Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009013

Physical Location & Seq

Genomic Coordinates Reverse (-)

28790250 .. 28796694

Gene Structure 6445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g28020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGCCGCCGTCGCCGGTCTGCAACTCTCCGCTCCGGTCCACGGCCACGCCTCCGTAAGCTCCGCCAGCTCAGCTCTCTTCAAGGCGTTCCCGCTCACATTTCCGTTCTCCTCTCCCTCCGGAAGAGCGTCGTTTTCTCGGAAACAACTCGTCGTTTTTGCTCGCAAGCTTTCCGGCTTGGAAGAGGCCATGAGAATCAAAAGAATGCGCGAGAGTAAGGTTATGACAAAGGGTAAGAGAAGGGTGCCATTGAAGCGTGGGAGGGTGTCTCCGACGCTTCCTGTTCCAGATGACATTCCAAGGCCTCCTTATGCAGCTACATCTATACTGCCAGAAATTGCCAGTGAGTATCAGTTTCCTGGTTTGGAAGGTATTGCCGCCATGAGAGCTGCATGTGAACTTGCTGCTCGCGTCTTAGACAACGCGGGAAAGTTAGTTAGGCCTTCGGTAACCACTAATGAAATTGACAAAGCAGTGCACCAGATGATTATTGATGCTGGTGCTTATCCCTCACCTCTTGGCTATGGAGGATTTCCAAAGAGTGTATGCACATCTGTTAATGAGTGCATGTGCCATGGAATACCTGATTCTCGTCAGTTACAGGATGGAGACATCATAAACATAGATGTTACTGTCTACCTAAATGGATACCATGGAGACACCTCAAAGACATTTCTTTGTGGGGAGGTCAGTGATAGTATGCAACGCCTAGTGAAGGTAACGGAAGAGTGCTTGGAAAGAGGCATAGCAGTTTGCAAGGATGGTGCTAGCTTCAAGAAGATTGGAAAGAGAATTAGTGAACATGCTGAAAAATTTGGTTATGGCGTGGTAGAGCGTTTTGTTGGGCATGGTGTGGGTACCGTATTTCATTCTGAACCATTGATATTACATCACCGTAATGACCAGTCTGGTAGCATGGTTGAGGGTCAAACTTTTACTATCGAACCCATTCTTACTATGGGAAGCATCGAGTGCGTAACATGGCCAGACAACTGGACAACTCTAACCGCCGATGGTAGCCCTGCAGCGCAGTTTGAGCATACCATTCTGATTACTAGAACTGGCGCTGAAATTTTAACGACATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

363

Amino Acids

39.16

Weight (kDa)

