY	1 cut(s)	14
BsrI	ACTGG	3 cut(s)	354, 916, 1078
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	4 cut(s)	40, 46, 311, 586
BssSI	CACGAG	1 cut(s)	420
BssT1I	CCWWGG	1 cut(s)	586
Bst2BI	CACGAG	1 cut(s)	420
Bst2UI	CCWGG	2 cut(s)	59, 372
Bst4CI	ACNGT	3 cut(s)	256, 646, 874
Bst6I	CTCTTC	4 cut(s)	95, 189, 268, 732
BstAPI	GCANNNNNTGC	1 cut(s)	984
BstC8I	GCNNGC	1 cut(s)	781
BstDEI	CTNAG	4 cut(s)	28, 68, 73, 427
BstDSI	CCRYGG	3 cut(s)	40, 46, 586
BstENI	CCTNNNNNAGG	1 cut(s)	725
BstF5I	GGATG	2 cut(s)	778, 960
BstFNI	CGCG	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	1042
BstMAI	GTCTC	2 cut(s)	615, 663
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 265, 398, 984, 1048
BstNI	CCWGG	2 cut(s)	59, 372
BstNSI	RCATGY	4 cut(s)	408, 583, 818, 1098
BstSCI	CCNGG	3 cut(s)	57, 131, 370
BstSLI	GKGCMC	2 cut(s)	54, 563
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	5 cut(s)	338, 376, 388, 403, 1024
BstXI	CCANNNNNNTGG	1 cut(s)	1005
BsuRI	GGCC	7 cut(s)	5, 45, 57, 200, 316, 454, 997
BtgI	CCRYGG	3 cut(s)	40, 46, 586
BtsCI	GGATG	2 cut(s)	778, 960
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	3 cut(s)	361, 492, 709
Cac8I	GCNNGC	1 cut(s)	781
CfoI	GCGC	1 cut(s)	1042
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	37
CseI	GACGC	1 cut(s)	129
Csp6I	GTAC	2 cut(s)	65, 870
CviQI	GTAC	2 cut(s)	65, 870
DdeI	CTNAG	4 cut(s)	28, 68, 73, 427
EaeI	YGGCCR	4 cut(s)	3, 43, 55, 995
Eam1104I	CTCTTC	4 cut(s)	95, 189, 268, 732
EarI	CTCTTC	4 cut(s)	95, 189, 268, 732
Eco130I	CCWWGG	1 cut(s)	586
Eco147I	AGGCCT	2 cut(s)	316, 454
Eco32I	GATATC	1 cut(s)	662
Eco47I	GGWCC	1 cut(s)	37
Eco57I	CTGAAG	2 cut(s)	399, 441
EcoNI	CCTNNNNNAGG	1 cut(s)	725
EcoRII	CCWGG	2 cut(s)	57, 370
EcoRV	GATATC	1 cut(s)	662
EcoT14I	CCWWGG	1 cut(s)	586
ErhI	CCWWGG	1 cut(s)	586
FauI	CCCGC	1 cut(s)	111
FblI	GTMKAC	1 cut(s)	648
Fnu4HI	GCNGC	6 cut(s)	6, 327, 390, 402, 417, 1038
FokI	GGATG	2 cut(s)	785, 947
Fsp4HI	GCNGC	6 cut(s)	6, 327, 390, 402, 417, 1038
FspBI	CTAG	3 cut(s)	722, 780, 1068
FspI	TGCGCA	1 cut(s)	1041
GlaI	GCGC	1 cut(s)	1041
GluI	GCNGC	6 cut(s)	6, 327, 390, 402, 417, 1038
HaeIII	GGCC	7 cut(s)	5, 45, 57, 200, 316, 454, 997
HapII	CCGG	3 cut(s)	15, 35, 132
HgaI	GACGC	1 cut(s)	129
HhaI	GCGC	1 cut(s)	1042
Hin6I	GCGC	1 cut(s)	1040
HinP1I	GCGC	1 cut(s)	1040
HincII	GTYRAC	2 cut(s)	84, 571
HindII	GTYRAC	2 cut(s)	84, 571
HinfI	GANTC	3 cut(s)	207, 226, 599
HpaI	GTTAAC	1 cut(s)	571
HpaII	CCGG	3 cut(s)	15, 35, 132
HphI	GGTGA	3 cut(s)	273, 516, 896
Hpy166II	GTNNAC	7 cut(s)	40, 84, 410, 561, 571, 649, 812
Hpy188I	TCNGA	7 cut(s)	153, 177, 312, 379, 495, 886, 1062
Hpy188III	TCNNGA	2 cut(s)	299, 787
Hpy8I	GTNNAC	7 cut(s)	40, 84, 410, 561, 571, 649, 812
Hpy99I	CGWCG	3 cut(s)	14, 145, 167
HpyAV	CCTTC	4 cut(s)	374, 465, 721, 929
HpyCH4III	ACNGT	3 cut(s)	256, 646, 874
HpyCH4IV	ACGT	1 cut(s)	847
HpyCH4V	TGCA	9 cut(s)	22, 326, 404, 437, 490, 561, 579, 715, 768
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 265, 398, 984, 1048
HpyF3I	CTNAG	4 cut(s)	28, 68, 73, 427
HpySE526I	ACGT	1 cut(s)	847
