Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036818.1

Orthogroup ID

OG0009013

Physical Location & Seq

Genomic Coordinates Forward (+)

112 .. 944

Gene Structure 833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036818.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 380 bp

atggccgccgtcgccggtctgcaactctcagctccggtccacggccaggtcgtactaagctcagccaagtcaactctcttcatggcgaccccgctcacatttccactctccactccctccggaagggcgtcgttttctcggaaacaactcgtcgtttttgctcggaggctttcaggcttggaagaggccatgagaatcaaaagattacgcgagagtcaagttacgacaagggttagaagaacggtgccattgaggcgtggaagagtgtcaccgacacttcctgttccagatgacattcagaggcctccttatgcagctacatctgtactgccagaaattgccagtgactatcaatttcctggttctgaaggcattgctgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

127

Amino Acids

13.74

Weight (kDa)

11.47

Isoelectric Point (pI)

66.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13270 AT1G13270
fragaria_vesca	FvH4_4g28020
malus_domestica	MD13G1046000.v1.1 MD16G1047600.v1.1
prunus_persica	Prupe.1G306000_v2.0.a1 Prupe.1G306000_v2.0.a1 Prupe.1G306000_v2.0.a1 Prupe.1G306000_v2.0.a1
pyrus_communis	pycom13g04040 pycom16g04160
rosa_chinensis	RchiOBHm_Chr4g0435761
rosa_laevigata	RLG00000006561
rosa_multiflora	Rmu_co8005306.1_g000001 Rmu_sc0000051.1_g000022 Rmu_sc0036818.1_g000001
rosa_rugosa	Rorug04G0289400
rosa_samantha	Rh4AG343700 Rh4BG352400 Rh4CG366900 Rh4DG346300
rosa_wichuraiana	Rw4G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	244
AccBSI	CCGCTC	1 cut(s)	94
AccII	CGCG	1 cut(s)	210
AccIII	TCCGGA	1 cut(s)	119
AciI	CCGC	2 cut(s)	6, 92
AcoI	YGGCCR	2 cut(s)	3, 43
AcyI	GRCGYC	1 cut(s)	128
AfaI	GTAC	2 cut(s)	54, 327
AfiI	CCNNNNNNNGG	3 cut(s)	41, 46, 123
AjnI	CCWGG	2 cut(s)	45, 358
AluBI	AGCT	3 cut(s)	32, 60, 317
AluI	AGCT	3 cut(s)	32, 60, 317
Aor13HI	TCCGGA	1 cut(s)	119
AoxI	GGCC	4 cut(s)	3, 43, 186, 302
ApeKI	GCWGC	2 cut(s)	314, 377
AspS9I	GGNCC	1 cut(s)	37
AsuHPI	GGTGA	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	37
BanI	GGYRCC	1 cut(s)	244
BbvI	GCAGC	2 cut(s)	326, 364
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	2 cut(s)	47, 360
BglI	GCCNNNNNGGC	1 cut(s)	253
BisI	GCNGC	3 cut(s)	6, 315, 378
BlpI	GCTNAGC	1 cut(s)	61
BlsI	GCNGC	3 cut(s)	7, 316, 379
Bme1390I	CCNGG	2 cut(s)	47, 360
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	1 cut(s)	246
BmrFI	CCNGG	2 cut(s)	47, 360
Bpu1102I	GCTNAGC	1 cut(s)	61
BsaHI	GRCGYC	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	40
BsaWI	WCCGGW	2 cut(s)	34, 119
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 46, 123
Bse118I	RCCGGY	1 cut(s)	14
Bse1I	ACTGG	1 cut(s)	342
Bse3DI	GCAATG	1 cut(s)	372
BseAI	TCCGGA	1 cut(s)	119
BseBI	CCWGG	2 cut(s)	47, 360
BseDI	CCNNGG	1 cut(s)	40
BseLI	CCNNNNNNNGG	3 cut(s)	41, 46, 123
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	2 cut(s)	42, 75
BseNI	ACTGG	1 cut(s)	342
BseXI	GCAGC	2 cut(s)	326, 364
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	4 cut(s)	5, 45, 188, 304
BshNI	GGYRCC	1 cut(s)	244
BsiSI	CCGG	3 cut(s)	15, 35, 120
BslI	CCNNNNNNNGG	3 cut(s)	41, 46, 123
BsnI	GGCC	4 cut(s)	5, 45, 188, 304
Bsp13I	TCCGGA	1 cut(s)	119
Bsp1720I	GCTNAGC	1 cut(s)	61
BspACI	CCGC	2 cut(s)	6, 92
BspANI	GGCC	4 cut(s)	5, 45, 188, 304
BspCNI	CTCAG	2 cut(s)	41, 74
BspEI	TCCGGA	1 cut(s)	119
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	246
BspT107I	GGYRCC	1 cut(s)	244
BsrBI	CCGCTC	1 cut(s)	94
BsrDI	GCAATG	1 cut(s)	372
BsrFI	RCCGGY	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	342
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	40
BssNI	GRCGYC	1 cut(s)	128
Bst2UI	CCWGG	2 cut(s)	47, 360