8.05

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	127 - 352	4.7e-53	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13270 AT1G13270
fragaria_vesca	FvH4_4g28020
malus_domestica	MD13G1046000.v1.1 MD16G1047600.v1.1
prunus_persica	Prupe.1G306000_v2.0.a1 Prupe.1G306000_v2.0.a1 Prupe.1G306000_v2.0.a1 Prupe.1G306000_v2.0.a1
pyrus_communis	pycom13g04040 pycom16g04160
rosa_chinensis	RchiOBHm_Chr4g0435761
rosa_laevigata	RLG00000006561
rosa_multiflora	Rmu_co8005306.1_g000001 Rmu_sc0000051.1_g000022 Rmu_sc0036818.1_g000001
rosa_rugosa	Rorug04G0289400
rosa_samantha	Rh4AG343700 Rh4BG352400 Rh4CG366900 Rh4DG346300
rosa_wichuraiana	Rw4G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	857
AccB1I	GGYRCC	2 cut(s)	244, 857
AccBSI	CCGCTC	2 cut(s)	32, 94
AccI	GTMKAC	1 cut(s)	636
AccII	CGCG	3 cut(s)	210, 411, 425
AccIII	TCCGGA	1 cut(s)	119
AciI	CCGC	7 cut(s)	6, 30, 63, 92, 378, 425, 1008
AcoI	YGGCCR	3 cut(s)	3, 43, 983
AcsI	RAATTY	2 cut(s)	812, 1071
AfaI	GTAC	1 cut(s)	859
AfiI	CCNNNNNNNGG	2 cut(s)	41, 715
AflIII	ACRYGT	1 cut(s)	1082
AgsI	TTSAA	3 cut(s)	82, 253, 775
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	7 cut(s)	60, 69, 74, 169, 317, 389, 771
AluI	AGCT	7 cut(s)	60, 69, 74, 169, 317, 389, 771
Alw21I	GWGCWC	1 cut(s)	480
Alw26I	GTCTC	3 cut(s)	273, 603, 651
Alw44I	GTGCAC	1 cut(s)	476
Aor13HI	TCCGGA	1 cut(s)	119
AoxI	GGCC	6 cut(s)	3, 43, 186, 302, 440, 983
ApaLI	GTGCAC	1 cut(s)	476
ApeKI	GCWGC	4 cut(s)	314, 389, 404, 1025
ApoI	RAATTY	2 cut(s)	812, 1071
Asp700I	GAANNNNTTC	1 cut(s)	948
Asp718I	GGTACC	1 cut(s)	857
AspLEI	GCGC	3 cut(s)	210, 1030, 1067
AspS9I	GGNCC	1 cut(s)	37
AsuHPI	GGTGA	2 cut(s)	504, 884
AsuNHI	GCTAGC	1 cut(s)	767
AvaII	GGWCC	1 cut(s)	37
BaeGI	GKGCMC	1 cut(s)	480
BalI	TGGCCA	1 cut(s)	985
BanI	GGYRCC	2 cut(s)	244, 857
Bbv12I	GWGCWC	1 cut(s)	480
BbvI	GCAGC	4 cut(s)	326, 376, 391, 1037
BccI	CCATC	3 cut(s)	599, 755, 1007
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	1 cut(s)	360
BciVI	GTATCC	1 cut(s)	641
BcoDI	GTCTC	3 cut(s)	273, 603, 651
BfaI	CTAG	3 cut(s)	710, 768, 1056
BfmI	CTRYAG	1 cut(s)	1023
BfoI	RGCGCY	1 cut(s)	1068
BfuI	GTATCC	1 cut(s)	641
BisI	GCNGC	6 cut(s)	6, 315, 378, 390, 405, 1026
BlpI	GCTNAGC	1 cut(s)	70
BlsI	GCNGC	6 cut(s)	7, 316, 379, 391, 406, 1027
Bme1390I	CCNGG	1 cut(s)	360
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	2 cut(s)	246, 859
BmrFI	CCNGG	1 cut(s)	360
BmsI	GCATC	2 cut(s)	484, 975
BmtI	GCTAGC	1 cut(s)	771
BplI	GAGNNNNNCTC	2 cut(s)	253, 285
