Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009013

Physical Location & Seq

Genomic Coordinates Forward (+)

29925145 .. 29929828

Gene Structure 4684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G306000.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGACAGTCGCTGGTCTGCAACTCTCGGCTCCCTCAGCACATGGCCAAGGCCAAGTCTTATTAAGTTCAGTAAAGTCATCTCTCTTCTCGGGGGCCCCACTCCGTTTCTCACTCCCCACCTCTGGAAGAGAACCATTTACTCGGAAGCAGCTCGTTGTCTTTGCTCGGAGACTTTCGGGCTTGGAGGAAGCCATGAGAATTAAAAGAGAACGTGAGAGTCAGCAGCTTACACCAAAGGTTAAAAGAAGGCCGCCATTGAGGCGTGGAAGGGTATCACCAGAACTTCCTGTTCCAGATCACATTCCAAGGCCTCCTTATGTTGGTTCATCTGAATTGCCAGAAATTGCCAGTGAACTTCAAATTCCTGGTTCTCAAGGCATTGCTGACATGAGAGCTGCATGTGAGCTTGCTGCTCGCGTCTTAGACTCTGCAGGAAAGTTGGTTAGGCCATCAATAACAACTAATGAAATTGACAAAGCAGTGCACCAGATGATTATTGATGCTGGTGCTTATCCCTCCCCTCTTGGCTATGGGGGATTTCCAAAGAGTGTTTGTACATCTGTTAATGAGTGCATGTGCCATGGAATACCTGATTCTCGACAGTTACAGAGTGGAGACATTATAAACATAGACGTGACGGTCTACCTAAATGGATATCATGGAGATACATCAAAGACATTTCTTTGTGGGGATGTCAGTGATGCAATCAAACAACTAGTGAAGGTAACTGAAGAGTGCTTGGAAAGGGGCATAGCAGTTTGCAAGGATGGTGCTAGCTTCAAGAAAATTGGAAAGCGAATTAGCGAACATGCTGAAAAATATGGTTATGGCGTGGTGGAGCGTTTTGTTGGGCATGGTGTGGGGACTGTATTTCATTCTGAACCATTAATATTACATCACCGCAATGACCAGTCTGGTTGCATGGTTGAAGGTCAGACATTTACCATTGAACCCATCCTTACTATGGGAAGCATTGAGTGTAAAACATGGCCGGACAATTGGACAACACTAACCGCTGATGGTAGCCCTGCTGCACAGTTTGAGCATACCATTCTGATCACTAGAACTGGTGCTGAAATTTTAACAATATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

365

Amino Acids

39.56

Weight (kDa)

7.6

Isoelectric Point (pI)

