Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0009013

Physical Location & Seq

Genomic Coordinates Reverse (-)

56681366 .. 56685682

Gene Structure 4317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G030010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGCCGCCGTCGCCGGTCTGCAACTCTCAGCTCCGGTCCACGGCCAGGTCGTACTAACCTCAGCCAAGTCAACTCTCTTCATGGCGACCCCGCTCACATTTCCACTCTCCGCTCCCTCCGGAAGGGCGTCGTTTTCTCGGAAACAACTCGTCGTTTTTGCTCGGAGGCTTTCAGGCTTGGAAGAGGCCATGAGAATCAAAAGATTACGCGAGAGTCAAGTTACGACAAAGGTTAGAAGAACGGTGCCATTGAGGCGTGGAAGAGTGTCACCGACACTTCCTGTTCCAGATGACATTCCGAGGCCTCCTTATGCAGCTACATCTGTACTGCCAGAAATTGCCAGTGACTATCAATTTCCTGGTTCTGAAGGCATTGCCGCCATGAGAGCTGCATGTGAACTTGCTGCTCGTGTCTTAGACAACGCAGGGAAGTTAGTTAGGCCTTCAGTAACCACTAATGAAATTGACAAAGCAGTGCATCAGATGATTATTGATGCTGGTGCTTATCCCTCACCTCTTGGATATGGGGGATTTCCAAAGAGTGTGTGCACATCTGTTAACGAGTGCATGTGCCATGGAATACCTGATTCTCGTCAATTACAGGACGGAGACATCATAAACATAGATGTTACTGTCTACCTAAACGGATATCATGGAGACACATCAAAGACATTTCTTGTGGGGAGGTCAGTGATAGTAACGGAAGAGTGCTTGGAAAGAGGCATAGCAGTTTGCAAGGATGGTGCTAGCTTCAAGAAAATTGGAAAGAGAATTAGTGAACATGCTGAAAAATTTGGTTATGGCGTGGTAGAACGTTTTGTTGGGCATGGTGTGGGTACCGTATTTCATTCTGAACCATTGATATTACATCACCGCAATGACCAGTCTGGCAGCATGGTTGAAGGTCAAACATTTACTATTGGTGAAACCCATCCTTACTTGGGAAGCATTGAGTGCGTAACATGGCCGGACAATTGGACAACTCTAACCGCCGATGGTAGCCCTGCTGCGCAGTTTGAGCATACCATTCTGATTACTAGAACTGGTGCTGAAATTTTAACCACATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

356

Amino Acids

38.46

Weight (kDa)