Bpu1102I	GCTNAGC	1 cut(s)	70
BsaJI	CCNNGG	4 cut(s)	40, 299, 574, 652
BsaWI	WCCGGW	2 cut(s)	34, 119
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 715
Bse118I	RCCGGY	1 cut(s)	14
Bse1I	ACTGG	4 cut(s)	342, 904, 998, 1066
BseAI	TCCGGA	1 cut(s)	119
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	4 cut(s)	40, 299, 574, 652
BseGI	GGATG	2 cut(s)	610, 766
BseLI	CCNNNNNNNGG	2 cut(s)	41, 715
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	4 cut(s)	342, 904, 998, 1066
BseRI	GAGGAG	1 cut(s)	100
BseSI	GKGCMC	1 cut(s)	480
BseXI	GCAGC	4 cut(s)	326, 376, 391, 1037
Bsh1236I	CGCG	3 cut(s)	210, 411, 425
BshFI	GGCC	6 cut(s)	5, 45, 188, 304, 442, 985
BshNI	GGYRCC	2 cut(s)	244, 857
BsiHKAI	GWGCWC	1 cut(s)	480
BsiSI	CCGG	4 cut(s)	15, 35, 120, 174
BslI	CCNNNNNNNGG	2 cut(s)	41, 715
BsmAI	GTCTC	3 cut(s)	273, 603, 651
BsmI	GAATGC	1 cut(s)	210
BsnI	GGCC	6 cut(s)	5, 45, 188, 304, 442, 985
Bsp1286I	GDGCHC	1 cut(s)	480
Bsp13I	TCCGGA	1 cut(s)	119
Bsp1720I	GCTNAGC	1 cut(s)	70
Bsp19I	CCATGG	2 cut(s)	574, 652
BspACI	CCGC	7 cut(s)	6, 30, 63, 92, 378, 425, 1008
BspANI	GGCC	6 cut(s)	5, 45, 188, 304, 442, 985
BspCNI	CTCAG	1 cut(s)	83
BspEI	TCCGGA	1 cut(s)	119
BspFNI	CGCG	3 cut(s)	210, 411, 425
BspLI	GGNNCC	2 cut(s)	246, 859
BspMAI	CTGCAG	1 cut(s)	1027
BspOI	GCTAGC	1 cut(s)	771
BspQI	GCTCTTC	1 cut(s)	118
BspT107I	GGYRCC	2 cut(s)	244, 857
BsrBI	CCGCTC	2 cut(s)	32, 94
BsrFI	RCCGGY	1 cut(s)	14
BsrI	ACTGG	4 cut(s)	342, 904, 998, 1066
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	4 cut(s)	40, 299, 574, 652
BssT1I	CCWWGG	3 cut(s)	299, 574, 652
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	3 cut(s)	634, 862, 896
Bst6I	CTCTTC	4 cut(s)	83, 118, 177, 720
BstAPI	GCANNNNNTGC	1 cut(s)	972
BstC8I	GCNNGC	5 cut(s)	67, 163, 167, 409, 769
BstDEI	CTNAG	2 cut(s)	70, 415
BstDSI	CCRYGG	3 cut(s)	40, 574, 652
BstEII	GGTNACC	1 cut(s)	448
BstENI	CCTNNNNNAGG	1 cut(s)	713
BstF5I	GGATG	2 cut(s)	610, 766
BstFNI	CGCG	3 cut(s)	210, 411, 425
BstH2I	RGCGCY	1 cut(s)	1068
BstHHI	GCGC	3 cut(s)	210, 1030, 1067
BstMAI	GTCTC	3 cut(s)	273, 603, 651
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 66, 71, 253, 386, 972, 1036
BstNI	CCWGG	1 cut(s)	360
BstNSI	RCATGY	4 cut(s)	396, 571, 806, 1086
BstPI	GGTNACC	1 cut(s)	448
BstSCI	CCNGG	1 cut(s)	358
BstSFI	CTRYAG	1 cut(s)	1023
BstSLI	GKGCMC	1 cut(s)	480
BstUI	CGCG	3 cut(s)	210, 411, 425
BstV1I	GCAGC	4 cut(s)	326, 376, 391, 1037
BstXI	CCANNNNNNTGG	1 cut(s)	993
BsuI	GTATCC	1 cut(s)	641