55.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13270 AT1G13270
fragaria_vesca	FvH4_4g28020
malus_domestica	MD13G1046000.v1.1 MD16G1047600.v1.1
prunus_persica	Prupe.1G306000_v2.0.a1 Prupe.1G306000_v2.0.a1 Prupe.1G306000_v2.0.a1 Prupe.1G306000_v2.0.a1
pyrus_communis	pycom13g04040 pycom16g04160
rosa_chinensis	RchiOBHm_Chr4g0435761
rosa_laevigata	RLG00000006561
rosa_multiflora	Rmu_co8005306.1_g000001 Rmu_sc0000051.1_g000022 Rmu_sc0036818.1_g000001
rosa_rugosa	Rorug04G0289400
rosa_samantha	Rh4AG343700 Rh4BG352400 Rh4CG366900 Rh4DG346300
rosa_wichuraiana	Rw4G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	623
AasI	GACNNNNNNGTC	1 cut(s)	638
AccI	GTMKAC	1 cut(s)	642
AccII	CGCG	1 cut(s)	417
AciI	CCGC	3 cut(s)	251, 901, 1014
AcoI	YGGCCR	2 cut(s)	43, 989
AcsI	RAATTY	2 cut(s)	360, 1077
AcuI	CTGAAG	1 cut(s)	750
AfaI	GTAC	1 cut(s)	556
AfiI	CCNNNNNNNGG	3 cut(s)	122, 320, 964
AgsI	TTSAA	4 cut(s)	359, 781, 929, 950
AhlI	ACTAGT	1 cut(s)	715
AjiI	CACGTC	1 cut(s)	634
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	5 cut(s)	151, 226, 395, 406, 777
AluI	AGCT	5 cut(s)	151, 226, 395, 406, 777
Alw21I	GWGCWC	1 cut(s)	486
Alw26I	GTCTC	2 cut(s)	163, 609
Alw44I	GTGCAC	1 cut(s)	482
AlwNI	CAGNNNCTG	1 cut(s)	11
Ama87I	CYCGRG	1 cut(s)	88
AoxI	GGCC	7 cut(s)	43, 49, 93, 248, 308, 446, 989
ApaI	GGGCCC	1 cut(s)	97
ApaLI	GTGCAC	1 cut(s)	482
ApeKI	GCWGC	5 cut(s)	148, 223, 395, 410, 1031
ApoI	RAATTY	2 cut(s)	360, 1077
AseI	ATTAAT	1 cut(s)	887
AspS9I	GGNCC	2 cut(s)	93, 94
AsuHPI	GGTGA	2 cut(s)	267, 890
AsuNHI	GCTAGC	1 cut(s)	773
AvaI	CYCGRG	1 cut(s)	88
BaeGI	GKGCMC	2 cut(s)	97, 486
BalI	TGGCCA	1 cut(s)	45
BanII	GRGCYC	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	486
BbvCI	CCTCAGC	1 cut(s)	34
BbvI	GCAGC	5 cut(s)	160, 235, 382, 397, 1018
BccI	CCATC	4 cut(s)	457, 761, 962, 1013
BciT130I	CCWGG	1 cut(s)	366
BclI	TGATCA	1 cut(s)	1056
BcoDI	GTCTC	2 cut(s)	163, 609
BcuI	ACTAGT	1 cut(s)	715
BfaI	CTAG	3 cut(s)	716, 774, 1062
BfmI	CTRYAG	1 cut(s)	429
BglI	GCCNNNNNGGC	1 cut(s)	259
BisI	GCNGC	6 cut(s)	149, 224, 251, 396, 411, 1032
BlsI	GCNGC	6 cut(s)	150, 225, 252, 397, 412, 1033
Bme1390I	CCNGG	1 cut(s)	366
BmeT110I	CYCGRG	1 cut(s)	88
BmgBI	CACGTC	1 cut(s)	634
BmgT120I	GGNCC	2 cut(s)	93, 94
BmiI	GGNNCC	4 cut(s)	30, 94, 95, 96
BmrFI	CCNGG	1 cut(s)	366
BmsI	GCATC	2 cut(s)	490, 691
BmtI	GCTAGC	1 cut(s)	777
Bpu10I	CCTNAGC	1 cut(s)	34
BpuEI	CTTGAG	1 cut(s)	357
BsaJI	CCNNGG	3 cut(s)	46, 305, 580