7.65

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	127 - 346	1.4e-45	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13270 AT1G13270
fragaria_vesca	FvH4_4g28020
malus_domestica	MD13G1046000.v1.1 MD16G1047600.v1.1
prunus_persica	Prupe.1G306000_v2.0.a1 Prupe.1G306000_v2.0.a1 Prupe.1G306000_v2.0.a1 Prupe.1G306000_v2.0.a1
pyrus_communis	pycom13g04040 pycom16g04160
rosa_chinensis	RchiOBHm_Chr4g0435761
rosa_laevigata	RLG00000006561
rosa_multiflora	Rmu_co8005306.1_g000001 Rmu_sc0000051.1_g000022 Rmu_sc0036818.1_g000001
rosa_rugosa	Rorug04G0289400
rosa_samantha	Rh4AG343700 Rh4BG352400 Rh4CG366900 Rh4DG346300
rosa_wichuraiana	Rw4G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1011
Acc65I	GGTACC	1 cut(s)	836
AccB1I	GGYRCC	2 cut(s)	244, 836
AccBSI	CCGCTC	2 cut(s)	94, 113
AccI	GTMKAC	1 cut(s)	636
AccII	CGCG	1 cut(s)	210
AccIII	TCCGGA	1 cut(s)	119
AciI	CCGC	6 cut(s)	6, 92, 111, 378, 874, 990
AclI	AACGTT	1 cut(s)	814
AcoI	YGGCCR	3 cut(s)	3, 43, 965
AcsI	RAATTY	2 cut(s)	791, 1053
AcuI	CTGAAG	2 cut(s)	387, 429
AcyI	GRCGYC	1 cut(s)	128
AfaI	GTAC	3 cut(s)	54, 327, 838
AfiI	CCNNNNNNNGG	4 cut(s)	41, 46, 123, 941
AflIII	ACRYGT	1 cut(s)	1064
AgsI	TTSAA	2 cut(s)	754, 902
AjnI	CCWGG	2 cut(s)	45, 358
AjuI	GAANNNNNNNTTGG	2 cut(s)	804, 836
AluBI	AGCT	4 cut(s)	32, 317, 389, 750
AluI	AGCT	4 cut(s)	32, 317, 389, 750
Alw21I	GWGCWC	1 cut(s)	551
Alw26I	GTCTC	2 cut(s)	603, 651
Alw44I	GTGCAC	1 cut(s)	547
Aor13HI	TCCGGA	1 cut(s)	119
AoxI	GGCC	6 cut(s)	3, 43, 186, 302, 440, 965
ApaLI	GTGCAC	1 cut(s)	547
ApeKI	GCWGC	5 cut(s)	314, 389, 404, 891, 1007
ApoI	RAATTY	2 cut(s)	791, 1053
Asp718I	GGTACC	1 cut(s)	836
AspLEI	GCGC	1 cut(s)	1012
AspS9I	GGNCC	1 cut(s)	37
AsuHPI	GGTGA	4 cut(s)	261, 504, 863, 935
AsuNHI	GCTAGC	1 cut(s)	746
AvaII	GGWCC	1 cut(s)	37
BaeGI	GKGCMC	1 cut(s)	551
BanI	GGYRCC	2 cut(s)	244, 836
BauI	CACGAG	1 cut(s)	408
Bbv12I	GWGCWC	1 cut(s)	551
BbvCI	CCTCAGC	1 cut(s)	61
BbvI	GCAGC	5 cut(s)	326, 376, 391, 903, 994
BccI	CCATC	3 cut(s)	734, 939, 989
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	2 cut(s)	47, 360
BcoDI	GTCTC	2 cut(s)	603, 651
BfaI	CTAG	2 cut(s)	747, 1038
BglI	GCCNNNNNGGC	1 cut(s)	253
BisI	GCNGC	7 cut(s)	6, 315, 378, 390, 405, 892, 1008
BlsI	GCNGC	7 cut(s)	7, 316, 379, 391, 406, 893, 1009
Bme1390I	CCNGG	2 cut(s)	47, 360
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	2 cut(s)	246, 838
BmrFI	CCNGG	2 cut(s)	47, 360
BmsI	GCATC	2 cut(s)	484, 487
BmtI	GCTAGC	1 cut(s)	750