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	3 cut(s)	83, 177, 256
BstACI	GRCGYC	1 cut(s)	128
BstDEI	CTNAG	3 cut(s)	28, 56, 61
BstDSI	CCRYGG	1 cut(s)	40
BstENI	CCTNNNNNAGG	1 cut(s)	121
BstFNI	CGCG	1 cut(s)	210
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 253
BstNI	CCWGG	2 cut(s)	47, 360
BstSCI	CCNGG	2 cut(s)	45, 358
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	2 cut(s)	326, 364
BsuRI	GGCC	4 cut(s)	5, 45, 188, 304
BtgI	CCRYGG	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	349
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	37
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	2 cut(s)	53, 326
CviAII	CATG	2 cut(s)	82, 190
CviQI	GTAC	2 cut(s)	53, 326
DdeI	CTNAG	3 cut(s)	28, 56, 61
EaeI	YGGCCR	2 cut(s)	3, 43
Eam1104I	CTCTTC	3 cut(s)	83, 177, 256
EarI	CTCTTC	3 cut(s)	83, 177, 256
Eco147I	AGGCCT	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	37
EcoNI	CCTNNNNNAGG	1 cut(s)	121
EcoRII	CCWGG	2 cut(s)	45, 358
FaeI	CATG	2 cut(s)	85, 193
FaiI	YATR	3 cut(s)	83, 191, 312
FatI	CATG	2 cut(s)	81, 189
FauI	CCCGC	1 cut(s)	99
Fnu4HI	GCNGC	3 cut(s)	6, 315, 378
Fsp4HI	GCNGC	3 cut(s)	6, 315, 378
GluI	GCNGC	3 cut(s)	6, 315, 378
HaeIII	GGCC	4 cut(s)	5, 45, 188, 304
HapII	CCGG	3 cut(s)	15, 35, 120
HgaI	GACGC	1 cut(s)	117
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	2 cut(s)	85, 193
HincII	GTYRAC	1 cut(s)	72
HindII	GTYRAC	1 cut(s)	72
HinfI	GANTC	2 cut(s)	195, 214
HpaII	CCGG	3 cut(s)	15, 35, 120
HphI	GGTGA	1 cut(s)	261
Hpy166II	GTNNAC	2 cut(s)	40, 72
Hpy188I	TCNGA	4 cut(s)	141, 165, 300, 367
Hpy188III	TCNNGA	2 cut(s)	120, 287
Hpy8I	GTNNAC	2 cut(s)	40, 72
Hpy99I	CGWCG	3 cut(s)	14, 133, 155
HpyAV	CCTTC	2 cut(s)	117, 362
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4V	TGCA	2 cut(s)	22, 314
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 253
HpyF3I	CTNAG	3 cut(s)	28, 56, 61
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	2 cut(s)	85, 193
Kpn2I	TCCGGA	1 cut(s)	119
LmnI	GCTCC	1 cut(s)	37
Lsp1109I	GCAGC	2 cut(s)	326, 364
MaeIII	GTNAC	3 cut(s)	220, 267, 344
MbiI	CCGCTC	1 cut(s)	94
MboII	GAAGA	4 cut(s)	70, 194, 249, 273
MluCI	AATT	2 cut(s)	336, 353
MlyI	GAGTC	1 cut(s)	223
MnlI	CCTC	6 cut(s)	127, 159, 178, 246, 294, 315
MroI	TCCGGA	1 cut(s)	119
MspI	CCGG	3 cut(s)	15, 35, 120
MspR9I	CCNGG	2 cut(s)	47, 360
MvaI	CCWGG	2 cut(s)	47, 360
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	11, 253
NlaIII	CATG	2 cut(s)	85, 193
NlaIV	GGNNCC	1 cut(s)	246
NmuCI	GTSAC	2 cut(s)	267, 344
PceI	AGGCCT	1 cut(s)	304
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	195
PkrI	GCNGC	3 cut(s)	7, 316, 379
PleI	GAGTC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	222
Psp6I	CCWGG	2 cut(s)	45, 358
PspGI	CCWGG	2 cut(s)	45, 358
PspN4I	GGNNCC	1 cut(s)	246
PspPI	GGNCC	1 cut(s)	37
RsaI	GTAC	2 cut(s)	54, 327
RsaNI	GTAC	2 cut(s)	53, 326
SatI	GCNGC	3 cut(s)	6, 315, 378
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	1 cut(s)	223
ScrFI	CCNGG	2 cut(s)	47, 360
SetI	ASST	4 cut(s)	34, 51, 62, 319
SinI	GGWCC	1 cut(s)	37
Sse9I	AATT	2 cut(s)	336, 353
SseBI	AGGCCT	1 cut(s)	304
SsiI	CCGC	2 cut(s)	6, 92
StuI	AGGCCT	1 cut(s)	304
StyD4I	CCNGG	2 cut(s)	45, 358
TaaI	ACNGT	1 cut(s)	244
TasI	AATT	2 cut(s)	336, 353
TatI	WGTACW	1 cut(s)	325
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	195
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	2 cut(s)	267, 344
TseI	GCWGC	2 cut(s)	314, 377
Tsp45I	GTSAC	2 cut(s)	267, 344
TspDTI	ATGAA	1 cut(s)	70
TspRI	CASTG	1 cut(s)	349
VpaK11BI	GGWCC	1 cut(s)	37
XagI	CCTNNNNNAGG	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.