Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009013

Physical Location & Seq

Genomic Coordinates Forward (+)

46387516 .. 46389333

Gene Structure 1818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0289400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGATGAAGGAGTACCAAACGCCACACAAGGACCATGCCCGACCTCCTCCCAAGCTCTCCAATCGCCTATCCAAGAAGACCGTTCCCAAGAAGAGCTTGAACACTGCGTTTTCTTCAATCTCCGAAGATGTGCAAGTCGAGACCTCCAAGCACTCCCTGGATTCCACTCCGATTTCTGTGATTTCTCAGATCGATGAGGTCAATTGCAAGGCGGAGATCTCCGAGAGTCTGATGACCCTGCCAGATCCAGCTCTCTCAGATTCATCAGAGAGCTTGTTTGCCTCTGATCTCTCTCCATCTTCAGAGTCCACTATTGATAAGAGCGATTCAAGCCATGACTCTTGGAGTGTTGCTAAATGTGAAATTGATAGCTCAAAGTTTGGTTCGATGGGGGCTGAGGTTGTAGCAAGCTTTCTCAAGCAAGCTCGGACTCAGGTCTTGAACTCTGCTGGTGTGGATGCTAAATCTAAGAAGATTCTGGATGCACTGGTTGAGATTGTGATAGAGGATTTCCACACTGTGCCTGAAGAGAAGGACCAGATTGCTAAACTTCTTTCAGCAAAAGCGAAAATGCTAGTTGTGTGTCTCTTGCTATGGATCCTTGCAATGGCTGTGTTTTTGGTGTTCGGCTCTGGATCCCGAAGCACATTTCGTGGACCACTGCCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

223

Amino Acids

24.2

Weight (kDa)

5.76

Isoelectric Point (pI)