Bsc4I	CCNNNNNNNGG	3 cut(s)	122, 320, 964
Bse1I	ACTGG	3 cut(s)	348, 910, 1072
Bse3DI	GCAATG	2 cut(s)	378, 910
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	3 cut(s)	46, 305, 580
BseGI	GGATG	3 cut(s)	697, 772, 954
BseLI	CCNNNNNNNGG	3 cut(s)	122, 320, 964
BseMI	GCAATG	2 cut(s)	378, 910
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	3 cut(s)	348, 910, 1072
BseSI	GKGCMC	2 cut(s)	97, 486
BseXI	GCAGC	5 cut(s)	160, 235, 382, 397, 1018
BsgI	GTGCAG	1 cut(s)	1017
Bsh1236I	CGCG	1 cut(s)	417
BshFI	GGCC	7 cut(s)	45, 51, 95, 250, 310, 448, 991
BsiHKAI	GWGCWC	1 cut(s)	486
BsiHKCI	CYCGRG	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	992
BslFI	GGGAC	1 cut(s)	877
BslI	CCNNNNNNNGG	3 cut(s)	122, 320, 964
BsmAI	GTCTC	2 cut(s)	163, 609
BsmFI	GGGAC	1 cut(s)	877
BsnI	GGCC	7 cut(s)	45, 51, 95, 250, 310, 448, 991
BsoBI	CYCGRG	1 cut(s)	88
Bsp120I	GGGCCC	1 cut(s)	93
Bsp1286I	GDGCHC	2 cut(s)	97, 486
Bsp1407I	TGTACA	1 cut(s)	554
Bsp143I	GATC	2 cut(s)	295, 1056
Bsp19I	CCATGG	1 cut(s)	580
BspACI	CCGC	3 cut(s)	251, 901, 1014
BspANI	GGCC	7 cut(s)	45, 51, 95, 250, 310, 448, 991
BspCNI	CTCAG	1 cut(s)	47
BspFNI	CGCG	1 cut(s)	417
BspLI	GGNNCC	4 cut(s)	30, 94, 95, 96
BspMAI	CTGCAG	1 cut(s)	433
BspOI	GCTAGC	1 cut(s)	777
BsrDI	GCAATG	2 cut(s)	378, 910
BsrGI	TGTACA	1 cut(s)	554
BsrI	ACTGG	3 cut(s)	348, 910, 1072
BssECI	CCNNGG	3 cut(s)	46, 305, 580
BssMI	GATC	2 cut(s)	295, 1056
BssT1I	CCWWGG	3 cut(s)	46, 305, 580
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	5 cut(s)	7, 603, 640, 868, 1038
Bst6I	CTCTTC	3 cut(s)	89, 121, 726
BstAUI	TGTACA	1 cut(s)	554
BstC8I	GCNNGC	3 cut(s)	408, 415, 775
BstDEI	CTNAG	2 cut(s)	34, 421
BstDSI	CCRYGG	1 cut(s)	580
BstF5I	GGATG	3 cut(s)	697, 772, 954
BstFNI	CGCG	1 cut(s)	417
BstKTI	GATC	2 cut(s)	298, 1059
BstMAI	GTCTC	2 cut(s)	163, 609
BstMBI	GATC	2 cut(s)	295, 1056
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 259
BstNI	CCWGG	1 cut(s)	366
BstNSI	RCATGY	3 cut(s)	402, 577, 812
BstSCI	CCNGG	1 cut(s)	364
BstSFI	CTRYAG	1 cut(s)	429
BstSLI	GKGCMC	2 cut(s)	97, 486
BstUI	CGCG	1 cut(s)	417
BstV1I	GCAGC	5 cut(s)	160, 235, 382, 397, 1018
BsuRI	GGCC	7 cut(s)	45, 51, 95, 250, 310, 448, 991
BtgI	CCRYGG	1 cut(s)	580
BtrI	CACGTC	1 cut(s)	634
BtsCI	GGATG	3 cut(s)	697, 772, 954
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	3 cut(s)	355, 486, 703
Cac8I	GCNNGC	3 cut(s)	408, 415, 775
CaiI	CAGNNNCTG	1 cut(s)	11
Cfr13I	GGNCC	2 cut(s)	93, 94
CseI	GACGC	1 cut(s)	406
Csp6I	GTAC	1 cut(s)	555