Bpu10I	CCTNAGC	1 cut(s)	61
BsaHI	GRCGYC	1 cut(s)	128
BsaJI	CCNNGG	3 cut(s)	40, 299, 574
BsaWI	WCCGGW	2 cut(s)	34, 119
Bsc4I	CCNNNNNNNGG	4 cut(s)	41, 46, 123, 941
Bse118I	RCCGGY	1 cut(s)	14
Bse1I	ACTGG	3 cut(s)	342, 883, 1048
Bse3DI	GCAATG	2 cut(s)	372, 883
BseAI	TCCGGA	1 cut(s)	119
BseBI	CCWGG	2 cut(s)	47, 360
BseDI	CCNNGG	3 cut(s)	40, 299, 574
BseGI	GGATG	2 cut(s)	745, 931
BseLI	CCNNNNNNNGG	4 cut(s)	41, 46, 123, 941
BseMI	GCAATG	2 cut(s)	372, 883
BseMII	CTCAG	2 cut(s)	42, 75
BseNI	ACTGG	3 cut(s)	342, 883, 1048
BseSI	GKGCMC	1 cut(s)	551
BseXI	GCAGC	5 cut(s)	326, 376, 391, 903, 994
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	6 cut(s)	5, 45, 188, 304, 442, 967
BshNI	GGYRCC	2 cut(s)	244, 836
BsiHKAI	GWGCWC	1 cut(s)	551
BsiSI	CCGG	4 cut(s)	15, 35, 120, 968
BslI	CCNNNNNNNGG	4 cut(s)	41, 46, 123, 941
BsmAI	GTCTC	2 cut(s)	603, 651
BsnI	GGCC	6 cut(s)	5, 45, 188, 304, 442, 967
Bsp1286I	GDGCHC	1 cut(s)	551
Bsp13I	TCCGGA	1 cut(s)	119
Bsp19I	CCATGG	1 cut(s)	574
BspACI	CCGC	6 cut(s)	6, 92, 111, 378, 874, 990
BspANI	GGCC	6 cut(s)	5, 45, 188, 304, 442, 967
BspCNI	CTCAG	2 cut(s)	41, 74
BspEI	TCCGGA	1 cut(s)	119
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	2 cut(s)	246, 838
BspOI	GCTAGC	1 cut(s)	750
BspT107I	GGYRCC	2 cut(s)	244, 836
BsrBI	CCGCTC	2 cut(s)	94, 113
BsrDI	GCAATG	2 cut(s)	372, 883
BsrFI	RCCGGY	1 cut(s)	14
BsrI	ACTGG	3 cut(s)	342, 883, 1048
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	3 cut(s)	40, 299, 574
BssNI	GRCGYC	1 cut(s)	128
BssSI	CACGAG	1 cut(s)	408
BssT1I	CCWWGG	1 cut(s)	574
Bst2BI	CACGAG	1 cut(s)	408
Bst2UI	CCWGG	2 cut(s)	47, 360
Bst4CI	ACNGT	3 cut(s)	244, 634, 841
Bst6I	CTCTTC	4 cut(s)	83, 177, 256, 699
BstACI	GRCGYC	1 cut(s)	128
BstAPI	GCANNNNNTGC	1 cut(s)	954
BstC8I	GCNNGC	1 cut(s)	748
BstDEI	CTNAG	3 cut(s)	28, 61, 415
BstDSI	CCRYGG	2 cut(s)	40, 574
BstENI	CCTNNNNNAGG	1 cut(s)	121
BstF5I	GGATG	2 cut(s)	745, 931
BstFNI	CGCG	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	1012
BstMAI	GTCTC	2 cut(s)	603, 651
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 253, 386, 954, 1018
BstNI	CCWGG	2 cut(s)	47, 360
BstNSI	RCATGY	4 cut(s)	396, 571, 785, 1068
BstSCI	CCNGG	2 cut(s)	45, 358
BstSLI	GKGCMC	1 cut(s)	551
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	5 cut(s)	326, 376, 391, 903, 994
BsuRI	GGCC	6 cut(s)	5, 45, 188, 304, 442, 967
BtgI	CCRYGG	2 cut(s)	40, 574
BtsCI	GGATG	2 cut(s)	745, 931