48.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13270 AT1G13270
fragaria_vesca	FvH4_4g28020
malus_domestica	MD13G1046000.v1.1 MD16G1047600.v1.1
prunus_persica	Prupe.1G306000_v2.0.a1 Prupe.1G306000_v2.0.a1 Prupe.1G306000_v2.0.a1 Prupe.1G306000_v2.0.a1
pyrus_communis	pycom13g04040 pycom16g04160
rosa_chinensis	RchiOBHm_Chr4g0435761
rosa_laevigata	RLG00000006561
rosa_multiflora	Rmu_co8005306.1_g000001 Rmu_sc0000051.1_g000022 Rmu_sc0036818.1_g000001
rosa_rugosa	Rorug04G0289400
rosa_samantha	Rh4AG343700 Rh4BG352400 Rh4CG366900 Rh4DG346300
rosa_wichuraiana	Rw4G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	212
AclWI	GGATC	5 cut(s)	239, 592, 605, 630, 643
AcuI	CTGAAG	2 cut(s)	285, 546
AdeI	CACNNNGTG	1 cut(s)	520
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	607
AgsI	TTSAA	4 cut(s)	100, 117, 330, 442
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	7 cut(s)	55, 96, 251, 273, 372, 411, 425
AluI	AGCT	7 cut(s)	55, 96, 251, 273, 372, 411, 425
Alw26I	GTCTC	2 cut(s)	134, 590
AlwI	GGATC	5 cut(s)	239, 592, 605, 630, 643
AspS9I	GGNCC	3 cut(s)	31, 535, 656
AvaII	GGWCC	3 cut(s)	31, 535, 656
BamHI	GGATCC	2 cut(s)	597, 635
BbsI	GAAGAC	1 cut(s)	83
BbvCI	CCTCAGC	1 cut(s)	396
BccI	CCATC	2 cut(s)	304, 382
BciT130I	CCWGG	1 cut(s)	158
BcoDI	GTCTC	2 cut(s)	134, 590
BfaI	CTAG	1 cut(s)	575
BglII	AGATCT	1 cut(s)	216
Bme1390I	CCNGG	1 cut(s)	158
Bme18I	GGWCC	3 cut(s)	31, 535, 656
BmgT120I	GGNCC	3 cut(s)	31, 535, 656
BmiI	GGNNCC	2 cut(s)	599, 637
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	2 cut(s)	448, 472
BoxI	GACNNNNGTC	1 cut(s)	434
BpiI	GAAGAC	1 cut(s)	83
Bpu10I	CCTNAGC	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	401
Bsa29I	ATCGAT	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	134
BsaJI	CCNNGG	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	1 cut(s)	607
Bse1I	ACTGG	1 cut(s)	492
Bse3DI	GCAATG	1 cut(s)	612
BseBI	CCWGG	1 cut(s)	158
BseCI	ATCGAT	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	156
BseGI	GGATG	2 cut(s)	463, 487
BseLI	CCNNNNNNNGG	1 cut(s)	607
BseMI	GCAATG	1 cut(s)	612
BseMII	CTCAG	4 cut(s)	200, 270, 387, 446
BseNI	ACTGG	1 cut(s)	492
BseRI	GAGGAG	1 cut(s)	36
BshVI	ATCGAT	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	607
BsmAI	GTCTC	2 cut(s)	134, 590
Bso31I	GGTCTC	1 cut(s)	134
Bsp143I	GATC	6 cut(s)	189, 216, 244, 286, 597, 635
BspACI	CCGC	1 cut(s)	212
BspCNI	CTCAG	4 cut(s)	199, 269, 388, 445
BspDI	ATCGAT	1 cut(s)	192
BspLI	GGNNCC	2 cut(s)	599, 637
BspPI	GGATC	5 cut(s)	239, 592, 605, 630, 643
BspQI	GCTCTTC	1 cut(s)	86
BspTNI	GGTCTC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	612
BsrI	ACTGG	1 cut(s)	492
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	6 cut(s)	189, 216, 244, 286, 597, 635
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	2 cut(s)	82, 520
Bst6I	CTCTTC	2 cut(s)	86, 522
BstC8I	GCNNGC	2 cut(s)	409, 423
BstDEI	CTNAG	5 cut(s)	186, 256, 396, 432, 468
BstF5I	GGATG	2 cut(s)	463, 487
BstKTI	GATC	6 cut(s)	192, 219, 247, 289, 600, 638
BstMAI	GTCTC	2 cut(s)	134, 590
BstMBI	GATC	6 cut(s)	189, 216, 244, 286, 597, 635
BstMWI	GCNNNNNNNGC	1 cut(s)	330
BstNI	CCWGG	1 cut(s)	158
BstPAI	GACNNNNGTC	1 cut(s)	434
BstSCI	CCNGG	1 cut(s)	156
BstV2I	GAAGAC	1 cut(s)	83
BstX2I	RGATCY	4 cut(s)	216, 244, 597, 635
BstYI	RGATCY	4 cut(s)	216, 244, 597, 635