CviQI	GTAC	1 cut(s)	555
DdeI	CTNAG	2 cut(s)	34, 421
DpnI	GATC	2 cut(s)	297, 1058
DpnII	GATC	2 cut(s)	295, 1056
DrdI	GACNNNNNNGTC	1 cut(s)	638
DseDI	GACNNNNNNGTC	1 cut(s)	638
EaeI	YGGCCR	2 cut(s)	43, 989
Eam1104I	CTCTTC	3 cut(s)	89, 121, 726
EarI	CTCTTC	3 cut(s)	89, 121, 726
Eco130I	CCWWGG	3 cut(s)	46, 305, 580
Eco147I	AGGCCT	1 cut(s)	310
Eco24I	GRGCYC	1 cut(s)	97
Eco32I	GATATC	1 cut(s)	656
Eco57I	CTGAAG	1 cut(s)	750
Eco88I	CYCGRG	1 cut(s)	88
EcoO109I	RGGNCCY	2 cut(s)	93, 94
EcoRII	CCWGG	1 cut(s)	364
EcoRV	GATATC	1 cut(s)	656
EcoT14I	CCWWGG	3 cut(s)	46, 305, 580
EcoT38I	GRGCYC	1 cut(s)	97
ErhI	CCWWGG	3 cut(s)	46, 305, 580
FalI	AAGNNNNNCTT	2 cut(s)	298, 330
FaqI	GGGAC	1 cut(s)	877
FbaI	TGATCA	1 cut(s)	1056
FblI	GTMKAC	1 cut(s)	642
Fnu4HI	GCNGC	6 cut(s)	149, 224, 251, 396, 411, 1032
FokI	GGATG	3 cut(s)	704, 779, 941
FriOI	GRGCYC	1 cut(s)	97
Fsp4HI	GCNGC	6 cut(s)	149, 224, 251, 396, 411, 1032
FspBI	CTAG	3 cut(s)	716, 774, 1062
GluI	GCNGC	6 cut(s)	149, 224, 251, 396, 411, 1032
HaeIII	GGCC	7 cut(s)	45, 51, 95, 250, 310, 448, 991
HapII	CCGG	1 cut(s)	992
HgaI	GACGC	1 cut(s)	406
HinfI	GANTC	3 cut(s)	217, 425, 593
HpaII	CCGG	1 cut(s)	992
HphI	GGTGA	2 cut(s)	267, 890
Hpy166II	GTNNAC	3 cut(s)	353, 484, 643
Hpy188I	TCNGA	6 cut(s)	144, 168, 331, 880, 936, 1056
Hpy188III	TCNNGA	4 cut(s)	123, 293, 597, 781
Hpy8I	GTNNAC	3 cut(s)	353, 484, 643
HpyAV	CCTTC	4 cut(s)	240, 261, 715, 923
HpyCH4III	ACNGT	5 cut(s)	7, 603, 640, 868, 1038
HpyCH4IV	ACGT	2 cut(s)	211, 633
HpyCH4V	TGCA	9 cut(s)	19, 398, 431, 484, 573, 704, 762, 921, 1034
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 259
HpyF3I	CTNAG	2 cut(s)	34, 421
HpySE526I	ACGT	2 cut(s)	211, 633
Ksp22I	TGATCA	1 cut(s)	1056
Kzo9I	GATC	2 cut(s)	295, 1056
LmnI	GCTCC	2 cut(s)	34, 838
Lsp1109I	GCAGC	5 cut(s)	160, 235, 382, 397, 1018
LweI	GCATC	2 cut(s)	490, 691
MaeI	CTAG	3 cut(s)	716, 774, 1062
MaeII	ACGT	2 cut(s)	211, 633
MaeIII	GTNAC	3 cut(s)	603, 634, 724
MalI	GATC	2 cut(s)	297, 1058
MboI	GATC	2 cut(s)	295, 1056
MboII	GAAGA	3 cut(s)	76, 138, 743
MfeI	CAATTG	1 cut(s)	997
MhlI	GDGCHC	2 cut(s)	97, 486
MlsI	TGGCCA	1 cut(s)	45
MluCI	AATT	9 cut(s)	198, 332, 342, 360, 468, 786, 798, 997, 1077
MluNI	TGGCCA	1 cut(s)	45
MlyI	GAGTC	2 cut(s)	226, 419
MnlI	CCTC	7 cut(s)	43, 130, 178, 252, 321, 526, 531
Mox20I	TGGCCA	1 cut(s)	45
MscI	TGGCCA	1 cut(s)	45
MseI	TTAA	7 cut(s)	62, 201, 240, 564, 887, 1082, 1093
MslI	CAYNNNNRTG	2 cut(s)	632, 903
Msp20I	TGGCCA	1 cut(s)	45