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	3 cut(s)	349, 480, 696
Cac8I	GCNNGC	1 cut(s)	748
CfoI	GCGC	1 cut(s)	1012
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	37
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	3 cut(s)	53, 326, 837
CviQI	GTAC	3 cut(s)	53, 326, 837
DdeI	CTNAG	3 cut(s)	28, 61, 415
EaeI	YGGCCR	3 cut(s)	3, 43, 965
Eam1104I	CTCTTC	4 cut(s)	83, 177, 256, 699
EarI	CTCTTC	4 cut(s)	83, 177, 256, 699
Eco130I	CCWWGG	1 cut(s)	574
Eco147I	AGGCCT	2 cut(s)	304, 442
Eco32I	GATATC	1 cut(s)	650
Eco47I	GGWCC	1 cut(s)	37
Eco57I	CTGAAG	2 cut(s)	387, 429
EcoNI	CCTNNNNNAGG	1 cut(s)	121
EcoRII	CCWGG	2 cut(s)	45, 358
EcoRV	GATATC	1 cut(s)	650
EcoT14I	CCWWGG	1 cut(s)	574
ErhI	CCWWGG	1 cut(s)	574
FauI	CCCGC	1 cut(s)	99
FblI	GTMKAC	1 cut(s)	636
Fnu4HI	GCNGC	7 cut(s)	6, 315, 378, 390, 405, 892, 1008
FokI	GGATG	2 cut(s)	752, 918
Fsp4HI	GCNGC	7 cut(s)	6, 315, 378, 390, 405, 892, 1008
FspBI	CTAG	2 cut(s)	747, 1038
FspI	TGCGCA	1 cut(s)	1011
GlaI	GCGC	1 cut(s)	1011
GluI	GCNGC	7 cut(s)	6, 315, 378, 390, 405, 892, 1008
HaeIII	GGCC	6 cut(s)	5, 45, 188, 304, 442, 967
HapII	CCGG	4 cut(s)	15, 35, 120, 968
HgaI	GACGC	1 cut(s)	117
HhaI	GCGC	1 cut(s)	1012
Hin1I	GRCGYC	1 cut(s)	128
Hin6I	GCGC	1 cut(s)	1010
HinP1I	GCGC	1 cut(s)	1010
HincII	GTYRAC	2 cut(s)	72, 559
HindII	GTYRAC	2 cut(s)	72, 559
HinfI	GANTC	3 cut(s)	195, 214, 587
HpaI	GTTAAC	1 cut(s)	559
HpaII	CCGG	4 cut(s)	15, 35, 120, 968
HphI	GGTGA	4 cut(s)	261, 504, 863, 935
Hpy166II	GTNNAC	7 cut(s)	40, 72, 398, 549, 559, 637, 779
Hpy188I	TCNGA	7 cut(s)	141, 165, 300, 367, 483, 853, 1032
Hpy188III	TCNNGA	3 cut(s)	120, 287, 754
Hpy8I	GTNNAC	7 cut(s)	40, 72, 398, 549, 559, 637, 779
Hpy99I	CGWCG	3 cut(s)	14, 133, 155
HpyAV	CCTTC	4 cut(s)	117, 362, 453, 896
HpyCH4III	ACNGT	3 cut(s)	244, 634, 841
HpyCH4IV	ACGT	1 cut(s)	814
HpyCH4V	TGCA	7 cut(s)	22, 314, 392, 478, 549, 567, 735
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 253, 386, 954, 1018
HpyF3I	CTNAG	3 cut(s)	28, 61, 415
HpySE526I	ACGT	1 cut(s)	814
Hsp92I	GRCGYC	1 cut(s)	128
HspAI	GCGC	1 cut(s)	1010
Kpn2I	TCCGGA	1 cut(s)	119
KpnI	GGTACC	1 cut(s)	840
KspAI	GTTAAC	1 cut(s)	559
LmnI	GCTCC	2 cut(s)	37, 118
Lsp1109I	GCAGC	5 cut(s)	326, 376, 391, 903, 994
LweI	GCATC	2 cut(s)	484, 487
MaeI	CTAG	2 cut(s)	747, 1038
MaeII	ACGT	1 cut(s)	814
MaeIII	GTNAC	7 cut(s)	220, 267, 344, 448, 628, 697, 958
MbiI	CCGCTC	2 cut(s)	94, 113
MboII	GAAGA	5 cut(s)	70, 194, 249, 273, 716
MfeI	CAATTG	1 cut(s)	973