BsuRI	GGCC	6 cut(s)	5, 45, 188, 304, 442, 985
BtgI	CCRYGG	3 cut(s)	40, 574, 652
BtsCI	GGATG	2 cut(s)	610, 766
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	3 cut(s)	349, 480, 697
Cac8I	GCNNGC	5 cut(s)	67, 163, 167, 409, 769
CfoI	GCGC	3 cut(s)	210, 1030, 1067
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	37
CseI	GACGC	3 cut(s)	117, 283, 400
Csp6I	GTAC	1 cut(s)	858
CviQI	GTAC	1 cut(s)	858
DdeI	CTNAG	2 cut(s)	70, 415
EaeI	YGGCCR	3 cut(s)	3, 43, 983
Eam1104I	CTCTTC	4 cut(s)	83, 118, 177, 720
EarI	CTCTTC	4 cut(s)	83, 118, 177, 720
EciI	GGCGGA	1 cut(s)	52
Eco130I	CCWWGG	3 cut(s)	299, 574, 652
Eco147I	AGGCCT	2 cut(s)	304, 442
Eco47I	GGWCC	1 cut(s)	37
Eco91I	GGTNACC	1 cut(s)	448
EcoNI	CCTNNNNNAGG	1 cut(s)	713
EcoO65I	GGTNACC	1 cut(s)	448
EcoRII	CCWGG	1 cut(s)	358
EcoT14I	CCWWGG	3 cut(s)	299, 574, 652
ErhI	CCWWGG	3 cut(s)	299, 574, 652
FalI	AAGNNNNNCTT	2 cut(s)	292, 324
FauI	CCCGC	2 cut(s)	99, 418
FblI	GTMKAC	1 cut(s)	636
Fnu4HI	GCNGC	6 cut(s)	6, 315, 378, 390, 405, 1026
FokI	GGATG	2 cut(s)	617, 773
Fsp4HI	GCNGC	6 cut(s)	6, 315, 378, 390, 405, 1026
FspBI	CTAG	3 cut(s)	710, 768, 1056
GlaI	GCGC	3 cut(s)	209, 1029, 1066
GluI	GCNGC	6 cut(s)	6, 315, 378, 390, 405, 1026
HaeII	RGCGCY	1 cut(s)	1068
HaeIII	GGCC	6 cut(s)	5, 45, 188, 304, 442, 985
HapII	CCGG	4 cut(s)	15, 35, 120, 174
HgaI	GACGC	3 cut(s)	117, 283, 400
HhaI	GCGC	3 cut(s)	210, 1030, 1067
Hin6I	GCGC	3 cut(s)	208, 1028, 1065
HinP1I	GCGC	3 cut(s)	208, 1028, 1065
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	2 cut(s)	195, 587
HpaII	CCGG	4 cut(s)	15, 35, 120, 174
HphI	GGTGA	2 cut(s)	504, 884
Hpy166II	GTNNAC	5 cut(s)	40, 398, 478, 637, 800
Hpy188I	TCNGA	4 cut(s)	141, 273, 874, 1050
Hpy188III	TCNNGA	3 cut(s)	120, 287, 775
Hpy8I	GTNNAC	5 cut(s)	40, 398, 478, 637, 800
Hpy99I	CGWCG	4 cut(s)	14, 133, 155, 277
HpyAV	CCTTC	4 cut(s)	234, 362, 453, 709
HpyCH4III	ACNGT	3 cut(s)	634, 862, 896
HpyCH4V	TGCA	9 cut(s)	22, 314, 392, 478, 549, 567, 703, 756, 1025
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 66, 71, 253, 386, 972, 1036
HpyF3I	CTNAG	2 cut(s)	70, 415
HspAI	GCGC	3 cut(s)	208, 1028, 1065
Kpn2I	TCCGGA	1 cut(s)	119
KpnI	GGTACC	1 cut(s)	861
LguI	GCTCTTC	1 cut(s)	118
LmnI	GCTCC	2 cut(s)	37, 65
Lsp1109I	GCAGC	4 cut(s)	326, 376, 391, 1037
LweI	GCATC	2 cut(s)	484, 975
MaeI	CTAG	3 cut(s)	710, 768, 1056
MaeIII	GTNAC	5 cut(s)	448, 597, 628, 718, 976
MbiI	CCGCTC	2 cut(s)	32, 94
MboII	GAAGA	5 cut(s)	70, 135, 194, 737, 790
MhlI	GDGCHC	1 cut(s)	480