MspA1I	CMGCKG	1 cut(s)	1016
MspI	CCGG	1 cut(s)	992
MspR9I	CCNGG	1 cut(s)	366
MunI	CAATTG	1 cut(s)	997
MvaI	CCWGG	1 cut(s)	366
MvnI	CGCG	1 cut(s)	417
MwoI	GCNNNNNNNGC	2 cut(s)	35, 259
NcoI	CCATGG	1 cut(s)	580
NdeII	GATC	2 cut(s)	295, 1056
NheI	GCTAGC	1 cut(s)	773
NlaIV	GGNNCC	4 cut(s)	30, 94, 95, 96
NmeAIII	GCCGAG	1 cut(s)	5
NmuCI	GTSAC	1 cut(s)	634
NspI	RCATGY	3 cut(s)	402, 577, 812
PceI	AGGCCT	1 cut(s)	310
PfeI	GAWTC	1 cut(s)	593
PkrI	GCNGC	6 cut(s)	150, 225, 252, 397, 412, 1033
PleI	GAGTC	2 cut(s)	225, 419
PpsI	GAGTC	2 cut(s)	225, 419
PshBI	ATTAAT	1 cut(s)	887
PsiI	TTATAA	1 cut(s)	623
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	4 cut(s)	30, 94, 95, 96
PspOMI	GGGCCC	1 cut(s)	93
PspPI	GGNCC	2 cut(s)	93, 94
PstI	CTGCAG	1 cut(s)	433
PstNI	CAGNNNCTG	1 cut(s)	11
RsaI	GTAC	1 cut(s)	556
RsaNI	GTAC	1 cut(s)	555
RseI	CAYNNNNRTG	2 cut(s)	632, 903
SaqAI	TTAA	7 cut(s)	62, 201, 240, 564, 887, 1082, 1093
SatI	GCNGC	6 cut(s)	149, 224, 251, 396, 411, 1032
Sau3AI	GATC	2 cut(s)	295, 1056
Sau96I	GGNCC	2 cut(s)	93, 94
SchI	GAGTC	2 cut(s)	226, 419
ScrFI	CCNGG	1 cut(s)	366
SduI	GDGCHC	2 cut(s)	97, 486
SfaNI	GCATC	2 cut(s)	490, 691
SfcI	CTRYAG	1 cut(s)	429
SmiMI	CAYNNNNRTG	2 cut(s)	632, 903
SmlI	CTYRAG	1 cut(s)	372
SmoI	CTYRAG	1 cut(s)	372
SpeI	ACTAGT	1 cut(s)	715
Sse9I	AATT	9 cut(s)	198, 332, 342, 360, 468, 786, 798, 997, 1077
SseBI	AGGCCT	1 cut(s)	310
SsiI	CCGC	3 cut(s)	251, 901, 1014
SspI	AATATT	1 cut(s)	891
SspMI	CTAG	3 cut(s)	716, 774, 1062
StuI	AGGCCT	1 cut(s)	310
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	3 cut(s)	46, 305, 580
TaaI	ACNGT	5 cut(s)	7, 603, 640, 868, 1038
TaiI	ACGT	2 cut(s)	214, 636
TaqI	TCGA	1 cut(s)	598
TasI	AATT	9 cut(s)	198, 332, 342, 360, 468, 786, 798, 997, 1077
TatI	WGTACW	1 cut(s)	554
TauI	GCSGC	1 cut(s)	253
TfiI	GAWTC	1 cut(s)	593
Tru1I	TTAA	7 cut(s)	62, 201, 240, 564, 887, 1082, 1093
Tru9I	TTAA	7 cut(s)	62, 201, 240, 564, 887, 1082, 1093
TscAI	CASTG	3 cut(s)	355, 486, 703
TseFI	GTSAC	1 cut(s)	634
TseI	GCWGC	5 cut(s)	148, 223, 395, 410, 1031
Tsp45I	GTSAC	1 cut(s)	634
TspDTI	ATGAA	3 cut(s)	315, 480, 863
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	3 cut(s)	355, 486, 703
VneI	GTGCAC	1 cut(s)	482
VspI	ATTAAT	1 cut(s)	887
XapI	RAATTY	2 cut(s)	360, 1077
XceI	RCATGY	3 cut(s)	402, 577, 812
XcmI	CCANNNNNNNNNTGG	1 cut(s)	961
XmiI	GTMKAC	1 cut(s)	642
XspI	CTAG	3 cut(s)	716, 774, 1062

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.