Bsu15I	ATCGAT	1 cut(s)	192
BsuTUI	ATCGAT	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	463, 487
BtsI	GCAGTG	2 cut(s)	102, 659
BtsIMutI	CAGTG	4 cut(s)	102, 485, 516, 659
Cac8I	GCNNGC	2 cut(s)	409, 423
Cfr13I	GGNCC	3 cut(s)	31, 535, 656
ClaI	ATCGAT	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	2 cut(s)	35, 335
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	5 cut(s)	186, 256, 396, 432, 468
DpnI	GATC	6 cut(s)	191, 218, 246, 288, 599, 637
DpnII	GATC	6 cut(s)	189, 216, 244, 286, 597, 635
DraIII	CACNNNGTG	1 cut(s)	520
Eam1104I	CTCTTC	2 cut(s)	86, 522
EarI	CTCTTC	2 cut(s)	86, 522
EciI	GGCGGA	1 cut(s)	227
Eco31I	GGTCTC	1 cut(s)	134
Eco47I	GGWCC	3 cut(s)	31, 535, 656
Eco57I	CTGAAG	2 cut(s)	285, 546
EcoRII	CCWGG	1 cut(s)	156
FaeI	CATG	2 cut(s)	38, 338
FaiI	YATR	3 cut(s)	36, 336, 595
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FatI	CATG	2 cut(s)	34, 334
FokI	GGATG	2 cut(s)	470, 494
FspBI	CTAG	1 cut(s)	575
Hin1II	CATG	2 cut(s)	38, 338
HindIII	AAGCTT	1 cut(s)	409
HinfI	GANTC	8 cut(s)	161, 226, 260, 305, 326, 338, 430, 475
Hpy166II	GTNNAC	2 cut(s)	309, 656
Hpy188III	TCNNGA	5 cut(s)	139, 439, 479, 633, 639
Hpy8I	GTNNAC	2 cut(s)	309, 656
HpyAV	CCTTC	1 cut(s)	526
HpyCH4III	ACNGT	2 cut(s)	82, 520
HpyCH4V	TGCA	4 cut(s)	133, 207, 485, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	330
HpyF3I	CTNAG	5 cut(s)	186, 256, 396, 432, 468
Hsp92II	CATG	2 cut(s)	38, 338
Kzo9I	GATC	6 cut(s)	189, 216, 244, 286, 597, 635
LguI	GCTCTTC	1 cut(s)	86
LweI	GCATC	2 cut(s)	448, 472
MaeI	CTAG	1 cut(s)	575
MalI	GATC	6 cut(s)	191, 218, 246, 288, 599, 637
MboI	GATC	6 cut(s)	189, 216, 244, 286, 597, 635
MboII	GAAGA	7 cut(s)	88, 103, 105, 137, 291, 484, 539
MfeI	CAATTG	1 cut(s)	202
MflI	RGATCY	4 cut(s)	216, 244, 597, 635
MluCI	AATT	2 cut(s)	202, 363
MlyI	GAGTC	4 cut(s)	235, 314, 332, 424
MnlI	CCTC	7 cut(s)	54, 57, 154, 190, 292, 391, 499
MspR9I	CCNGG	1 cut(s)	158
MunI	CAATTG	1 cut(s)	202
MvaI	CCWGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	330
NdeII	GATC	6 cut(s)	189, 216, 244, 286, 597, 635
NlaIII	CATG	2 cut(s)	38, 338
NlaIV	GGNNCC	2 cut(s)	599, 637
PciSI	GCTCTTC	1 cut(s)	86
PfeI	GAWTC	4 cut(s)	161, 260, 326, 475
PleI	GAGTC	4 cut(s)	234, 313, 332, 424
PpsI	GAGTC	4 cut(s)	234, 313, 332, 424
PshAI	GACNNNNGTC	1 cut(s)	434
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	2 cut(s)	599, 637
PspPI	GGNCC	3 cut(s)	31, 535, 656
PsuI	RGATCY	4 cut(s)	216, 244, 597, 635
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SapI	GCTCTTC	1 cut(s)	86
Sau3AI	GATC	6 cut(s)	189, 216, 244, 286, 597, 635
Sau96I	GGNCC	3 cut(s)	31, 535, 656
SchI	GAGTC	4 cut(s)	235, 314, 332, 424
ScrFI	CCNGG	1 cut(s)	158
SfaNI	GCATC	2 cut(s)	448, 472
SinI	GGWCC	3 cut(s)	31, 535, 656
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
Sse9I	AATT	2 cut(s)	202, 363
SsiI	CCGC	1 cut(s)	212
SspMI	CTAG	1 cut(s)	575
StyD4I	CCNGG	1 cut(s)	156
TaaI	ACNGT	2 cut(s)	82, 520
TaqI	TCGA	3 cut(s)	138, 192, 386
TasI	AATT	2 cut(s)	202, 363
TfiI	GAWTC	4 cut(s)	161, 260, 326, 475
TscAI	CASTG	4 cut(s)	109, 492, 523, 666
TspDTI	ATGAA	2 cut(s)	20, 252
TspRI	CASTG	4 cut(s)	109, 492, 523, 666
VpaK11BI	GGWCC	3 cut(s)	31, 535, 656
XcmI	CCANNNNNNNNNTGG	1 cut(s)	154
XspI	CTAG	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.