MlsI	TGGCCA	1 cut(s)	985
MluCI	AATT	5 cut(s)	336, 462, 792, 812, 1071
MluNI	TGGCCA	1 cut(s)	985
MmeI	TCCRAC	1 cut(s)	296
Mox20I	TGGCCA	1 cut(s)	985
MroI	TCCGGA	1 cut(s)	119
MroXI	GAANNNNTTC	1 cut(s)	948
MscI	TGGCCA	1 cut(s)	985
MseI	TTAA	2 cut(s)	558, 1076
MslI	CAYNNNNRTG	1 cut(s)	897
Msp20I	TGGCCA	1 cut(s)	985
MspI	CCGG	4 cut(s)	15, 35, 120, 174
MspR9I	CCNGG	1 cut(s)	360
Mva1269I	GAATGC	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	360
MvnI	CGCG	3 cut(s)	210, 411, 425
MwoI	GCNNNNNNNGC	7 cut(s)	11, 66, 71, 253, 386, 972, 1036
NcoI	CCATGG	2 cut(s)	574, 652
NheI	GCTAGC	1 cut(s)	767
NlaIV	GGNNCC	2 cut(s)	246, 859
NspI	RCATGY	4 cut(s)	396, 571, 806, 1086
PceI	AGGCCT	2 cut(s)	304, 442
PciI	ACATGT	1 cut(s)	1082
PciSI	GCTCTTC	1 cut(s)	118
PctI	GAATGC	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	948
PfeI	GAWTC	2 cut(s)	195, 587
PkrI	GCNGC	6 cut(s)	7, 316, 379, 391, 406, 1027
PscI	ACATGT	1 cut(s)	1082
Psp6I	CCWGG	1 cut(s)	358
PspEI	GGTNACC	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	2 cut(s)	246, 859
PspPI	GGNCC	1 cut(s)	37
PstI	CTGCAG	1 cut(s)	1027
RsaI	GTAC	1 cut(s)	859
RsaNI	GTAC	1 cut(s)	858
RseI	CAYNNNNRTG	1 cut(s)	897
SapI	GCTCTTC	1 cut(s)	118
SaqAI	TTAA	2 cut(s)	558, 1076
SatI	GCNGC	6 cut(s)	6, 315, 378, 390, 405, 1026
Sau96I	GGNCC	1 cut(s)	37
ScrFI	CCNGG	1 cut(s)	360
SduI	GDGCHC	1 cut(s)	480
SfaNI	GCATC	2 cut(s)	484, 975
SfcI	CTRYAG	1 cut(s)	1023
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	897
Sse9I	AATT	5 cut(s)	336, 462, 792, 812, 1071
SseBI	AGGCCT	2 cut(s)	304, 442
SsiI	CCGC	7 cut(s)	6, 30, 63, 92, 378, 425, 1008
SspMI	CTAG	3 cut(s)	710, 768, 1056
StuI	AGGCCT	2 cut(s)	304, 442
StyD4I	CCNGG	1 cut(s)	358
StyI	CCWWGG	3 cut(s)	299, 574, 652
TaaI	ACNGT	3 cut(s)	634, 862, 896
TaqI	TCGA	2 cut(s)	942, 969
TasI	AATT	5 cut(s)	336, 462, 792, 812, 1071
TauI	GCSGC	2 cut(s)	8, 380
TfiI	GAWTC	2 cut(s)	195, 587
Tru1I	TTAA	2 cut(s)	558, 1076
Tru9I	TTAA	2 cut(s)	558, 1076
TscAI	CASTG	3 cut(s)	349, 480, 697
TseI	GCWGC	4 cut(s)	314, 389, 404, 1025
TspDTI	ATGAA	2 cut(s)	474, 857
TspGWI	ACGGA	3 cut(s)	43, 93, 737
TspRI	CASTG	3 cut(s)	349, 480, 697
VneI	GTGCAC	1 cut(s)	476
VpaK11BI	GGWCC	1 cut(s)	37
XagI	CCTNNNNNAGG	1 cut(s)	713
XapI	RAATTY	2 cut(s)	812, 1071
XceI	RCATGY	4 cut(s)	396, 571, 806, 1086
XcmI	CCANNNNNNNNNTGG	1 cut(s)	955
XmiI	GTMKAC	1 cut(s)	636
XmnI	GAANNNNTTC	1 cut(s)	948
XspI	CTAG	3 cut(s)	710, 768, 1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.