HspAI	GCGC	1 cut(s)	1040
KpnI	GGTACC	1 cut(s)	873
KspAI	GTTAAC	1 cut(s)	571
LmnI	GCTCC	1 cut(s)	37
Lsp1109I	GCAGC	5 cut(s)	338, 376, 388, 403, 1024
LweI	GCATC	2 cut(s)	496, 499
MaeI	CTAG	3 cut(s)	722, 780, 1068
MaeII	ACGT	1 cut(s)	847
MaeIII	GTNAC	7 cut(s)	232, 279, 356, 460, 640, 730, 988
MbiI	CCGCTC	1 cut(s)	106
MboII	GAAGA	5 cut(s)	82, 206, 261, 285, 749
MfeI	CAATTG	1 cut(s)	1003
MhlI	GDGCHC	2 cut(s)	54, 563
MlsI	TGGCCA	1 cut(s)	997
MluCI	AATT	9 cut(s)	348, 365, 474, 608, 792, 804, 824, 1003, 1083
MluNI	TGGCCA	1 cut(s)	997
MlyI	GAGTC	1 cut(s)	235
Mox20I	TGGCCA	1 cut(s)	997
MscI	TGGCCA	1 cut(s)	997
MseI	TTAA	2 cut(s)	570, 1088
MslI	CAYNNNNRTG	1 cut(s)	909
Msp20I	TGGCCA	1 cut(s)	997
MspI	CCGG	3 cut(s)	15, 35, 132
MspR9I	CCNGG	3 cut(s)	59, 133, 372
MunI	CAATTG	1 cut(s)	1003
MvaI	CCWGG	2 cut(s)	59, 372
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	5 cut(s)	11, 265, 398, 984, 1048
NciI	CCSGG	1 cut(s)	133
NcoI	CCATGG	1 cut(s)	586
NheI	GCTAGC	1 cut(s)	779
NlaIV	GGNNCC	2 cut(s)	258, 871
NmuCI	GTSAC	2 cut(s)	279, 356
NsbI	TGCGCA	1 cut(s)	1041
NspI	RCATGY	4 cut(s)	408, 583, 818, 1098
PceI	AGGCCT	2 cut(s)	316, 454
PciI	ACATGT	1 cut(s)	1094
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PfeI	GAWTC	2 cut(s)	207, 599
PfoI	TCCNGGA	1 cut(s)	131
PkrI	GCNGC	6 cut(s)	7, 328, 391, 403, 418, 1039
PleI	GAGTC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	234
PscI	ACATGT	1 cut(s)	1094
Psp1406I	AACGTT	1 cut(s)	847
Psp6I	CCWGG	2 cut(s)	57, 370
PspGI	CCWGG	2 cut(s)	57, 370
PspN4I	GGNNCC	2 cut(s)	258, 871
PspPI	GGNCC	1 cut(s)	37
RsaI	GTAC	2 cut(s)	66, 871
RsaNI	GTAC	2 cut(s)	65, 870
RseI	CAYNNNNRTG	1 cut(s)	909
SaqAI	TTAA	2 cut(s)	570, 1088
SatI	GCNGC	6 cut(s)	6, 327, 390, 402, 417, 1038
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	1 cut(s)	235
ScrFI	CCNGG	3 cut(s)	59, 133, 372
SduI	GDGCHC	2 cut(s)	54, 563
SfaNI	GCATC	2 cut(s)	496, 499
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	909
Sse9I	AATT	9 cut(s)	348, 365, 474, 608, 792, 804, 824, 1003, 1083
SseBI	AGGCCT	2 cut(s)	316, 454
SsiI	CCGC	4 cut(s)	6, 104, 907, 1020
SspMI	CTAG	3 cut(s)	722, 780, 1068
StuI	AGGCCT	2 cut(s)	316, 454
StyD4I	CCNGG	3 cut(s)	57, 131, 370
StyI	CCWWGG	1 cut(s)	586
TaaI	ACNGT	3 cut(s)	256, 646, 874
TaiI	ACGT	1 cut(s)	850
TasI	AATT	9 cut(s)	348, 365, 474, 608, 792, 804, 824, 1003, 1083
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	207, 599
Tru1I	TTAA	2 cut(s)	570, 1088
Tru9I	TTAA	2 cut(s)	570, 1088
TscAI	CASTG	3 cut(s)	361, 492, 709
TseFI	GTSAC	2 cut(s)	279, 356
TseI	GCWGC	5 cut(s)	326, 389, 401, 416, 1037
Tsp45I	GTSAC	2 cut(s)	279, 356
TspDTI	ATGAA	3 cut(s)	82, 486, 869
TspGWI	ACGGA	3 cut(s)	633, 672, 749
TspRI	CASTG	3 cut(s)	361, 492, 709
VneI	GTGCAC	1 cut(s)	559
VpaK11BI	GGWCC	1 cut(s)	37
XagI	CCTNNNNNAGG	1 cut(s)	725
XapI	RAATTY	2 cut(s)	824, 1083
XceI	RCATGY	4 cut(s)	408, 583, 818, 1098
XcmI	CCANNNNNNNNNTGG	1 cut(s)	967
XmiI	GTMKAC	1 cut(s)	648
XspI	CTAG	3 cut(s)	722, 780, 1068

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.