MhlI	GDGCHC	1 cut(s)	551
MluCI	AATT	9 cut(s)	336, 353, 462, 596, 759, 771, 791, 973, 1053
MlyI	GAGTC	1 cut(s)	223
MroI	TCCGGA	1 cut(s)	119
MseI	TTAA	2 cut(s)	558, 1058
MslI	CAYNNNNRTG	1 cut(s)	876
MspI	CCGG	4 cut(s)	15, 35, 120, 968
MspR9I	CCNGG	2 cut(s)	47, 360
MunI	CAATTG	1 cut(s)	973
MvaI	CCWGG	2 cut(s)	47, 360
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	5 cut(s)	11, 253, 386, 954, 1018
NcoI	CCATGG	1 cut(s)	574
NheI	GCTAGC	1 cut(s)	746
NlaIV	GGNNCC	2 cut(s)	246, 838
NmuCI	GTSAC	2 cut(s)	267, 344
NsbI	TGCGCA	1 cut(s)	1011
NspI	RCATGY	4 cut(s)	396, 571, 785, 1068
PceI	AGGCCT	2 cut(s)	304, 442
PciI	ACATGT	1 cut(s)	1064
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PfeI	GAWTC	2 cut(s)	195, 587
PkrI	GCNGC	7 cut(s)	7, 316, 379, 391, 406, 893, 1009
PleI	GAGTC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	222
PscI	ACATGT	1 cut(s)	1064
Psp1406I	AACGTT	1 cut(s)	814
Psp6I	CCWGG	2 cut(s)	45, 358
PspGI	CCWGG	2 cut(s)	45, 358
PspN4I	GGNNCC	2 cut(s)	246, 838
PspPI	GGNCC	1 cut(s)	37
RsaI	GTAC	3 cut(s)	54, 327, 838
RsaNI	GTAC	3 cut(s)	53, 326, 837
RseI	CAYNNNNRTG	1 cut(s)	876
SaqAI	TTAA	2 cut(s)	558, 1058
SatI	GCNGC	7 cut(s)	6, 315, 378, 390, 405, 892, 1008
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	1 cut(s)	223
ScrFI	CCNGG	2 cut(s)	47, 360
SduI	GDGCHC	1 cut(s)	551
SfaNI	GCATC	2 cut(s)	484, 487
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	876
Sse9I	AATT	9 cut(s)	336, 353, 462, 596, 759, 771, 791, 973, 1053
SseBI	AGGCCT	2 cut(s)	304, 442
SsiI	CCGC	6 cut(s)	6, 92, 111, 378, 874, 990
SspMI	CTAG	2 cut(s)	747, 1038
StuI	AGGCCT	2 cut(s)	304, 442
StyD4I	CCNGG	2 cut(s)	45, 358
StyI	CCWWGG	1 cut(s)	574
TaaI	ACNGT	3 cut(s)	244, 634, 841
TaiI	ACGT	1 cut(s)	817
TasI	AATT	9 cut(s)	336, 353, 462, 596, 759, 771, 791, 973, 1053
TatI	WGTACW	1 cut(s)	325
TauI	GCSGC	2 cut(s)	8, 380
TfiI	GAWTC	2 cut(s)	195, 587
Tru1I	TTAA	2 cut(s)	558, 1058
Tru9I	TTAA	2 cut(s)	558, 1058
TscAI	CASTG	3 cut(s)	349, 480, 696
TseFI	GTSAC	2 cut(s)	267, 344
TseI	GCWGC	5 cut(s)	314, 389, 404, 891, 1007
Tsp45I	GTSAC	2 cut(s)	267, 344
TspDTI	ATGAA	3 cut(s)	70, 474, 836
TspGWI	ACGGA	3 cut(s)	621, 660, 716
TspRI	CASTG	3 cut(s)	349, 480, 696
VneI	GTGCAC	1 cut(s)	547
VpaK11BI	GGWCC	1 cut(s)	37
XagI	CCTNNNNNAGG	1 cut(s)	121
XapI	RAATTY	2 cut(s)	791, 1053
XceI	RCATGY	4 cut(s)	396, 571, 785, 1068
XmiI	GTMKAC	1 cut(s)	636
XspI	CTAG	2 cut(s)	747, 1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.